CmUC08G159840 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G159840
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	type 2 DNA topoisomerase 6 subunit B-like isoform X4
Location	CmU531Chr08: 28248699 .. 28258024 (-)
RNA-Seq Expression	CmUC08G159840
Synteny	CmUC08G159840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTTGCTTCTCTTCAAGATCTCTACCTACATGTAAGTTCAATCTTGTGGAACCGAGACCGATTCTCTTTATCTTCTTCTTCTTTTCTTTTTTTCCCCCTGAGATTCAAAGCATGAGAGAGATTTTAAAGAAACATCGTCCTGAGCTTGATTAGTGCAGCTAATTTCTTCGGCAATGCGGAGGTGCATCTGTTCCGAACGACTTTGCAGGCTCTCAGTTCTTCTGCAACGCTCTCCCGCTTCCGATCCTCCACTTGTTTGTATTTCCAGTAAGTTATCTCCCACGCTCTTTCTCACCGGCGATTCTGGAAATATTTCGTAATCTCGTTAAGTCCTTTTCAATTTTGGTTTATCACACATTTTCACGACTCTGTTCTCAGTTCGTCACGTTCGTTTCAACGAATTTGAAAGAAGCACCAAAGCTTGAAAAATTACAACGAAAACTTCGAAACAGAGTAATATTCTTGATTATTTATTTATTATTATTTTTAAATGTAGTTTCAGATACCGGCCTTGGAAGCTGCATACAGGAGTTTCAGGATTTGAAGTGCCCCGTTGAAGGTATCCTTGCCGAAACGTGGGGTGAGTAATTGACTCTTGCTCCTCTGGCACTCTTGCAGCATTTGATGAATAGTAAAATGCTTTGATTAATACCTCTACATTATTTAACTATCGTTCGTGTTAATGTTTTATTGATTTCTTAACCTGTGTTATTCAACAGAGTAGCTCATGTATAGCAGTAGACATCTTTATTTTATTCCTGAGTATGCGTAACTTCTCTTACCGTTAGCTGCATCTCTACCTATAAGGCAACGCGTGCATGCGTACATTGTTTAACAAACGATTCCTCATATTTTCTCCTTAGTCAACTAAGCTAAGCTGAGGCTTTTCTCAATAACCATCGTCCTCTCAAAAAGCTGCATTCAGCAAACCATACTTCATCAAAATTTTATTTGTTTCCTGCAGTTACCTCGGCTATATATATATATATATATATCTTCACGTGAAGTCATTTAAATACTCTGCACCAGGGGTTGTTATGTGGATTAATATATTTCCGGTATTATATGCAGACGGAGTTGTTTATGTGAGAACTACCAGTAAGTTCCATTTTCTCAAAATTACTTTAGTTTGAGTTAATGACCCGGGGTAGAATGAAATTGACATCTACATCAACTTCTCCAAGGAAGAGTCGATAGCTGTATCCTAGAATTAGAGATCCCTTCCTTATCATTTATCAACACTTTCTGTACTTTTTTACTGTATATGGAATTTTATTTCACTTCCTAAGTGCACAGCAGCATAGGTGTAGGATAATTTCAGTGGGAACGGATGATTAAGAAAACAAGATGGAATTCTAAATTTATGGAAAAAAATTGATTTATCAACAATTTGCCAGCCCTTCTAGCATATTATTATACAATATGAGTTGTTTTGCTCCATATAGTTGTACTCTGTTTTTTTAAATCTTGTGCCAATTGTACCTATACTAATGGCCCTGTTGAGATTGCAGATATTTTTGATACCAAGATAAGTTGCTATCAGTTGAATCTGAAAGAGAATGTCAGTACCAGGAAGCCAATTTGGCTACCTTCAAACATTAAGCATGGTGTGAAATTCAGGTATGGAACCGTTTAACTCTTTGGTCATTTCTCTTTTTTTTTTATTTGGATTAGGCAGTAATCGGACCTTTCTTAACAAATTAATTAGTGGAACCGAAGTGTGCTTGTCTGTTTATGAAAGTGTTGATGTTTTGCTGGCGGAGATGAACTGCTTCTTTCAGAAGGTCTCTTTCTTCTTTATTGTTGAAACCATTACCAATTACTATCTTAGGATAACATTTGAATGGATCTTGACTATTTTGTTTGCAGTATGCCTGCTATTTTACTGCTTCAATATTTTTCACATGTCTTCTCTTCCTTGTCACCTTCGCTGGAATAATATGGTTTTAGTTGCTGTTTGCACAAAATGAATAAGTCAATATGCACAATGCTTCCATGTGGAGCACTGCCCAGTTGCAATTAGCTAAAGTGCCTCTTTATACAAAACAGAATGAATCGGTCCTTAGATGAAATATCAAGTTTGGAGTCATGGGTAATTATTATCAAAAGAAAATCACACCAAATCATACCCATAAACTATTGCTTTAATCTTGTGCTTATTTCATGCCTTAAATTGTAGATTTTGTTGATGTATAATTGTTGTAATTGTTGCTGTAATTCTGCATTATTTATTAGTGAAGTTTATCACTCTTGTATATAAAAAGGACCACAATGGTCTAAATATCACATCAAGGAAAATGCTTTCAATTATCAATTATTTCTCTATTTGTTCATGGTATCAGAGCTCTCTCATATATAAAATTCCAATTTTTTCCCCTTGTACGTTCCTATCCTTCCAACTTCAATGGACACTGAATCCACCAATAATAAACCTTCTGCTACAATACCCAATACCTCCAACATCTCTGCTTCATCAACAACTCCTTCAAGCCATGCACCTGCAATCACTTAACCACTTTTCCTCTTGTCCAACATTTGCAACTTGGTGCCTCTCAGATTGGATTCAACCAACTACGTTCTCTGGAAGTATCAAGTTTCCTCAATTTTGAAAGCTCATTCTCTATTTGGGCATATTGACGAATCTCTTCCTCGACCCTCCAAATTCATTTGTTCATCAACTGGGATCAATACCACAGAGGTTAGTTCTGAATATCTTCAATGGATTTCCATAGATCAAGCTCTCATTGCCTTAATCAATGCAACCTTATCATCATCTGGTCTTGCCCATGTTGTTGGCTCTGAATCTTCAAAGGATCTCTGTTTTTCTTTGGAAAAACGGTATTCTTCAAATACTCGACCTAATATATTCGATTTACGATCTACATTATATACTATAAAAAACCTTTCTTCTGAATCCATTGAGAAATACACTTGCTGAATTAAGGAATTAGTTGACAAGCTTGCTGCAGCTTCTGTTTCTATTGAGGATGAAGAAATTTTAGTTCATACCTTGAATGGCTTACCATCCGAACTCAATGCTTTTCGGACATTCATACGGACTCGAAGTGGATCTATATCTCTCGAGGACCTCCATACATTGCTTGATGCTGAAGAAAAGACAATCCAAAAAAATACGCATGTTGAACCAACACCCACTTCAATGGTTGCGTTCAAACACTCCCCTCACAGAGCCCTAATTCACGTGGAAGAGGATGACGCCAAAGTGGAAGAGGATTTGCAAATCACTTTTCTAATTCACATAGACCCATGAATAATGGGCCTCTCCTCAACATGCGTGGATCCAACCCAATTTCACTTCCTTTTTCTCCAATTGGATTAGATACCCCAATTCCATTTAACTCCCGTGGCATTTTGGGTTTAGGTCATGGGTCAGGCTCTAATTTTGGGTCAGATGGTGCTCTCGGGTCTCAACATACTAGAGGGCAAATTTTCTACCAAATATGCTCCAAATCTAGTCATGGAGCACTTGATTGCTACCAAAGAATGAATTTCTCTTACCAAGGACGCCATCCACCATCTCAATTGGCTGCTATGGCGGTTAATTCTATGAACACCCAATCTTCTGCTAAAAACTCTAATGGTTTTTGGCTATCTGATAGTGGTTGTAACATTCATATGACTAACAGCTTGGCAAATCTCAATTTATCCAACAATTATAATGGTGACGAATCTATCACAGTGGGTAATGGTCAACCTATAAAATTCAACATACTGGTAGTGGACACTTTCTACCTTTTCTCATACCTTTAATCTTTCCAAAATACTTCATGCTCCAGATCCAGCGGCTAATCTCTTATCCATTCATAAATTTTGTCTTGATAATAATTGCATTTTTATTTTTGACACTAACTGGTTCCTCATATAGGATAAAGTCTTTGGCAAAACCTTATACAAAGGCTCTAGTATCAATTGCCTCTATCCTATTCCAAGTCCATATGCTTTATCTTCTTCTAGTTTGCAACCCAAAAATTACATTTTCTTGCAAAAAAGGAGTGTTCTCTATGGCATTATTGGTTTGGACATCCTGCTTCAAGAATTTTTAAGTCTAGTTTATCACATCTTGGTCTTTCTTTATCTTCTTTTATTTCTACCTGCGAATGCATCAGTTGTTTGCTAAAATGTCTAAGCTATCTTTCGCTCTGTCTCTATCTTCTTCTCTCACACCTGTTGATCTTATTCACAGTGATGTATGGGGTCCATCTCCCATTACTATGCCTTTTCAACTGCTGTTTTTCTAATAAATCGAATGTCATCTTCTTCTCTTAATATGTTATCTTTGAAAAATTCTTTGGTTACCCTCCTGATTTGCATCGTTTAAAAGTTTTTGGGTGTGCATGTTATCCTTTGTTAAAACCATACATCAAACATAAACTAGAACCTAAAACCACTCAACACACTTTTCTTGGCTATACTCTTGATTTCAAAGGGTACATATTTTATAATCCTCTCACTAAAAAGTTCATCATTTCTTGACATGTCATTTTCAATAAAATTATTTTCCCCTTTTCCCAATCGGTCTCTCCCAATATATCCTCTTCCAACTCTGCAGAGACACAACTCCTTTACTCACTCTTTTAAATCTTTCTCAAAACGTATCTCTCAATAACATACCAACAATAACATACCAACTACTACTCCAACTCCATCTATCCATCCCACTGTTGACATTAATTCTTCTTCATATATGAATACTGATGCTTCTTGTCAGTCTTTGAATGTTACACCTTCTACAGATTTGCCCTCACCAAATGAGACAAGAGACATTGCTCCACCCATTGTAAATTCAGTTTCACATACAAATCTCAATACTCACTTGATGCAAACACGGGGTAAATCTGACATTTCAAACCAAAGGCGTTTCTCCCTACATTGGCAACACCTACTCCACCTACTCCCACTTTATATACTGAGGCCTCATAATTTCCTGTAGGGAGATCTGCCATGTGTGAGGAATTCAATGCCCTTGAAGAACAAGGTACATGGTCTTTAGTACCTCATTTACCTTCTATGGATGTTGTAGGTTGTAAATGGGTGTTTCAACCAAAATGTGACACTGTTGGCTCTATTGCTCGATTAGTTGCCAAAGGTTATTATCAAGTTGAAGGCTTTGATTTTGAAGAAACCTTTAGCCCCGTTGTGAAGAAGCCAACAATCCGTGCTATACTTGCTCTTGCAGCTCAATATCAATGGCCATTAACTCAGACGTAAAAAATGTCTTTCTTCATGAACACTTAAAGGAGAAAGTTTATATGTCTCAACCTCCAGGCTTTTTGGATAAATCTTGCCCTACTCATGTTTGTCTTTTTCACAGGAGTTTTTATGGTCCTAAACAGGCTCTTCGGGCTTGGTTTAATCGTTTTACATCCCACTTATTTACTTTGGGATTTGTTGCTTCCCCTGCTGCCTCATCCTTATTCATCTATTCTATTGGTTCTTCATTAACCTACTTGTTACTTTATATGGATGATATCGTTGTTACAAGTTTTAACTACTCTTCCATCTCTATATTGAAGAGCCAATTGGCAATTGAATTTCAGATTTCAGATTTCAGATCTTGGCCCATTAAAATACTTTCTTGGCTTGGAAGTCCATTCTTCAGCTGATGGTATTTTTGTCTATCAAGCAAAGTACCTTATTGATGTACACACTTCAGGAATGTCTGCTGCTAAGTCATGCTCATCTCCTATATCCACCTCTGTTGATCTATGCATCTGGCCCATTATGCAATGATGCCAACCTCTATCGTCAGCTAGTTGGCTCACTCCGATATCTCACATTTATGCGACCTGATATCGCCTTTGCAGTTAATCGAGTTAGCCAATTTATGCATCGTCCAACTGTTGTTCATTTCTTTGCTGTCAAGCGTATCCTACGGTACCTTTGTGGATCTAAGCAACTTGGTGTTATGTACTGTTGAGGTAATTTGTCTCTAATGCCTTTTGTGACTCTGATTGGGTTGGAGATATATCTGATCATCATTCGACTTCTGGCTATATTGCTTTTCTTGGGTTCAATCCAATATCTTGGTCTTCCAAAAAGCAACCAACTGTTTCACGCTCATCTACAGAAGCGGAATATTGTTCTCTTGCAACCACCACCGTTGACCTTTATTGGATAGACAACTTCTTCACGACCTTCATGTTCCTTTGACAGCCCCTCCAACATTATGGCGTGATAATATATCTGCCATCTCCTTAGAAAACAATCCTGTCTTTCATGCTCGAACGAAGCACATTGAAATTGACTATCACTTTCTCCGAGAAAAGGTTGTTTGCAAAGATATTTCTATCTGCTTTGTATCTTCCAAAGATCAACTGGCATATCTCCTAACCAAACCACTCTCCTCACAAACGTTCCTATCTCTACGTGACAAATTTCTGACTTATTTCTAGTCTTCAGTTTGCAGGCGGATATTAGAAGAAAATCACACCAAATTATACCCATAAATTATTGCTTTAATTATATTGTAGGTTTCATTGATGTATAATTGTTGTAATTCCGCACTATTTATTAGTGAAGATTATCACTCTTGTATATGAAAGGACCACAATGGTCTAAATGTCACATCAAGGAAAATACTTCCAATTATCAATTATTTCTCTATTTGTTCAATTATAATTATGAACTACTGCTCTTGCACTCTTCCTATCCTGGACTGTAACTGTGACCATTACTCAAACCACTTGATGGCCAGCCTTTACCCATAGTTTCTTAAGGATAATTGTAAGGGCATTCTTATGCAGTCAAACCAATAAAATGGAAATGAACGGTTTGTTTGTCTGACTTTCTTTTAAGCATTAAAAACAACATGGTGGATTCAATGAAATAGAAAGTGAAAGTGAAAACGAAGCTTTCACTGAAAAGGTATTCTTTGCTCTTTAAAGTTGTACAATTGAAGTTTACGGGGGTTTTAGGATACTCTGCTATATTCTTAAAACATACAATGCATTATCGTATCTCATTTTAGGGATACAATTTCAAGAGACCGAAGCAAGGAGATCAGTTTTGTCATTACTTTGCTTGTGATGCGCCTAATTAGTCGTTAGTGTAGATCTCTTGCAAGCCCATGCGGGATAAATTAATTTTTTCAGTAGAGTAGAGTTCGAATTTTGTTTTGAATTCTTAACTTTTTATGATTTATTATACCATTGATATTGAGGAGCTTTAAAATCATCTCAAATCAACACCTCTGGTGTTTCAACTGTGCAATTTATATTTGTCAAGGTGTTTTCCTTTATTGAATTATAGTCACATATCTTACTTGGGTGTGTCCCACTTTATTTTGCAGATTCTCATTCTAAAAGTTCCAGTAAGTTGAACTCGCTGCTCTTTATCTGACTTTTGATCCACGTATTTTTAATTAGGCTTGATTTTGTCAATATAATCTCTCTCATACTGTAATATACTCAGTCGTGCATGACTTGGCAAAGGTATCGTGTTAGGAATGAAAGATAAATGTATCATGTACAAAAAATATGCATCCAGAAACCTGAACTGATCAAATAATCTACATGAATATATATATTTCAAATTACCTTACTTTCTATGGCGATGGTTTAGCTCTAAAGGAATTCATAAGCTTTTTGAATGTCACAAGAATATTGCAATGGAAGTTGTGGCCGACGGCCAGGATATCCCAGGGTCACGTAATGATGCTGTTTTCCTGGAAAACTTGCCCGCTAGTTCTTCTTTCACAGCCTCAACCCTTGATTATTTGAAATTGGGCCTTGAGGATTATGTATTAAAGCATGGATCTAGTCTGATAGGCGACTCTTGTTTCCCTAACAGGTGAGTTTGTCACTTCAATACGCTAACTCGTTAGACTAAACTTCTCTGGTTTTAGGTAGTTATAAAGAAAATAAATAATCTCCTGATGAGATATGATGATACTTCGTTCCACATTTTTGCTAGGTTCAGGAGAATTTATTCCATCTCAGCACTTGCAGTTTAAATAATTTAGCTGTTATAAAAATTAAAAGAAAAACAAAGCTGCTAAACTCCCCTAAAATGTGCATGTTATTGTTTTTTGTCATTTTTTTATTCTTTTTGTTATTTGCTCTTTTTCTTCCAAATTTCAAACTTTAAGGGATGATCTGAGGAGTGGGAGTGGAATGGTTTGTGAAGACAAGCATAAAACTACCAAACTGGTAGTGGAGGCAGCGGTTGTGATTAGTGAAATATCAAATTCGGCTAATAATTGCTTTGGAGCAAGATGCTCTGATACAGAGGTTGTTTGATCTATTACATCCCTTCCTTCCGTTCTTTGATGATTACAACTCTGGCTTACCTTTGATTATTGCACATGGTTACGTAGGTTCTCTGTTTTAAAGATTTTGCCCCTTGTTCGATCTCTGAGGGATTTCTAAAGGCATTAACAGACATTGACTGGAAGCGTTATGGCTTGACTTTGGAATGTGCCATCGATCAAAGAAGCCATGCACTATTAAAGTGGGGACCCACGCCCTTATCTTTTCATATTCATATTGCTGTTCACTGCCATCACAAGGTAATATTCATAAGATCTTTATGTTTAAAGGTTAATAATGAACGACTATTTTTTTTCTTCCCTAAAAAAAATGAACGATTATTTTGATCGTTATTTTATACGGTATAAAATCCGTTTTCTGCTTTAGCTTGTGGCCGAAGCCACACCGTTGGTGCAGCAGACTCGGTTTGATAAAAAACTCATAAGAAAAGCAATTGAACTTGCACTGGACGACTTCAAGAATAAATATGCGGGATTTCTTCTCAGTGCCGATACTCTCAAGGTAGATCTATATTTCACGAATACTTTACACTTCTTTTCGCATGTGTACTTGTTTGCAGCAATTAAGTTGAACATTAAAAAGAGCAATCCACGTCATTTTAGGTGTTCATGATCAAGTCCTTGCATGTTTTCATAAAGACTGTCCAGTAGGATTCTCGTAAGAATTAAGTGCAGCTTCCTAAACTTGCTTTCATGTATATCTTCAGATCAGTATGTTTGCCCCTGATCTTGCTAAAGCGATTGCTGGCCTAATTTCATACTCCAATGACATGGATTTCAAAAAAGAATGCCTTGCAATTCTTGGCTTGCAGCCTCACCAATCAGAAGGGGAAATAGTTGAAGAAACTATAAAGAATAAGATAATTTCAGCAATAGAGGTGAATGATCAAAGGCCACAAGGTATTAAAGAAGTCGCCCCTCTTCTGTTTGAAGATGGTCGCCGCAAATTACAGTTTGTGAATGATGAATGTTACAAAGGTGGTTTTGATCCAATGGATTTGTAAGTATAATCTTCGTATTGAATAAAAGTGAAA

