CmUC09G176600 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G176600
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionnuclear pore complex protein GP210 isoform X2
LocationCmU531Chr09: 30999939 .. 31000360 (+)
RNA-Seq ExpressionCmUC09G176600
SyntenyCmUC09G176600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACTCATAGGAGCTATTTCTTCAATGTTGTTGTGAATGAATCTCATATTGGTGAGTTTTTGGGGAGAATTAATATGGTCATGACATTGGGCTCAATCCTCCACTATCATCTTCAATTATGGCCCTGGTAGAAGGCTCTTAAGTTGTTGGTTTAGCTGTTGGGATCAATGATAGAAGTTCTATGGATTCCTCCCAAGTTGTGTACCTGCATTTTCTTCTACATTTTGAAGATCAAATAGTTGAGCTTGTAGGCACTAATGATGCTATGATTACTGGTCATAGGGTGGTTAAAGCTTCAAGTTTCAAAATTAAAGTTGTATCACTTGGGTCAACAACTCTTTATGTGCATCTTATACGCTCGAAATTAATGGTCCAACAGTTGGGGCATTTGTTGAGTTTGCTAGTTTGGATAGTGTAA

mRNA sequence

ATGTCAACTCATAGGAGCTATTTCTTCAATGTTGTTGTGAATGAATCTCATATTGCTGTTGGGATCAATGATAGAAGTTCTATGGATTCCTCCCAAGTTGTGTACCTGCATTTTCTTCTACATTTTGAAGATCAAATAGTTGAGCTTGTAGGCACTAATGATGCTATGATTACTGGTCATAGGGTGGTTAAAGCTTCAAGTTTCAAAATTAAAGTTGTATCACTTGGGTCAACAACTCTTTATGTGCATCTTATACGCTCGAAATTAATGGTCCAACAGTTGGGGCATTTGTTGAGTTTGCTAGTTTGGATAGTGTAA

Coding sequence (CDS)

ATGTCAACTCATAGGAGCTATTTCTTCAATGTTGTTGTGAATGAATCTCATATTGCTGTTGGGATCAATGATAGAAGTTCTATGGATTCCTCCCAAGTTGTGTACCTGCATTTTCTTCTACATTTTGAAGATCAAATAGTTGAGCTTGTAGGCACTAATGATGCTATGATTACTGGTCATAGGGTGGTTAAAGCTTCAAGTTTCAAAATTAAAGTTGTATCACTTGGGTCAACAACTCTTTATGTGCATCTTATACGCTCGAAATTAATGGTCCAACAGTTGGGGCATTTGTTGAGTTTGCTAGTTTGGATAGTGTAA

Protein sequence

MSTHRSYFFNVVVNESHIAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGSTTLYVHLIRSKLMVQQLGHLLSLLVWIV
Homology
[Close]
BLAST of CmUC09G176600 vs. NCBI nr
Match: KGN59706.1 (hypothetical protein Csa_001846 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+ ITGH VVKAS FKIK VSLG+
Sbjct: 1066 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSRITGHGVVKASGFKIKAVSLGT 1125

Query: 78   TTLYVHLIR 87
            TTLYV +++
Sbjct: 1126 TTLYVSILQ 1134

[Close]
BLAST of CmUC09G176600 vs. NCBI nr
Match: XP_011652297.1 (nuclear pore complex protein GP210 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+ ITGH VVKAS FKIK VSLG+
Sbjct: 1066 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSRITGHGVVKASGFKIKAVSLGT 1125

Query: 78   TTLYVHLIR 87
            TTLYV +++
Sbjct: 1126 TTLYVSILQ 1134

[Close]
BLAST of CmUC09G176600 vs. NCBI nr
Match: KAA0057251.1 (nuclear pore complex protein GP210 isoform X3 [Cucumis melo var. makuwa] >TYK18710.1 nuclear pore complex protein GP210 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+MITG  VVKAS FKIK VSLG+
Sbjct: 1066 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSMITGQAVVKASGFKIKAVSLGT 1125

Query: 78   TTLYVHLIR 87
            TT+YV +++
Sbjct: 1126 TTIYVSILQ 1134

[Close]
BLAST of CmUC09G176600 vs. NCBI nr
Match: XP_016903286.1 (PREDICTED: nuclear pore complex protein GP210 isoform X3 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+MITG  VVKAS FKIK VSLG+
Sbjct: 1066 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSMITGQAVVKASGFKIKAVSLGT 1125

Query: 78   TTLYVHLIR 87
            TT+YV +++
Sbjct: 1126 TTIYVSILQ 1134

[Close]
BLAST of CmUC09G176600 vs. NCBI nr
Match: XP_016903284.1 (PREDICTED: nuclear pore complex protein GP210 isoform X1 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+MITG  VVKAS FKIK VSLG+
Sbjct: 1066 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSMITGQAVVKASGFKIKAVSLGT 1125

