CmUC09G172990 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G172990
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRibonuclease H
LocationCmU531Chr09: 16437993 .. 16439103 (+)
RNA-Seq ExpressionCmUC09G172990
SyntenyCmUC09G172990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATGACAACGATTGTTGAAGTACCAAGCCCTTTTGCTTATACGAATAGTCGGGTTGTACCATGGAGATATGAATGTCAATTGATTATGAATGGTGTTAATTCTGCAGCAGCTGGAGGGATGACTCGTAGTGGGAGATGTTGTACTCCATATAACCTGAAGAATAGCCCAAAAGAAGATGAAGTCCGACAACGTAAAGGCAAAGCTGTGGAGATAACAAATGAGAATGATCTAAACGATTTGAGCAAAGCTTTTGTTGGAAAGCCACACTAGCTGGAAAGAAAATCAATCATGAACCTGTCTCCGATGAAGAAGCCCGTGAGTTCTTGAAGTTGATTAAGCAAAGTGAGTACAAAGTAATAGACCAGTTACATCGTACCCCGGCTCGTATATCGATTTTGTCCTTATTCATGCACTCTGAACCACATTGCAAGGTTCTGCTTGATATCTTAAATCAAGCACATGTGGGTCATGACATTTCGATAAATGTACTTAGCGAAATTGTGGAGAATATAACTGCTAAAAATTGCAATTCCTTTACAAATGAAGAGATCCCCTCGCAAGGTACTAGCCACACAAAGGCTTTGCACATATCAGTGAAGTGTAAGAACCATCATGTGGCTAGGGTCCTTGTTGATAATGGATCATCCCTGAACATTATGTCAAGAACCACATTGATGAAACTCCCTATAGATCCATCCCACTTGAACCCAAGTACCATGGTTGTTAGAGCCTTTGACGGTGCTCGTAGAGAGGTGATCTGAGATATAGAAATTCCATTAAAAATTGGGCCCACCACTTTCAACGTACCAGTTTAGGTCATGGATGTTAACTCTTCTTATAGTTTTTTGTTGGGACGACCATGGATCCATTCAGCTGGGGCAGTCCCCTCCTCACTACACAAAAGAGTAAAGTTCAATATGGAAGGTGGTCAAGTCATTGTTTGTCACACCCCCTCCCGGATTACCCACCTGTCCTGGAAGGGAATGTGAAGACAATAAACATCACCTCTCTTGTGACGCATATTGTTCCATCTTACATTCCTATCTCTGCATACATTCTGCTCATATACATACATAGAATTCAGTCATACAACACATGCTTATAA

mRNA sequence

ATGCCCATGACAACGATTGTTGAAGTACCAAGCCCTTTTGCTTATACGAATAGTCGGGTTGTACCATGGAGATATGAATGTCAATTGATTATGAATGGTGTTAATTCTGCAGCAGCTGGAGGGATGACTCGTAGTGGGAGATGTTGTACTCCATATAACCTGAAGAATAGCCCAAAAGAAGATGAAGTCCGACAACCCACACTAGCTGGAAAGAAAATCAATCATGAACCTGTCTCCGATGAAGAAGCCCGTGAGTTCTTGAAGTTGATTAAGCAAAGTGAGTACAAAGTAATAGACCAGTTACATCGTACCCCGGCTCGTATATCGATTTTGTCCTTATTCATGCACTCTGAACCACATTGCAAGGTTCTGCTTGATATCTTAAATCAAGCACATGTGGGTCATGACATTTCGATAAATGTACTTAGCGAAATTGTGGAGAATATAACTGCTAAAAATTGCAATTCCTTTACAAATGAAGAGATCCCCTCGCAAGGTACTAGCCACACAAAGGCTTTGCACATATCAGTGAAGTGTAAGAACCATCATGTGGCTAGGGTCCTTGTTGATAATGGATCATCCCTGAACATTATGTCAAGAACCACATTGATGAAACTCCCTATAGATCCATCCCACTTGAACCCAAGTACCATGGTTGTTAGAGCCTTTGACGGTGCTCGTAGAGAGTTTTTTGTTGGGACGACCATGGATCCATTCAGCTGGGGCAGTCCCCTCCTCACTACACAAAAGAGTAAAGTTCAATATGGAAGGTGGTCAAGTCATTGTTTGTCACACCCCCTCCCGGATTACCCACCTGTCCTGGAAGGGAATGTGAAGACAATAAACATCACCTCTCTTGTGACGCATATTGTTCCATCTTACATTCCTATCTCTGCATACATTCTGCTCATATACATACATAGAATTCAGTCATACAACACATGCTTATAA