mRNA sequence

ATGGAATTTGCTTCTCTTCAAGATCTCTACCTACATCTAATTTCTTCGGCAATGCGGAGGTGCATCTGTTCCGAACGACTTTGCAGGCTCTCAGTTCTTCTGCAACGCTCTCCCGCTTCCGATCCTCCACTTGTTTGTATTTCCATTTCAGATACCGGCCTTGGAAGCTGCATACAGGAGTTTCAGGATTTGAAGTGCCCCGTTGAAGGTATCCTTGCCGAAACGTGGGACGGAGTTGTTTATGTGAGAACTACCAATATTTTTGATACCAAGATAAGTTGCTATCAGTTGAATCTGAAAGAGAATGTCAGTACCAGGAAGCCAATTTGGCTACCTTCAAACATTAAGCATGGTGTGAAATTCAGATTGGATTCAACCAACTACGTTCTCTGGAAGTATCAAGTTTCCTCAATTTTGAAAGCTCATTCTCTATTTGGGCATATTGACGAATCTCTTCCTCGACCCTCCAAATTCATTTGTTCATCAACTGGGATCAATACCACAGAGGTTAGTTCTGAATATCTTCAATGGATTTCCATAGATCAAGCTCTCATTGCCTTAATCAATGCAACCTTATCATCATCTGGTCTTGCCCATGTTGTTGGCTCTGAATCTTCAAAGGATCTCTGTTTTTCTTTGGAAAAACGCTCTAAAGGAATTCATAAGCTTTTTGAATGTCACAAGAATATTGCAATGGAAGTTGTGGCCGACGGCCAGGATATCCCAGGGTCACGTAATGATGCTGTTTTCCTGGAAAACTTGCCCGCTAGTTCTTCTTTCACAGCCTCAACCCTTGATTATTTGAAATTGGGCCTTGAGGATTATGTATTAAAGCATGGATCTAGTCTGATAGGCGACTCTTGTTTCCCTAACAGGGATGATCTGAGGAGTGGGAGTGGAATGGTTTGTGAAGACAAGCATAAAACTACCAAACTGGTAGTGGAGGCAGCGGTTGTGATTAGTGAAATATCAAATTCGGCTAATAATTGCTTTGGAGCAAGATGCTCTGATACAGAGGTTCTCTGTTTTAAAGATTTTGCCCCTTGTTCGATCTCTGAGGGATTTCTAAAGGCATTAACAGACATTGACTGGAAGCGTTATGGCTTGACTTTGGAATGTGCCATCGATCAAAGAAGCCATGCACTATTAAAGTGGGGACCCACGCCCTTATCTTTTCATATTCATATTGCTGTTCACTGCCATCACAAGCTTGTGGCCGAAGCCACACCGTTGGTGCAGCAGACTCGGTTTGATAAAAAACTCATAAGAAAAGCAATTGAACTTGCACTGGACGACTTCAAGAATAAATATGCGGGATTTCTTCTCAGTGCCGATACTCTCAAGATCAGTATGTTTGCCCCTGATCTTGCTAAAGCGATTGCTGGCCTAATTTCATACTCCAATGACATGGATTTCAAAAAAGAATGCCTTGCAATTCTTGGCTTGCAGCCTCACCAATCAGAAGGGGAAATAGTTGAAGAAACTATAAAGAATAAGATAATTTCAGCAATAGAGGTGAATGATCAAAGGCCACAAGGTATTAAAGAAGTCGCCCCTCTTCTGTTTGAAGATGGTCGCCGCAAATTACAGTTTGTGAATGATGAATGTTACAAAGGTGGTTTTGATCCAATGGATTTGTAAGTATAATCTTCGTATTGAATAAAAGTGAAA

