CmUC09G160400 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G160400
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRibosomal_L28e domain-containing protein
LocationCmU531Chr09: 369798 .. 370211 (-)
RNA-Seq ExpressionCmUC09G160400
SyntenyCmUC09G160400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAAGTCAAAGGAAGTGCCTTCACAACACGCATTTGGGCAGCATGTGTTGCTTGTCCTAGTTGCCATCTCTGCCATATAAATATGACCAAAACCAGATTGTCTCTACGGTTGAGCCAAATCCTTGGCTGCTTGACGAGCAGCCAAGAAAAAAAGACCATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGACTAAGCGCCTCGAAAGGCATGATGCTGCCAGAAAGCGCAGGAGATCTTTTGATCTCTGTTTTTCATACCCAGAGCTACCAATGGAACGTGGACAATCTTTGAAAGATATGGATTCAGAGAAGTTGAAGACTGGTATCAAGAAATGGGCTAAAGCTGTGGTGGCTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCGCTAA

mRNA sequence

ATGTTCAAAGTCAAAGGAAGTGCCTTCACAACACGCATTTGGGCAGCATGTGTTGCTTGTCCTAGTTGCCATCTCTGCCATATAAATATGACCAAAACCAGATTGTCTCTACGGTTGAGCCAAATCCTTGGCTGCTTGACGAGCAGCCAAGAAAAAAAGACCATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGACTAAGCGCCTCGAAAGGCATGATGCTGCCAGAAAGCGCAGGAGATCTTTTGATCTCTGTTTTTCATACCCAGAGCTACCAATGGAACGTGGACAATCTTTGAAAGATATGGATTCAGAGAAGTTGAAGACTGGTATCAAGAAATGGGCTAAAGCTGTGGTGGCTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCGCTAA

Coding sequence (CDS)

ATGTTCAAAGTCAAAGGAAGTGCCTTCACAACACGCATTTGGGCAGCATGTGTTGCTTGTCCTAGTTGCCATCTCTGCCATATAAATATGACCAAAACCAGATTGTCTCTACGGTTGAGCCAAATCCTTGGCTGCTTGACGAGCAGCCAAGAAAAAAAGACCATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGACTAAGCGCCTCGAAAGGCATGATGCTGCCAGAAAGCGCAGGAGATCTTTTGATCTCTGTTTTTCATACCCAGAGCTACCAATGGAACGTGGACAATCTTTGAAAGATATGGATTCAGAGAAGTTGAAGACTGGTATCAAGAAATGGGCTAAAGCTGTGGTGGCTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCGCTAA

Protein sequence

MFKVKGSAFTTRIWAACVACPSCHLCHINMTKTRLSLRLSQILGCLTSSQEKKTMSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR
Homology
BLAST of CmUC09G160400 vs. NCBI nr
Match: KAA0059447.1 (hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK03877.1 hypothetical protein E5676_scaffold347G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-31
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGI 114
           MSVKKSLSLTKAEE KRL RH+AARKRRRSFDLCFSYPELPMERG+SLK+M+SEKLKTGI
Sbjct: 1   MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPELPMERGKSLKEMNSEKLKTGI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWRR 138
           KKWAKAVVAYARTVS+RFGS RR
Sbjct: 61  KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of CmUC09G160400 vs. NCBI nr
Match: KGN45542.1 (hypothetical protein Csa_016865 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 5.4e-31
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGI 114
           MSVKKSLSLTKAEE KRL RH+AARKRRRSFDLCFSYPE+PMERG+SLK+M+SEKLKTGI
Sbjct: 1   MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPEIPMERGKSLKEMNSEKLKTGI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWRR 138
           KKWAKAVVAYARTVS+RFGS RR
Sbjct: 61  KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of CmUC09G160400 vs. NCBI nr
Match: KAG6593505.1 (hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 6.6e-29
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGI 114
           MSVKKSLSLTKAEE KR  RHDAARKRRRSFDLCFS P+L MERG+SLK+MDSEKLK+GI
Sbjct: 1   MSVKKSLSLTKAEEAKRSARHDAARKRRRSFDLCFSSPKLQMERGKSLKEMDSEKLKSGI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWRR 138
           +KWAK+VVAYAR VS+RFGSWRR
Sbjct: 61  RKWAKSVVAYARQVSDRFGSWRR 83

BLAST of CmUC09G160400 vs. NCBI nr
Match: KAG6575488.1 (hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-27
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGI 114
           MSVKKS SLTKAEE KR  RHDAARKRRRSFDLCFS PELPME G+SLK+MDSEKLK  I
Sbjct: 1   MSVKKSFSLTKAEEAKRPGRHDAARKRRRSFDLCFSSPELPMEYGKSLKEMDSEKLKDAI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWR 137
           +KWAKAVVAYARTVSNRFGS R
Sbjct: 61  RKWAKAVVAYARTVSNRFGSRR 82