Coding sequence (CDS)

ATGCCCATGACAACGATTGTTGAAGTACCAAGCCCTTTTGCTTATACGAATAGTCGGGTTGTACCATGGAGATATGAATGTCAATTGATTATGAATGGTGTTAATTCTGCAGCAGCTGGAGGGATGACTCGTAGTGGGAGATGTTGTACTCCATATAACCTGAAGAATAGCCCAAAAGAAGATGAAGTCCGACAACCCACACTAGCTGGAAAGAAAATCAATCATGAACCTGTCTCCGATGAAGAAGCCCGTGAGTTCTTGAAGTTGATTAAGCAAAGTGAGTACAAAGTAATAGACCAGTTACATCGTACCCCGGCTCGTATATCGATTTTGTCCTTATTCATGCACTCTGAACCACATTGCAAGGTTCTGCTTGATATCTTAAATCAAGCACATGTGGGTCATGACATTTCGATAAATGTACTTAGCGAAATTGTGGAGAATATAACTGCTAAAAATTGCAATTCCTTTACAAATGAAGAGATCCCCTCGCAAGGTACTAGCCACACAAAGGCTTTGCACATATCAGTGAAGTGTAAGAACCATCATGTGGCTAGGGTCCTTGTTGATAATGGATCATCCCTGAACATTATGTCAAGAACCACATTGATGAAACTCCCTATAGATCCATCCCACTTGAACCCAAGTACCATGGTTGTTAGAGCCTTTGACGGTGCTCGTAGAGAGTTTTTTGTTGGGACGACCATGGATCCATTCAGCTGGGGCAGTCCCCTCCTCACTACACAAAAGAGTAAAGTTCAATATGGAAGGTGGTCAAGTCATTGTTTGTCACACCCCCTCCCGGATTACCCACCTGTCCTGGAAGGGAATGTGAAGACAATAAACATCACCTCTCTTGTGACGCATATTGTTCCATCTTACATTCCTATCTCTGCATACATTCTGCTCATATACATACATAGAATTCAGTCATACAACACATGCTTATAA

Protein sequence

MPMTTIVEVPSPFAYTNSRVVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVRQPTLAGKKINHEPVSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARREFFVGTTMDPFSWGSPLLTTQKSKVQYGRWSSHCLSHPLPDYPPVLEGNVKTINITSLVTHIVPSYIPISAYILLIYIHRIQSYNTCL
Homology
BLAST of CmUC09G172990 vs. NCBI nr
Match: KAA0038839.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.3 bits (913), Expect = 2.7e-94
Identity = 184/271 (67.90%), Postives = 209/271 (77.12%), Query Frame = 0

Query: 7   VEVPSPFAYTNSRVVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR-- 66
           VE+P PFAY ++  VPW+YECQ I + V SA  GG+TRSGRC TP NLK+  KEDEVR  
Sbjct: 3   VEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTPDNLKDVTKEDEVRRR 62

Query: 67  ----------------------QPTLAGKKINHEPVSDEEAREFLKLIKQSEYKVIDQLH 126
                                 + TL  K+ +HE VS EEA EFLKLIKQSEYKVI+QLH
Sbjct: 63  KGKAIEMAGEDDLNDLSKVFTEKNTLVEKETDHELVSKEEACEFLKLIKQSEYKVIEQLH 122

Query: 127 RTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEI 186
           RTPARIS+LSLFM+SEPH KVLLDILN+AHVGHD+S+N LSEIVENITA NC SFT+EEI
Sbjct: 123 RTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDVSVNALSEIVENITATNCISFTDEEI 182

Query: 187 PSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRA 246
           P +G  HTKALHISVKCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRA
Sbjct: 183 PPEGIGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVVRA 242