Coding sequence (CDS)

ATGGAATTTGCTTCTCTTCAAGATCTCTACCTACATCTAATTTCTTCGGCAATGCGGAGGTGCATCTGTTCCGAACGACTTTGCAGGCTCTCAGTTCTTCTGCAACGCTCTCCCGCTTCCGATCCTCCACTTGTTTGTATTTCCATTTCAGATACCGGCCTTGGAAGCTGCATACAGGAGTTTCAGGATTTGAAGTGCCCCGTTGAAGGTATCCTTGCCGAAACGTGGGACGGAGTTGTTTATGTGAGAACTACCAATATTTTTGATACCAAGATAAGTTGCTATCAGTTGAATCTGAAAGAGAATGTCAGTACCAGGAAGCCAATTTGGCTACCTTCAAACATTAAGCATGGTGTGAAATTCAGATTGGATTCAACCAACTACGTTCTCTGGAAGTATCAAGTTTCCTCAATTTTGAAAGCTCATTCTCTATTTGGGCATATTGACGAATCTCTTCCTCGACCCTCCAAATTCATTTGTTCATCAACTGGGATCAATACCACAGAGGTTAGTTCTGAATATCTTCAATGGATTTCCATAGATCAAGCTCTCATTGCCTTAATCAATGCAACCTTATCATCATCTGGTCTTGCCCATGTTGTTGGCTCTGAATCTTCAAAGGATCTCTGTTTTTCTTTGGAAAAACGCTCTAAAGGAATTCATAAGCTTTTTGAATGTCACAAGAATATTGCAATGGAAGTTGTGGCCGACGGCCAGGATATCCCAGGGTCACGTAATGATGCTGTTTTCCTGGAAAACTTGCCCGCTAGTTCTTCTTTCACAGCCTCAACCCTTGATTATTTGAAATTGGGCCTTGAGGATTATGTATTAAAGCATGGATCTAGTCTGATAGGCGACTCTTGTTTCCCTAACAGGGATGATCTGAGGAGTGGGAGTGGAATGGTTTGTGAAGACAAGCATAAAACTACCAAACTGGTAGTGGAGGCAGCGGTTGTGATTAGTGAAATATCAAATTCGGCTAATAATTGCTTTGGAGCAAGATGCTCTGATACAGAGGTTCTCTGTTTTAAAGATTTTGCCCCTTGTTCGATCTCTGAGGGATTTCTAAAGGCATTAACAGACATTGACTGGAAGCGTTATGGCTTGACTTTGGAATGTGCCATCGATCAAAGAAGCCATGCACTATTAAAGTGGGGACCCACGCCCTTATCTTTTCATATTCATATTGCTGTTCACTGCCATCACAAGCTTGTGGCCGAAGCCACACCGTTGGTGCAGCAGACTCGGTTTGATAAAAAACTCATAAGAAAAGCAATTGAACTTGCACTGGACGACTTCAAGAATAAATATGCGGGATTTCTTCTCAGTGCCGATACTCTCAAGATCAGTATGTTTGCCCCTGATCTTGCTAAAGCGATTGCTGGCCTAATTTCATACTCCAATGACATGGATTTCAAAAAAGAATGCCTTGCAATTCTTGGCTTGCAGCCTCACCAATCAGAAGGGGAAATAGTTGAAGAAACTATAAAGAATAAGATAATTTCAGCAATAGAGGTGAATGATCAAAGGCCACAAGGTATTAAAGAAGTCGCCCCTCTTCTGTTTGAAGATGGTCGCCGCAAATTACAGTTTGTGAATGATGAATGTTACAAAGGTGGTTTTGATCCAATGGATTTGTAA

Protein sequence

MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQEFQDLKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVKFRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISIDQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECHKNIAMEVVADGQDIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRSGSGMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKALTDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDKKLIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

Homology

[Close]

BLAST of CmUC08G159840 vs. NCBI nr
Match: XP_038885431.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X2 [Benincasa hispida])

HSP 1 Score: 747.7 bits (1929), Expect = 7.3e-212
Identity = 389/547 (71.12%), Postives = 423/547 (77.33%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQ+LYLHLISSA+RRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE
Sbjct: 1   MEFASLQELYLHLISSAIRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVK 120
           FQDLKCPVEGILAETWDG+VYV+TT+I DT+ISCYQLNLKENV+TRKPIWLPSNIKHGVK
Sbjct: 61  FQDLKCPVEGILAETWDGIVYVKTTDILDTEISCYQLNLKENVTTRKPIWLPSNIKHGVK 120

Query: 121 FRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISI 180
           F                                            + TEV     + + +
Sbjct: 121 F--------------------------------------------SGTEVCLSVSESVDV 180

Query: 181 DQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECH-KNIAMEVVADGQ 240
              L+A IN                    CF         H++   +  NIAMEVVADGQ
Sbjct: 181 ---LLAEIN--------------------CF--------FHQILILNIPNIAMEVVADGQ 240

Query: 241 DIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRSGS 300
           DIPGSRNDAVFLENL +SSSFTASTLD+LKLGLEDYVL+HGSS   DSCFPNRDDLRSG 
Sbjct: 241 DIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVLRHGSSSTCDSCFPNRDDLRSGG 300