BLAST of CmUC09G160400 vs. NCBI nr
Match: XP_034209907.1 (uncharacterized protein LOC117623145 [Prunus dulcis] >VVA24273.1 PREDICTED: PHAVU_010G142400g [Prunus dulcis])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-13
Identity = 51/98 (52.04%), Postives = 62/98 (63.27%), Query Frame = 0

Query: 55  MSVKKSLSLTK------AEETKRLERH----------DAARKRRRSFDLCFSYPELPMER 114
           MSVKKSLSL           TK+ ++           D    +RR FD CFS+ E+  E+
Sbjct: 1   MSVKKSLSLNNGGAGMGGASTKKTKKSYSLNNGGNGGDVVTAKRRRFDRCFSFMEISTEQ 60

Query: 115 GQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR 137
           G+SLKDMDSEKLK+GI++WAKAVVAYAR VS RFG  R
Sbjct: 61  GKSLKDMDSEKLKSGIRRWAKAVVAYARQVSGRFGGTR 98

BLAST of CmUC09G160400 vs. ExPASy TrEMBL
Match: A0A5A7UXU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00720 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.5e-31
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGI 114
           MSVKKSLSLTKAEE KRL RH+AARKRRRSFDLCFSYPELPMERG+SLK+M+SEKLKTGI
Sbjct: 1   MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPELPMERGKSLKEMNSEKLKTGI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWRR 138
           KKWAKAVVAYARTVS+RFGS RR
Sbjct: 61  KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of CmUC09G160400 vs. ExPASy TrEMBL
Match: A0A0A0KB03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGI 114
           MSVKKSLSLTKAEE KRL RH+AARKRRRSFDLCFSYPE+PMERG+SLK+M+SEKLKTGI
Sbjct: 1   MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPEIPMERGKSLKEMNSEKLKTGI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWRR 138
           KKWAKAVVAYARTVS+RFGS RR
Sbjct: 61  KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of CmUC09G160400 vs. ExPASy TrEMBL
Match: A0A5E4F872 (PREDICTED: PHAVU_010G142400g OS=Prunus dulcis OX=3755 GN=ALMOND_2B014602 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 51/98 (52.04%), Postives = 62/98 (63.27%), Query Frame = 0

Query: 55  MSVKKSLSLTK------AEETKRLERH----------DAARKRRRSFDLCFSYPELPMER 114
           MSVKKSLSL           TK+ ++           D    +RR FD CFS+ E+  E+
Sbjct: 1   MSVKKSLSLNNGGAGMGGASTKKTKKSYSLNNGGNGGDVVTAKRRRFDRCFSFMEISTEQ 60

Query: 115 GQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR 137
           G+SLKDMDSEKLK+GI++WAKAVVAYAR VS RFG  R
Sbjct: 61  GKSLKDMDSEKLKSGIRRWAKAVVAYARQVSGRFGGTR 98

BLAST of CmUC09G160400 vs. ExPASy TrEMBL
Match: A0A498IZM5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-13
Identity = 47/83 (56.63%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 54  TMSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTG 113
           T   +K+LSL   E  K     D    +R  FD CFS+ E+  E G+SLK+MDSEKLK+G
Sbjct: 21  TKKTRKTLSLNNGEAGK--SSGDVVAAKRTRFDRCFSFMEVSTEPGKSLKEMDSEKLKSG 80

Query: 114 IKKWAKAVVAYARTVSNRFGSWR 137
           IK+WAKAVVAYAR VS+RFGS R
Sbjct: 81  IKRWAKAVVAYARQVSDRFGSSR 101

BLAST of CmUC09G160400 vs. ExPASy TrEMBL
Match: A0A2P5FE88 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-13
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGI 114
           MSVKK+LSL + E  K  +       RR  +  CFS+ ELPMERG++LK+MDS KLK  I
Sbjct: 1   MSVKKTLSLNRGEAAKGHQ----ISVRRGKYGRCFSFVELPMERGKTLKEMDSNKLKFEI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWR 137
           K+WAKAVVAYAR VS RFG  R
Sbjct: 61  KRWAKAVVAYARQVSGRFGGTR 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059447.13.2e-3190.36hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK038... [more]
KGN45542.15.4e-3189.16hypothetical protein Csa_016865 [Cucumis sativus][more]
KAG6593505.16.6e-2984.34hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575488.12.8e-2785.37hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_034209907.13.0e-1352.04uncharacterized protein LOC117623145 [Prunus dulcis] >VVA24273.1 PREDICTED: PHAV... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UXU01.5e-3190.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KB032.6e-3189.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1[more]
A0A5E4F8721.4e-1352.04PREDICTED: PHAVU_010G142400g OS=Prunus dulcis OX=3755 GN=ALMOND_2B014602 PE=4 SV... [more]
A0A498IZM54.2e-1356.63Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1[more]
A0A2P5FE884.2e-1358.54Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36484:SF2OS01G0558700 PROTEINcoord: 55..137
NoneNo IPR availablePANTHERPTHR36484OS01G0558700 PROTEINcoord: 55..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G160400.1CmUC09G160400.1mRNA