Query: 247 FDGARREFFVGTTMDPFSWGSPLLTTQKSKV 254
           FDGARRE F G T+D  S GSP+ TT K ++
Sbjct: 243 FDGARRELFTGATLDSLSRGSPIFTTPKVEI 273

BLAST of CmUC09G172990 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-87
Identity = 175/252 (69.44%), Postives = 195/252 (77.38%), Query Frame = 0

Query: 2   PMTTIVEVPSPFAYTNSRVVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKED 61
           P    VE+P PFAY ++  VPW+YECQ I + V SA  GG+TRSGRC TP NLK+  KED
Sbjct: 625 PKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTPDNLKDVSKED 684

Query: 62  EVR------------------------QPTLAGKKINHEPVSDEEAREFLKLIKQSEYKV 121
           EVR                        + TL  K+ +HE VS EEA EFLKLIKQSEYKV
Sbjct: 685 EVRRRKGKAIEMAGEDDLNDLSKVFTKKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKV 744

Query: 122 IDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSF 181
           I+QLHRTPARIS+LSLFM+SEPH KVLLDILN+AHVGHDIS+N LSEIVENI A NC SF
Sbjct: 745 IEQLHRTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENIIATNCISF 804

Query: 182 TNEEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPST 230
           T+EEIP +GT HTKALHISVKCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PST
Sbjct: 805 TDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPST 864

BLAST of CmUC09G172990 vs. NCBI nr
Match: KAA0046608.1 (uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa])

HSP 1 Score: 329.3 bits (843), Expect = 3.6e-86
Identity = 174/252 (69.05%), Postives = 194/252 (76.98%), Query Frame = 0

Query: 2   PMTTIVEVPSPFAYTNSRVVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKED 61
           P    VE+P PFAY ++  VPW+YECQ I + V SA  GG+TRSGRC T  NLK+  KED
Sbjct: 379 PKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTLDNLKDVSKED 438

Query: 62  EVR------------------------QPTLAGKKINHEPVSDEEAREFLKLIKQSEYKV 121
           EVR                        + TL  K+ +HE VS EEA EFLKLIKQSEYKV
Sbjct: 439 EVRRRKGKAIEMACEDDLNDLSKVFTEKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKV 498

Query: 122 IDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSF 181
           I+QLHRT ARIS+LSLFM+SEPH KVLLDILN+AHVGHDIS+N LSEIVENITA NC SF
Sbjct: 499 IEQLHRTSARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENITATNCISF 558

Query: 182 TNEEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPST 230
           T+EEIP +GT HTKALHISVKCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PST
Sbjct: 559 TDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPST 618

BLAST of CmUC09G172990 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 6.1e-86
Identity = 173/252 (68.65%), Postives = 193/252 (76.59%), Query Frame = 0

Query: 2   PMTTIVEVPSPFAYTNSRVVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKED 61
           P    VE+P PFAY ++  VPW+YECQ I + V  A   G+TRSGRC TP NLK+  KED
Sbjct: 625 PKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVFATVEGITRSGRCYTPDNLKDVSKED 684

Query: 62  EVR------------------------QPTLAGKKINHEPVSDEEAREFLKLIKQSEYKV 121
           EVR                        + TL  K+ +HE VS EEA EFLKLIKQSEYKV
Sbjct: 685 EVRRRKGKAIEMAGEDDLNDLSKVFTEKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKV 744

Query: 122 IDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSF 181
           I+QLHRTPARIS+LSLF +SEPH KVLLDILN+AHVGHDIS+N LSEIVENITA NC SF
Sbjct: 745 IEQLHRTPARISMLSLFTYSEPHRKVLLDILNRAHVGHDISVNALSEIVENITATNCISF 804

Query: 182 TNEEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPST 230
           T+EEIP +GT HTKALHISVKCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PST
Sbjct: 805 TDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPST 864

BLAST of CmUC09G172990 vs. NCBI nr
Match: TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 7.7e-65
Identity = 134/250 (53.60%), Postives = 173/250 (69.20%), Query Frame = 0

