CmUC09G173190 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G173190
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTy3/gypsy retrotransposon protein
LocationCmU531Chr09: 17708356 .. 17708706 (-)
RNA-Seq ExpressionCmUC09G173190
SyntenyCmUC09G173190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTTGTGATGGATAATAAGCAAATTACTTTGAAGGGGGACCCCTCCCTCACGAAATTGGAAGTATCGTTGAAAACCATGAGCAAGACTTGGGAAGCGGAAGATCAACGATTCCTAATTGAGTTTCAAAATTTGGAGATTGAGGGGGATGAGGAAGTAGGTCAAGGGGGAACCAAAATCGAAAGGGAACCTTTACCAGTGATGATACAAACTCTATTGGGAAGGAATAGAGATGTTTTTGAAATTCCCAAGAAATTGCCACCCAAAAGGGAAATTGATCACAAAATCGTAACCATGGAAGGGCAACCTCTGGTGAATGTTCGCCCCTACAAATACGGGCATGCCTAG

mRNA sequence

ATGTCATTTGTGATGGATAATAAGCAAATTACTTTGAAGGGGGACCCCTCCCTCACGAAATTGGAAGTATCGTTGAAAACCATGAGCAAGACTTGGGAAGCGGAAGATCAACGATTCCTAATTGAGTTTCAAAATTTGGAGATTGAGGGGGATGAGGAAGTAGGTCAAGGGGGAACCAAAATCGAAAGGGAACCTTTACCAGTGATGATACAAACTCTATTGGGAAGGAATAGAGATGTTTTTGAAATTCCCAAGAAATTGCCACCCAAAAGGGAAATTGATCACAAAATCGTAACCATGGAAGGGCAACCTCTGGTGAATGTTCGCCCCTACAAATACGGGCATGCCTAG

Coding sequence (CDS)

ATGTCATTTGTGATGGATAATAAGCAAATTACTTTGAAGGGGGACCCCTCCCTCACGAAATTGGAAGTATCGTTGAAAACCATGAGCAAGACTTGGGAAGCGGAAGATCAACGATTCCTAATTGAGTTTCAAAATTTGGAGATTGAGGGGGATGAGGAAGTAGGTCAAGGGGGAACCAAAATCGAAAGGGAACCTTTACCAGTGATGATACAAACTCTATTGGGAAGGAATAGAGATGTTTTTGAAATTCCCAAGAAATTGCCACCCAAAAGGGAAATTGATCACAAAATCGTAACCATGGAAGGGCAACCTCTGGTGAATGTTCGCCCCTACAAATACGGGCATGCCTAG

Protein sequence

MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGHA
Homology
[Close]
BLAST of CmUC09G173190 vs. NCBI nr
Match: KAA0062448.1 (disease resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 4.0e-27
Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 0 

Query: 1   MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTK 60
           M F++ + Q+ LKGDPSLTK E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +
Sbjct: 346 MVFMVGSSQVILKGDPSLTKAECSLKTISKTWEEEDQGFLIEFQKIEIEAGSEVESEKEE 405

Query: 61  IEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
              E    MI+ LL +NR +FE+PK LPPKR +DH+I+  EGQ  +NVRPYKYG+
Sbjct: 406 EGEESNLPMIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGY 460

[Close]
BLAST of CmUC09G173190 vs. NCBI nr
Match: TYK27437.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 4.0e-27
Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 0 

Query: 1   MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTK 60
           M F++ + Q+ LKGDPSLTK E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +
Sbjct: 497 MVFMVGSSQVILKGDPSLTKAECSLKTISKTWEEEDQGFLIEFQKIEIEAGSEVESEKEE 556

Query: 61  IEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
              E    MI+ LL +NR +FE+PK LPPKR +DH+I+  EGQ  +NVRPYKYG+
Sbjct: 557 EGEESNLPMIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGY 611

[Close]
BLAST of CmUC09G173190 vs. NCBI nr
Match: TYK22651.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 6.8e-27
Identity = 66/114 (57.89%), Postives = 84/114 (73.68%), Query Frame = 0 

Query: 3   FVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGD-EEVGQGGTKI 62
           F+    Q+ LKGDPSLTK+E SLKT+SKTWE EDQ FL+EFQ +EI  D E+  +   + 
Sbjct: 5   FMAGTTQVVLKGDPSLTKIECSLKTISKTWEEEDQGFLLEFQGVEINIDTEDENEKEEEG 64

Query: 63  EREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
           E+  LP M++ LL R R +FE PK LPPKR +DH+IVT+EGQ  +NVRPYKYG+
Sbjct: 65  EKSKLP-MVRNLLARYRSIFETPKGLPPKRAVDHRIVTLEGQKPINVRPYKYGY 117

[Close]
BLAST of CmUC09G173190 vs. NCBI nr
Match: TYJ98046.1 (peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 65/115 (56.52%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTK 60
           M F++ + Q+ LKGDPSL K E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +
Sbjct: 19  MVFMVGSSQVILKGDPSLAKAECSLKTISKTWEEEDQGFLIEFQKIEIEAGSEVESEKEE 78

Query: 61  IEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
              E    MI+ LL +NR +FE+PK LPPKR +DH+I+  EGQ  +NVRPYKYG+
Sbjct: 79  EGEESNLPMIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGY 133