Query: 301 GMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKAL 360
           GMVCE+KHK TKLVVEAAVVISEISN  NNCFG  CSDT+VLCFKDF PCSI+E FLKAL
Sbjct: 301 GMVCEEKHKITKLVVEAAVVISEISNPTNNCFGGGCSDTKVLCFKDFVPCSITEAFLKAL 360

Query: 361 TDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDK 420
           T IDWKRYGLTLECAI+Q SHALLKWG  P SFHIHI VHC+HK+VAEATP+VQQTR+DK
Sbjct: 361 TGIDWKRYGLTLECAINQSSHALLKWGDMPFSFHIHIVVHCYHKIVAEATPMVQQTRYDK 420

Query: 421 KLIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAI 480
           KLIRKA++LALDDFKNKY GFLLSADTLKIS FAPDLAKA+AGL+ YSNDMDFK ECL+I
Sbjct: 421 KLIRKAVQLALDDFKNKYTGFLLSADTLKISKFAPDLAKAVAGLVLYSNDMDFKNECLSI 468

Query: 481 LGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKG 540
           LGLQ HQSEG IVEETIK  IISAIE ND+RPQ +KEVAPLLFEDGR    FV+DECYK 
Sbjct: 481 LGLQTHQSEGGIVEETIKKMIISAIEGNDRRPQRLKEVAPLLFEDGR----FVDDECYKN 468

Query: 541 GFDPMDL 547
           GFDPMDL
Sbjct: 541 GFDPMDL 468

[Close]

BLAST of CmUC08G159840 vs. NCBI nr
Match: XP_038885432.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X3 [Benincasa hispida])

HSP 1 Score: 744.2 bits (1920), Expect = 8.0e-211
Identity = 389/549 (70.86%), Postives = 421/549 (76.68%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQ+LYLHLISSA+RRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE
Sbjct: 1   MEFASLQELYLHLISSAIRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRT---TNIFDTKISCYQLNLKENVSTRKPIWLPSNIKH 120
           FQDLKCPVEGILAETWDG+VYV+T   T+I DT+ISCYQLNLKENV+TRKPIWLPSNIKH
Sbjct: 61  FQDLKCPVEGILAETWDGIVYVKTTEITDILDTEISCYQLNLKENVTTRKPIWLPSNIKH 120

Query: 121 GVKFRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQW 180
           GVKF                                            + TEV     + 
Sbjct: 121 GVKF--------------------------------------------SGTEVCLSVSES 180

Query: 181 ISIDQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECHKNIAMEVVAD 240
           + +   L+A IN                    CF               H+NIAMEVVAD
Sbjct: 181 VDV---LLAEIN--------------------CF--------------FHQNIAMEVVAD 240

Query: 241 GQDIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRS 300
           GQDIPGSRNDAVFLENL +SSSFTASTLD+LKLGLEDYVL+HGSS   DSCFPNRDDLRS
Sbjct: 241 GQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVLRHGSSSTCDSCFPNRDDLRS 300

Query: 301 GSGMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLK 360
           G GMVCE+KHK TKLVVEAAVVISEISN  NNCFG  CSDT+VLCFKDF PCSI+E FLK
Sbjct: 301 GGGMVCEEKHKITKLVVEAAVVISEISNPTNNCFGGGCSDTKVLCFKDFVPCSITEAFLK 360

Query: 361 ALTDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRF 420
           ALT IDWKRYGLTLECAI+Q SHALLKWG  P SFHIHI VHC+HK+VAEATP+VQQTR+
Sbjct: 361 ALTGIDWKRYGLTLECAINQSSHALLKWGDMPFSFHIHIVVHCYHKIVAEATPMVQQTRY 420

Query: 421 DKKLIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECL 480
           DKKLIRKA++LALDDFKNKY GFLLSADTLKIS FAPDLAKA+AGL+ YSNDMDFK ECL
Sbjct: 421 DKKLIRKAVQLALDDFKNKYTGFLLSADTLKISKFAPDLAKAVAGLVLYSNDMDFKNECL 464

Query: 481 AILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECY 540
           +ILGLQ HQSEG IVEETIK  IISAIE ND+RPQ +KEVAPLLFEDGR    FV+DECY
Sbjct: 481 SILGLQTHQSEGGIVEETIKKMIISAIEGNDRRPQRLKEVAPLLFEDGR----FVDDECY 464

Query: 541 KGGFDPMDL 547
           K GFDPMDL
Sbjct: 541 KNGFDPMDL 464

[Close]

BLAST of CmUC08G159840 vs. NCBI nr
Match: XP_038885430.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Benincasa hispida])

HSP 1 Score: 742.3 bits (1915), Expect = 3.1e-210
Identity = 389/550 (70.73%), Postives = 423/550 (76.91%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQ+LYLHLISSA+RRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE
Sbjct: 1   MEFASLQELYLHLISSAIRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRT---TNIFDTKISCYQLNLKENVSTRKPIWLPSNIKH 120
           FQDLKCPVEGILAETWDG+VYV+T   T+I DT+ISCYQLNLKENV+TRKPIWLPSNIKH
Sbjct: 61  FQDLKCPVEGILAETWDGIVYVKTTEITDILDTEISCYQLNLKENVTTRKPIWLPSNIKH 120

Query: 121 GVKFRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQW 180
           GVKF                                            + TEV     + 
Sbjct: 121 GVKF--------------------------------------------SGTEVCLSVSES 180

Query: 181 ISIDQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECH-KNIAMEVVA 240
           + +   L+A IN                    CF         H++   +  NIAMEVVA
Sbjct: 181 VDV---LLAEIN--------------------CF--------FHQILILNIPNIAMEVVA 240

Query: 241 DGQDIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLR 300
           DGQDIPGSRNDAVFLENL +SSSFTASTLD+LKLGLEDYVL+HGSS   DSCFPNRDDLR
Sbjct: 241 DGQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVLRHGSSSTCDSCFPNRDDLR 300