Query: 2   PMTTIVEVPSPFAYTNSRVVPWRYECQLIMNGV--NSAAAGGMTRSGRCCTPYNL----- 61
           P    ++VPSPF + + + VPWRY+CQ+I      N     G+TRSGRC  P NL     
Sbjct: 582 PKKLTIQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGRCYKPDNLTVPLD 641

Query: 62  ---------------KNSPKEDEVRQPTLAGKKINHEPVSDEEAREFLKLIKQSEYKVID 121
                          K   K+ +V  P +A      + V+DEEA EFLK++KQSEYK+I+
Sbjct: 642 GLILEQGRKNEKTNVKEHCKDQDVEMPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIE 701

Query: 122 QLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTN 181
           Q+H TPARIS+LSLF++SEPH KVLLDILN+AHVGHDIS+   S I+ NIT+ N   FT+
Sbjct: 702 QMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTD 761

Query: 182 EEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMV 230
           +EIP +G  HTKALHI VKCK++ +ARVLVDNGS+LNIM ++TL+KLP+D SH+  STMV
Sbjct: 762 DEIPPEGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMV 821

BLAST of CmUC09G172990 vs. ExPASy TrEMBL
Match: A0A5A7TC31 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17928G00010 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.3e-94
Identity = 184/271 (67.90%), Postives = 209/271 (77.12%), Query Frame = 0

Query: 7   VEVPSPFAYTNSRVVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR-- 66
           VE+P PFAY ++  VPW+YECQ I + V SA  GG+TRSGRC TP NLK+  KEDEVR  
Sbjct: 3   VEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTPDNLKDVTKEDEVRRR 62

Query: 67  ----------------------QPTLAGKKINHEPVSDEEAREFLKLIKQSEYKVIDQLH 126
                                 + TL  K+ +HE VS EEA EFLKLIKQSEYKVI+QLH
Sbjct: 63  KGKAIEMAGEDDLNDLSKVFTEKNTLVEKETDHELVSKEEACEFLKLIKQSEYKVIEQLH 122

Query: 127 RTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEI 186
           RTPARIS+LSLFM+SEPH KVLLDILN+AHVGHD+S+N LSEIVENITA NC SFT+EEI
Sbjct: 123 RTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDVSVNALSEIVENITATNCISFTDEEI 182

Query: 187 PSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRA 246
           P +G  HTKALHISVKCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRA
Sbjct: 183 PPEGIGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVVRA 242

Query: 247 FDGARREFFVGTTMDPFSWGSPLLTTQKSKV 254
           FDGARRE F G T+D  S GSP+ TT K ++
Sbjct: 243 FDGARRELFTGATLDSLSRGSPIFTTPKVEI 273

BLAST of CmUC09G172990 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 7.0e-88
Identity = 175/252 (69.44%), Postives = 195/252 (77.38%), Query Frame = 0

Query: 2   PMTTIVEVPSPFAYTNSRVVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKED 61
           P    VE+P PFAY ++  VPW+YECQ I + V SA  GG+TRSGRC TP NLK+  KED
Sbjct: 625 PKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTPDNLKDVSKED 684

Query: 62  EVR------------------------QPTLAGKKINHEPVSDEEAREFLKLIKQSEYKV 121
           EVR                        + TL  K+ +HE VS EEA EFLKLIKQSEYKV
Sbjct: 685 EVRRRKGKAIEMAGEDDLNDLSKVFTKKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKV 744

Query: 122 IDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSF 181
           I+QLHRTPARIS+LSLFM+SEPH KVLLDILN+AHVGHDIS+N LSEIVENI A NC SF
Sbjct: 745 IEQLHRTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENIIATNCISF 804

Query: 182 TNEEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPST 230
           T+EEIP +GT HTKALHISVKCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PST
Sbjct: 805 TDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPST 864

BLAST of CmUC09G172990 vs. ExPASy TrEMBL
Match: A0A5A7TUT4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001540 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.7e-86
Identity = 174/252 (69.05%), Postives = 194/252 (76.98%), Query Frame = 0

Query: 2   PMTTIVEVPSPFAYTNSRVVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKED 61
           P    VE+P PFAY ++  VPW+YECQ I + V SA  GG+TRSGRC T  NLK+  KED
Sbjct: 379 PKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTLDNLKDVSKED 438