Query: 78   TTLYVHLIR 87
            TT+YV +++
Sbjct: 1126 TTIYVSILQ 1134

[Close]
BLAST of CmUC09G176600 vs. ExPASy Swiss-Prot
Match: F4KHD8 (Nuclear pore complex protein GP210 OS=Arabidopsis thaliana OX=3702 GN=GB210 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +  GI+D  + DSSQ   +  ++H ED +VE V  ++  ++    V  SSFKI    LG 
Sbjct: 1058 LLTGIDDGMTFDSSQYSLMDIMVHIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGI 1117

Query: 78   TTLYV 83
            TTLYV
Sbjct: 1118 TTLYV 1122

[Close]
BLAST of CmUC09G176600 vs. ExPASy TrEMBL
Match: A0A0A0LI22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G839840 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.0e-16
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+ ITGH VVKAS FKIK VSLG+
Sbjct: 1066 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSRITGHGVVKASGFKIKAVSLGT 1125

Query: 78   TTLYVHLIR 87
            TTLYV +++
Sbjct: 1126 TTLYVSILQ 1134

[Close]
BLAST of CmUC09G176600 vs. ExPASy TrEMBL
Match: A0A5A7UUS3 (Nuclear pore complex protein GP210 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00110 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+MITG  VVKAS FKIK VSLG+
Sbjct: 1066 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSMITGQAVVKASGFKIKAVSLGT 1125

Query: 78   TTLYVHLIR 87
            TT+YV +++
Sbjct: 1126 TTIYVSILQ 1134

[Close]
BLAST of CmUC09G176600 vs. ExPASy TrEMBL
Match: A0A1S4E4X8 (nuclear pore complex protein GP210 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502678 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+MITG  VVKAS FKIK VSLG+
Sbjct: 1066 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSMITGQAVVKASGFKIKAVSLGT 1125

Query: 78   TTLYVHLIR 87
            TT+YV +++
Sbjct: 1126 TTIYVSILQ 1134

[Close]
BLAST of CmUC09G176600 vs. ExPASy TrEMBL
Match: A0A1S4E5N1 (nuclear pore complex protein GP210 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502678 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18  IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
           +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+MITG  VVKAS FKIK VSLG+
Sbjct: 907 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSMITGQAVVKASGFKIKAVSLGT 966

Query: 78  TTLYVHLIR 87
           TT+YV +++
Sbjct: 967 TTIYVSILQ 975

[Close]
BLAST of CmUC09G176600 vs. ExPASy TrEMBL
Match: A0A1S4E4X9 (nuclear pore complex protein GP210 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502678 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +A GI+D S+ DSSQ  Y+H L+H EDQIVELV T+D+MITG  VVKAS FKIK VSLG+
Sbjct: 1066 LAAGISDGSTFDSSQFAYMHILVHIEDQIVELVDTDDSMITGQAVVKASGFKIKAVSLGT 1125

Query: 78   TTLYVHLIR 87
            TT+YV +++
Sbjct: 1126 TTIYVSILQ 1134

[Close]
BLAST of CmUC09G176600 vs. TAIR 10
Match: AT5G40480.1 (embryo defective 3012 )

HSP 1 Score: 47.4 bits (111), Expect = 8.4e-06
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 18   IAVGINDRSSMDSSQVVYLHFLLHFEDQIVELVGTNDAMITGHRVVKASSFKIKVVSLGS 77
            +  GI+D  + DSSQ   +  ++H ED +VE V  ++  ++    V  SSFKI    LG 
Sbjct: 1058 LLTGIDDGMTFDSSQYSLMDIMVHIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGI 1117

Query: 78   TTLYV 83
            TTLYV
Sbjct: 1118 TTLYV 1122

The following BLAST results are available for this feature:
BLAST of CmUC09G176600 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59706.11.9e-1565.22hypothetical protein Csa_001846 [Cucumis sativus][more]
XP_011652297.11.9e-1565.22nuclear pore complex protein GP210 [Cucumis sativus][more]
KAA0057251.14.2e-1563.77nuclear pore complex protein GP210 isoform X3 [Cucumis melo var. makuwa] >TYK187... [more]
XP_016903286.14.2e-1563.77PREDICTED: nuclear pore complex protein GP210 isoform X3 [Cucumis melo][more]
XP_016903284.14.2e-1563.77PREDICTED: nuclear pore complex protein GP210 isoform X1 [Cucumis melo][more]
BLAST of CmUC09G176600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4KHD81.2e-0440.00Nuclear pore complex protein GP210 OS=Arabidopsis thaliana OX=3702 GN=GB210 PE=1... [more]
BLAST of CmUC09G176600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI229.0e-1665.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G839840 PE=3 SV=1[more]
A0A5A7UUS32.0e-1563.77Nuclear pore complex protein GP210 isoform X3 OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S4E4X82.0e-1563.77nuclear pore complex protein GP210 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1035... [more]
A0A1S4E5N12.0e-1563.77nuclear pore complex protein GP210 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1035... [more]
A0A1S4E4X92.0e-1563.77nuclear pore complex protein GP210 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035... [more]
BLAST of CmUC09G176600 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G40480.18.4e-0640.00embryo defective 3012 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G176600.1CmUC09G176600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003723 RNA binding