[Close]
BLAST of CmUC09G173190 vs. NCBI nr
Match: KAA0040609.1 (DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 7.6e-26
Identity = 63/115 (54.78%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTK 60
           M F++ + Q+ LKGDPSLTK E SLKT+SKTWE ED+ FLIEFQ +EIE   EV     +
Sbjct: 448 MVFMVGSSQVILKGDPSLTKAECSLKTISKTWEEEDRGFLIEFQKIEIEAGSEVESEKEE 507

Query: 61  IEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
              E     I+ LL +NR +FE+PK LPPKR +DH+I+  EGQ  +N+RPYKYG+
Sbjct: 508 EGEESNLPKIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINIRPYKYGY 562

[Close]
BLAST of CmUC09G173190 vs. ExPASy TrEMBL
Match: A0A5D3DUJ0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001340 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.9e-27
Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 0 

Query: 1   MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTK 60
           M F++ + Q+ LKGDPSLTK E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +
Sbjct: 497 MVFMVGSSQVILKGDPSLTKAECSLKTISKTWEEEDQGFLIEFQKIEIEAGSEVESEKEE 556

Query: 61  IEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
              E    MI+ LL +NR +FE+PK LPPKR +DH+I+  EGQ  +NVRPYKYG+
Sbjct: 557 EGEESNLPMIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGY 611

[Close]
BLAST of CmUC09G173190 vs. ExPASy TrEMBL
Match: A0A5A7V4D8 (Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00260 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.9e-27
Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 0 

Query: 1   MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTK 60
           M F++ + Q+ LKGDPSLTK E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +
Sbjct: 346 MVFMVGSSQVILKGDPSLTKAECSLKTISKTWEEEDQGFLIEFQKIEIEAGSEVESEKEE 405

Query: 61  IEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
              E    MI+ LL +NR +FE+PK LPPKR +DH+I+  EGQ  +NVRPYKYG+
Sbjct: 406 EGEESNLPMIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGY 460

[Close]
BLAST of CmUC09G173190 vs. ExPASy TrEMBL
Match: A0A5D3DG25 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00930 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.3e-27
Identity = 66/114 (57.89%), Postives = 84/114 (73.68%), Query Frame = 0 

Query: 3   FVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGD-EEVGQGGTKI 62
           F+    Q+ LKGDPSLTK+E SLKT+SKTWE EDQ FL+EFQ +EI  D E+  +   + 
Sbjct: 5   FMAGTTQVVLKGDPSLTKIECSLKTISKTWEEEDQGFLLEFQGVEINIDTEDENEKEEEG 64

Query: 63  EREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
           E+  LP M++ LL R R +FE PK LPPKR +DH+IVT+EGQ  +NVRPYKYG+
Sbjct: 65  EKSKLP-MVRNLLARYRSIFETPKGLPPKRAVDHRIVTLEGQKPINVRPYKYGY 117

[Close]
BLAST of CmUC09G173190 vs. ExPASy TrEMBL
Match: A0A5D3BG24 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold401G00120 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.4e-27
Identity = 65/115 (56.52%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTK 60
           M F++ + Q+ LKGDPSL K E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +
Sbjct: 19  MVFMVGSSQVILKGDPSLAKAECSLKTISKTWEEEDQGFLIEFQKIEIEAGSEVESEKEE 78

Query: 61  IEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
              E    MI+ LL +NR +FE+PK LPPKR +DH+I+  EGQ  +NVRPYKYG+
Sbjct: 79  EGEESNLPMIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGY 133

[Close]
BLAST of CmUC09G173190 vs. ExPASy TrEMBL
Match: A0A5A7VHA7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001140 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.7e-26
Identity = 64/115 (55.65%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTK 60
           M F++ + Q+ LKGDPSL K E SLKT+SKTWE EDQ FLI FQ +EIE   EV     +
Sbjct: 416 MVFMVGSSQVILKGDPSLAKAECSLKTISKTWEEEDQGFLIAFQKIEIEAGSEVESEKEE 475

Query: 61  IEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRPYKYGH 116
              E    MI+ LL +NR +FE+PK LPPKR +DH+I+  EGQ  +NVRPYKYG+
Sbjct: 476 EGEESNLPMIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGY 530

The following BLAST results are available for this feature:
BLAST of CmUC09G173190 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062448.14.0e-2757.39disease resistance protein [Cucumis melo var. makuwa][more]
TYK27437.14.0e-2757.39Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK22651.16.8e-2757.89reverse transcriptase [Cucumis melo var. makuwa][more]
TYJ98046.11.5e-2656.52peroxidase 64 [Cucumis melo var. makuwa][more]
KAA0040609.17.6e-2654.78DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa][more]
BLAST of CmUC09G173190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC09G173190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DUJ01.9e-2757.39Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7V4D81.9e-2757.39Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5D3DG253.3e-2757.89Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19... [more]
A0A5D3BG247.4e-2756.52Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold401G00120 ... [more]
A0A5A7VHA73.7e-2655.65Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of CmUC09G173190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G173190.1CmUC09G173190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
molecular_function GO:0005488 binding
molecular_function GO:0034061 DNA polymerase activity