Query: 62  EVR------------------------QPTLAGKKINHEPVSDEEAREFLKLIKQSEYKV 121
           EVR                        + TL  K+ +HE VS EEA EFLKLIKQSEYKV
Sbjct: 439 EVRRRKGKAIEMACEDDLNDLSKVFTEKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKV 498

Query: 122 IDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSF 181
           I+QLHRT ARIS+LSLFM+SEPH KVLLDILN+AHVGHDIS+N LSEIVENITA NC SF
Sbjct: 499 IEQLHRTSARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENITATNCISF 558

Query: 182 TNEEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPST 230
           T+EEIP +GT HTKALHISVKCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PST
Sbjct: 559 TDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPST 618

BLAST of CmUC09G172990 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.9e-86
Identity = 173/252 (68.65%), Postives = 193/252 (76.59%), Query Frame = 0

Query: 2   PMTTIVEVPSPFAYTNSRVVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKED 61
           P    VE+P PFAY ++  VPW+YECQ I + V  A   G+TRSGRC TP NLK+  KED
Sbjct: 625 PKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVFATVEGITRSGRCYTPDNLKDVSKED 684

Query: 62  EVR------------------------QPTLAGKKINHEPVSDEEAREFLKLIKQSEYKV 121
           EVR                        + TL  K+ +HE VS EEA EFLKLIKQSEYKV
Sbjct: 685 EVRRRKGKAIEMAGEDDLNDLSKVFTEKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKV 744

Query: 122 IDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSF 181
           I+QLHRTPARIS+LSLF +SEPH KVLLDILN+AHVGHDIS+N LSEIVENITA NC SF
Sbjct: 745 IEQLHRTPARISMLSLFTYSEPHRKVLLDILNRAHVGHDISVNALSEIVENITATNCISF 804

Query: 182 TNEEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPST 230
           T+EEIP +GT HTKALHISVKCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PST
Sbjct: 805 TDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPST 864

BLAST of CmUC09G172990 vs. ExPASy TrEMBL
Match: A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 3.7e-65
Identity = 134/250 (53.60%), Postives = 173/250 (69.20%), Query Frame = 0

Query: 2   PMTTIVEVPSPFAYTNSRVVPWRYECQLIMNGV--NSAAAGGMTRSGRCCTPYNL----- 61
           P    ++VPSPF + + + VPWRY+CQ+I      N     G+TRSGRC  P NL     
Sbjct: 582 PKKLTIQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGRCYKPDNLTVPLD 641

Query: 62  ---------------KNSPKEDEVRQPTLAGKKINHEPVSDEEAREFLKLIKQSEYKVID 121
                          K   K+ +V  P +A      + V+DEEA EFLK++KQSEYK+I+
Sbjct: 642 GLILEQGRKNEKTNVKEHCKDQDVEMPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIE 701

Query: 122 QLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTN 181
           Q+H TPARIS+LSLF++SEPH KVLLDILN+AHVGHDIS+   S I+ NIT+ N   FT+
Sbjct: 702 QMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTD 761

Query: 182 EEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMV 230
           +EIP +G  HTKALHI VKCK++ +ARVLVDNGS+LNIM ++TL+KLP+D SH+  STMV
Sbjct: 762 DEIPPEGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMV 821

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038839.12.7e-9467.90Gag-pro-like protein [Cucumis melo var. makuwa][more]
KAA0061241.11.4e-8769.44uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa][more]
KAA0046608.13.6e-8669.05uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa][more]
KAA0065293.16.1e-8668.65uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa][more]
TYK21788.17.7e-6553.60uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TC311.3e-9467.90Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold179... [more]
A0A5A7V6817.0e-8869.44Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TUT41.7e-8669.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VAU52.9e-8668.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DEB33.7e-6553.60Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 76..236
e-value: 4.2E-6
score: 28.3
NoneNo IPR availablePANTHERPTHR33240OS08G0508500 PROTEINcoord: 11..294
NoneNo IPR availablePANTHERPTHR33240:SF7GAG-PRO-LIKE PROTEINcoord: 11..294
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 177..225
e-value: 7.00971E-7
score: 44.6348

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G172990.1CmUC09G172990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process