CmUC09G177370 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G177370
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr09: 32831131 .. 32831349 (+)
RNA-Seq ExpressionCmUC09G177370
SyntenyCmUC09G177370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGCATGGTAGAGTCATGGATGAAGCAGCTTGGAAAGTGGAAGAACAGAGTTGAAGCTCAACGGAAGAAGAAGCCATTGATGTCCAAATCCAACCAATTACTGCCCCCAACACACCTCAAACAAACCACAGATTCCGATTCCGACGACACAGAAACCACCACCCTCTCCGAATCCACCATTTGTTTGCTCATGGATCGCTTTGCTCCCATGTAA

mRNA sequence

ATGTCGGGCATGGTAGAGTCATGGATGAAGCAGCTTGGAAAGTGGAAGAACAGAGTTGAAGCTCAACGGAAGAAGAAGCCATTGATGTCCAAATCCAACCAATTACTGCCCCCAACACACCTCAAACAAACCACAGATTCCGATTCCGACGACACAGAAACCACCACCCTCTCCGAATCCACCATTTGTTTGCTCATGGATCGCTTTGCTCCCATGTAA

Coding sequence (CDS)

ATGTCGGGCATGGTAGAGTCATGGATGAAGCAGCTTGGAAAGTGGAAGAACAGAGTTGAAGCTCAACGGAAGAAGAAGCCATTGATGTCCAAATCCAACCAATTACTGCCCCCAACACACCTCAAACAAACCACAGATTCCGATTCCGACGACACAGAAACCACCACCCTCTCCGAATCCACCATTTGTTTGCTCATGGATCGCTTTGCTCCCATGTAA

Protein sequence

MSGMVESWMKQLGKWKNRVEAQRKKKPLMSKSNQLLPPTHLKQTTDSDSDDTETTTLSESTICLLMDRFAPM
Homology
BLAST of CmUC09G177370 vs. NCBI nr
Match: KGN61756.1 (hypothetical protein Csa_006080 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 5.4e-14
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1   MSGMVESWMKQLGKWKNRVEAQ--RKKKPLMSKSNQLLPPTHLKQ---TTDSDSDDTETT 60
           MS MVESWM +LGKW+NRVEAQ    KKPLM KS Q L   H KQ   T  +DSDDTET+
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQ-LQTDHFKQPAKTHMADSDDTETS 96

Query: 61  TLSESTICLLMDRFAPM 73
            LSESTICLL+DRFAP+
Sbjct: 97  VLSESTICLLIDRFAPL 112

BLAST of CmUC09G177370 vs. NCBI nr
Match: KAG6571144.1 (hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 9.2e-14
Identity = 47/71 (66.20%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 1  MSGMVESWMKQLGKWKNRVEAQRKKKPLMSKSNQLLPPTHLKQTTDSDSDDTETTTLSES 60
          MS MVESWM +LGKWKNRVEAQ+KKKPLM KSNQ L          + SDDTET    E+
Sbjct: 1  MSAMVESWMSELGKWKNRVEAQKKKKPLMPKSNQFLQ----NDVVSAHSDDTETERERET 60

Query: 61 TICLLMDRFAP 72
          TICLL+DRFAP
Sbjct: 61 TICLLIDRFAP 67

BLAST of CmUC09G177370 vs. NCBI nr
Match: KAG6605111.1 (hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 1  MSGMVESWMKQLGKWKNRVEAQRKKKPLMSKSNQLLPPTHLKQTTD-----SDSDDTETT 60
          M+ MVESWM +LGKWKNRVEAQ KKKPLM KS +L     LK++ +     +DSDD E  
Sbjct: 1  MAAMVESWMSELGKWKNRVEAQ-KKKPLMPKS-KLCHQRDLKESENNLVISADSDDRE-A 60

Query: 61 TLSESTICLLMD 68
          TLS+STI  + D
Sbjct: 61 TLSDSTILCVND 69

BLAST of CmUC09G177370 vs. NCBI nr
Match: OMO75267.1 (hypothetical protein CCACVL1_16259 [Corchorus capsularis] >OMO92173.1 hypothetical protein COLO4_17779 [Corchorus olitorius])

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 1  MSGMVESWMKQLGKWKNRVEAQRKKKPLMS---KSNQLLPPTHLKQTTDSDSDDTETTTL 60
          MS +V  WM +L K K +V+A+R+   L S   K  QL    H++Q  ++  DDT  TT+
Sbjct: 1  MSAIVGEWMDELAKLKEKVQARRRPLFLSSRPKKEQQLAKEGHVEQ-KEAAKDDTNETTM 60

Query: 61 SESTICLLMDRFAP 72
          SE+T+CLLMDRF P
Sbjct: 61 SETTVCLLMDRFVP 73

BLAST of CmUC09G177370 vs. ExPASy TrEMBL
Match: A0A0A0LP24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-14
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1   MSGMVESWMKQLGKWKNRVEAQ--RKKKPLMSKSNQLLPPTHLKQ---TTDSDSDDTETT 60
           MS MVESWM +LGKW+NRVEAQ    KKPLM KS Q L   H KQ   T  +DSDDTET+
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQ-LQTDHFKQPAKTHMADSDDTETS 96

Query: 61  TLSESTICLLMDRFAPM 73
            LSESTICLL+DRFAP+
Sbjct: 97  VLSESTICLLIDRFAPL 112

BLAST of CmUC09G177370 vs. ExPASy TrEMBL
Match: A0A1R3HY48 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_16259 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 1  MSGMVESWMKQLGKWKNRVEAQRKKKPLMS---KSNQLLPPTHLKQTTDSDSDDTETTTL 60
          MS +V  WM +L K K +V+A+R+   L S   K  QL    H++Q  ++  DDT  TT+
Sbjct: 1  MSAIVGEWMDELAKLKEKVQARRRPLFLSSRPKKEQQLAKEGHVEQ-KEAAKDDTNETTM 60

Query: 61 SESTICLLMDRFAP 72
          SE+T+CLLMDRF P
Sbjct: 61 SETTVCLLMDRFVP 73

BLAST of CmUC09G177370 vs. ExPASy TrEMBL
Match: A0A1R3JBF3 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17779 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 1  MSGMVESWMKQLGKWKNRVEAQRKKKPLMS---KSNQLLPPTHLKQTTDSDSDDTETTTL 60
          MS +V  WM +L K K +V+A+R+   L S   K  QL    H++Q  ++  DDT  TT+
Sbjct: 1  MSAIVGEWMDELAKLKEKVQARRRPLFLSSRPKKEQQLAKEGHVEQ-KEAAKDDTNETTM 60

Query: 61 SESTICLLMDRFAP 72
          SE+T+CLLMDRF P
Sbjct: 61 SETTVCLLMDRFVP 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61756.15.4e-1467.53hypothetical protein Csa_006080 [Cucumis sativus][more]
KAG6571144.19.2e-1466.20hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605111.12.7e-0556.94hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sorori... [more]
OMO75267.11.7e-0445.95hypothetical protein CCACVL1_16259 [Corchorus capsularis] >OMO92173.1 hypothetic... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LP242.6e-1467.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1[more]
A0A1R3HY488.4e-0545.95Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_16259 PE=4 ... [more]
A0A1R3JBF38.4e-0545.95Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17779 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..43
NoneNo IPR availablePANTHERPTHR36346:SF2EXPRESSED PROTEINcoord: 1..72
NoneNo IPR availablePANTHERPTHR36346EXPRESSED PROTEINcoord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G177370.1CmUC09G177370.1mRNA