Query: 301 SGSGMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFL 360
           SG GMVCE+KHK TKLVVEAAVVISEISN  NNCFG  CSDT+VLCFKDF PCSI+E FL
Sbjct: 301 SGGGMVCEEKHKITKLVVEAAVVISEISNPTNNCFGGGCSDTKVLCFKDFVPCSITEAFL 360

Query: 361 KALTDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTR 420
           KALT IDWKRYGLTLECAI+Q SHALLKWG  P SFHIHI VHC+HK+VAEATP+VQQTR
Sbjct: 361 KALTGIDWKRYGLTLECAINQSSHALLKWGDMPFSFHIHIVVHCYHKIVAEATPMVQQTR 420

Query: 421 FDKKLIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKEC 480
           +DKKLIRKA++LALDDFKNKY GFLLSADTLKIS FAPDLAKA+AGL+ YSNDMDFK EC
Sbjct: 421 YDKKLIRKAVQLALDDFKNKYTGFLLSADTLKISKFAPDLAKAVAGLVLYSNDMDFKNEC 471

Query: 481 LAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDEC 540
           L+ILGLQ HQSEG IVEETIK  IISAIE ND+RPQ +KEVAPLLFEDGR    FV+DEC
Sbjct: 481 LSILGLQTHQSEGGIVEETIKKMIISAIEGNDRRPQRLKEVAPLLFEDGR----FVDDEC 471

Query: 541 YKGGFDPMDL 547
           YK GFDPMDL
Sbjct: 541 YKNGFDPMDL 471

[Close]

BLAST of CmUC08G159840 vs. NCBI nr
Match: XP_023545219.1 (type 2 DNA topoisomerase 6 subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 706.8 bits (1823), Expect = 1.4e-199
Identity = 377/547 (68.92%), Postives = 415/547 (75.87%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQDL L LISSA+RRCICSERLCRLSVLLQRSPASDPPLV ISISDTGLGSCI+E
Sbjct: 1   MEFASLQDLCLLLISSAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVK 120
           FQ+LKCPVEGILAETW+G+VYVRTTNI D +ISCY+LNLKENV+TRKPI LPSNIKHGVK
Sbjct: 61  FQNLKCPVEGILAETWNGIVYVRTTNICDKEISCYELNLKENVTTRKPILLPSNIKHGVK 120

Query: 121 FRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISI 180
           F                                            + TEV       +S+
Sbjct: 121 F--------------------------------------------SGTEVC------LSV 180

Query: 181 DQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECH-KNIAMEVVADGQ 240
            +++  L                         LE+ +    K+      NIAMEV+ADGQ
Sbjct: 181 SESVDVL-------------------------LEEFNCFFQKILVLKVPNIAMEVMADGQ 240

Query: 241 DIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRSGS 300
           D+PGSRNDAVFLE +  SSSF ASTLD+LKLGLE YVL+HGSSL  DSCFPNRD+LRSG 
Sbjct: 241 DVPGSRNDAVFLEKISTSSSFAASTLDHLKLGLESYVLRHGSSLACDSCFPNRDNLRSGG 300

Query: 301 GMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKAL 360
           GMVCEDKHKTTKLVVEAAVV SEISN  NNCFGA CSDT+VLCFKDFAPCSISE  LKAL
Sbjct: 301 GMVCEDKHKTTKLVVEAAVVTSEISNPTNNCFGAGCSDTKVLCFKDFAPCSISEALLKAL 360

Query: 361 TDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDK 420
           T IDWKRYGL LECAIDQRSHALLKW   PLSFHIHI VHC+ KLV EA PL+Q+TRFDK
Sbjct: 361 TGIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKLVFEAMPLLQKTRFDK 420

Query: 421 KLIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAI 480
           KLIRKA++LALDDFKNK+AG LLSADTLKIS FAPDLAK+IAGL+ YS+DMDFK+ECLAI
Sbjct: 421 KLIRKAVKLALDDFKNKHAGVLLSADTLKISKFAPDLAKSIAGLVLYSSDMDFKEECLAI 471

Query: 481 LGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKG 540
           LGLQPHQSEGEIV E IK KIISAIEVND+R QG KEVAPLLFE GR +LQFV+DEC + 
Sbjct: 481 LGLQPHQSEGEIVGENIKKKIISAIEVNDRRQQGTKEVAPLLFE-GRHELQFVDDECDED 471

Query: 541 GFDPMDL 547
           GFDPMDL
Sbjct: 541 GFDPMDL 471

[Close]

BLAST of CmUC08G159840 vs. NCBI nr
Match: XP_016900028.1 (PREDICTED: type 2 DNA topoisomerase 6 subunit B-like isoform X4 [Cucumis melo])

HSP 1 Score: 706.8 bits (1823), Expect = 1.4e-199
Identity = 377/547 (68.92%), Postives = 409/547 (74.77%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQDLYLHLISSA+RRCICSERLCRLSVLLQRSPASDPPLV ISISDTG GSCIQE
Sbjct: 1   MEFASLQDLYLHLISSAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGHGSCIQE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVK 120
           FQDLKCPVEGILAETWDG+VYVRTTNI DT+ISCYQLNLKENV+TRKP+WLPSNIKH VK
Sbjct: 61  FQDLKCPVEGILAETWDGIVYVRTTNISDTEISCYQLNLKENVATRKPMWLPSNIKHDVK 120

Query: 121 FRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISI 180
           F                                            + TEV     + + +
Sbjct: 121 F--------------------------------------------SGTEVCLSVSESVDV 180

Query: 181 DQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECH-KNIAMEVVADGQ 240
              L+A IN                    CF         H++      NIAMEVVADGQ
Sbjct: 181 ---LLAEIN--------------------CF--------FHQILILKVPNIAMEVVADGQ 240

