CmUC09G175720 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G175720
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr09: 28979380 .. 28979652 (+)
RNA-Seq Expression	CmUC09G175720
Synteny	CmUC09G175720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCTACGCATCACACTTATGGCTCTAATGGCGCTGTTCTTGCTCACCTCCACCCTGGCTCACTCTCCGGCGCCGTCGCCAAAGAAATCACCCCACCCACTCTCTCCTTCTCACCATCCTTACAAATCGGCTCCTTCTCCTTCTCCTTCTCCTTCGCCTTCCGTTTCTCCCTCTCCTGCTCCTGCCGCTAATTCTGCTCTTTCCAATACTTTCTCCGTCGCTGGTTCTCTCTTTGCCGCCGTCTCCGCCGCTGCTTTCCTCTTCTAG

mRNA sequence

ATGGCTTCCCTACGCATCACACTTATGGCTCTAATGGCGCTGTTCTTGCTCACCTCCACCCTGGCTCACTCTCCGGCGCCGTCGCCAAAGAAATCACCCCACCCACTCTCTCCTTCTCACCATCCTTACAAATCGGCTCCTTCTCCTTCTCCTTCTCCTTCGCCTTCCGTTTCTCCCTCTCCTGCTCCTGCCGCTAATTCTGCTCTTTCCAATACTTTCTCCGTCGCTGGTTCTCTCTTTGCCGCCGTCTCCGCCGCTGCTTTCCTCTTCTAG

Coding sequence (CDS)

ATGGCTTCCCTACGCATCACACTTATGGCTCTAATGGCGCTGTTCTTGCTCACCTCCACCCTGGCTCACTCTCCGGCGCCGTCGCCAAAGAAATCACCCCACCCACTCTCTCCTTCTCACCATCCTTACAAATCGGCTCCTTCTCCTTCTCCTTCTCCTTCGCCTTCCGTTTCTCCCTCTCCTGCTCCTGCCGCTAATTCTGCTCTTTCCAATACTTTCTCCGTCGCTGGTTCTCTCTTTGCCGCCGTCTCCGCCGCTGCTTTCCTCTTCTAG

Protein sequence

MASLRITLMALMALFLLTSTLAHSPAPSPKKSPHPLSPSHHPYKSAPSPSPSPSPSVSPSPAPAANSALSNTFSVAGSLFAAVSAAAFLF

Homology

[Close]

BLAST of CmUC09G175720 vs. NCBI nr
Match: XP_011659718.1 (classical arabinogalactan protein 10 [Cucumis sativus] >KGN43746.1 hypothetical protein Csa_017283 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 64/107 (59.81%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MASLRITLMALMALFLLTSTLAHSPAPSPKKSPHPLSPSHHPYK---------SAPSPSP 60
           MASL ITLMAL ALFL+TST A SPAPSPKKS HP S S  P+          S+PSPSP
Sbjct: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP 60

Query: 61  SPSPSVSPS--------PAPAANSALSNTFSVAGSLFAAVSAAAFLF 91
           SPSP  S S        PA   N A++NTF+V+ SLF AVSAAAFLF
Sbjct: 61  SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

[Close]

BLAST of CmUC09G175720 vs. ExPASy TrEMBL
Match: A0A0A0K7F2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 64/107 (59.81%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MASLRITLMALMALFLLTSTLAHSPAPSPKKSPHPLSPSHHPYK---------SAPSPSP 60
           MASL ITLMAL ALFL+TST A SPAPSPKKS HP S S  P+          S+PSPSP
Sbjct: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP 60

Query: 61  SPSPSVSPS--------PAPAANSALSNTFSVAGSLFAAVSAAAFLF 91
           SPSP  S S        PA   N A++NTF+V+ SLF AVSAAAFLF
Sbjct: 61  SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

The following BLAST results are available for this feature:

BLAST of CmUC09G175720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659718.1	2.4e-11	59.81	classical arabinogalactan protein 10 [Cucumis sativus] >KGN43746.1 hypothetical ...	[more]

BLAST of CmUC09G175720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC09G175720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7F2	1.2e-11	59.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1	[more]

BLAST of CmUC09G175720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G175720.1	CmUC09G175720.1	mRNA