Query: 241 DIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRSGS 300
           D  GSRNDAVFLENL + SSFTASTLD LKLG EDYVL HGSS   +SCFPNRD+L+SG 
Sbjct: 241 DTSGSRNDAVFLENLFSGSSFTASTLDRLKLGFEDYVLGHGSSSTCNSCFPNRDELKSGG 300

Query: 301 GMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKAL 360
           GMVCEDKHK TKLVVEAAVVISEISN   NCFGA CSDT+VL FKDF PC+ISE FLKAL
Sbjct: 301 GMVCEDKHKLTKLVVEAAVVISEISNPTKNCFGAGCSDTKVLFFKDFVPCTISEAFLKAL 360

Query: 361 TDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDK 420
           T IDWKR+GLTLECAI+QR HALLKW  TPLSFHIHI VH + KLVA ATPLVQQTR DK
Sbjct: 361 TGIDWKRHGLTLECAINQRRHALLKWEKTPLSFHIHIVVHYYQKLVANATPLVQQTRLDK 420

Query: 421 KLIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAI 480
           KLI KA++LAL+DFKNK+AGFLLS D LKIS FAPDLAKAIAGL+ YSNDMDFK+ECLAI
Sbjct: 421 KLISKAVQLALEDFKNKHAGFLLSVDNLKISRFAPDLAKAIAGLVLYSNDMDFKRECLAI 472

Query: 481 LGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKG 540
           LGLQPHQSEGE+VEETIK KIIS IE NDQRPQGIKEVA LLF  GR+KLQ +++ECY  
Sbjct: 481 LGLQPHQSEGEVVEETIKKKIISVIEKNDQRPQGIKEVACLLFRAGRQKLQDLDNECYMD 472

Query: 541 GFDPMDL 547
            FDPMDL
Sbjct: 541 DFDPMDL 472

[Close]

BLAST of CmUC08G159840 vs. ExPASy Swiss-Prot
Match: Q5Q0E6 (Type 2 DNA topoisomerase 6 subunit B-like OS=Arabidopsis thaliana OX=3702 GN=MTOPVIB PE=1 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 6.6e-83
Identity = 194/541 (35.86%), Postives = 279/541 (51.57%), Query Frame = 0


Query: 4   ASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQEFQD 63
           A +  L L LISSA +RC  +E LCRLSVLL +S   DPP+ CISI+DTG+G  ++EFQ+
Sbjct: 5   APVPKLLLQLISSAFQRCRLAEDLCRLSVLLDQSTERDPPITCISIADTGIGCNLEEFQN 64

Query: 64  LKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVKFRL 123
           L+CP E   A+ WDG++ V+TT   D ++  Y +NL E ++ ++    PS  K+G KF  
Sbjct: 65  LRCPREFNGAKIWDGLLSVKTTCFTDDEVYYYHINLDEYIANKRLKRQPSQAKNGAKF-- 124

Query: 124 DSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISIDQA 183
                       S    + S+FG +D         +    G         + Q I + Q 
Sbjct: 125 ------------SGTEVSLSVFGSMD-------VLVAPIIG---------FFQKIIVLQI 184

Query: 184 LIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECHKNIAMEVVADGQDIPG 243
           L                                            N+ ++++      PG
Sbjct: 185 L--------------------------------------------NVTLDLMVKQGTSPG 244

Query: 244 SRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSL--IGDSCFPNRDDLRSGSGM 303
           ++   VF  N   +  FTAS L+ LK GLEDYVL+H + L  + D CF +R+ L+ GSG 
Sbjct: 245 NQTQYVFAVNADKTPCFTASNLERLKSGLEDYVLRHANCLDTMCDYCFSDREHLKVGSGT 304

Query: 304 VC-EDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKALT 363
           VC EDKHK     +E  +VIS++  S  +C  +    TEVL F +F P  +    L AL 
Sbjct: 305 VCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLYFDNFLPSPVPHLALSALK 364

Query: 364 DIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDKK 423
            IDWK+YGL L    DQ  H  L+W   P    I IA+H +H       P  Q+      
Sbjct: 365 KIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQKNGPGIS 424

Query: 424 LIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAIL 483
           L++K I+ ALD+ K K+ GFLLS+ + KI  + PDLA++IAGLI  S D+DF+ +CL++L
Sbjct: 425 LLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQGDCLSVL 467

Query: 484 GLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGG 542
           G Q  + E + VE  I+ KI++ I +N+++PQ  +E AP LF DG  +  F  DE  +G 
Sbjct: 485 GFQTQEVERDTVENYIQRKIVTVIGMNERKPQKDQEAAPFLFFDGESETSFFEDEEVEGE 467

[Close]

BLAST of CmUC08G159840 vs. ExPASy TrEMBL
Match: A0A1S4DVN5 (type 2 DNA topoisomerase 6 subunit B-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103487691 PE=4 SV=1)

HSP 1 Score: 706.8 bits (1823), Expect = 6.9e-200
Identity = 377/547 (68.92%), Postives = 409/547 (74.77%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQDLYLHLISSA+RRCICSERLCRLSVLLQRSPASDPPLV ISISDTG GSCIQE
Sbjct: 1   MEFASLQDLYLHLISSAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGHGSCIQE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVK 120
           FQDLKCPVEGILAETWDG+VYVRTTNI DT+ISCYQLNLKENV+TRKP+WLPSNIKH VK
Sbjct: 61  FQDLKCPVEGILAETWDGIVYVRTTNISDTEISCYQLNLKENVATRKPMWLPSNIKHDVK 120

Query: 121 FRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISI 180
           F                                            + TEV     + + +
Sbjct: 121 F--------------------------------------------SGTEVCLSVSESVDV 180

Query: 181 DQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECH-KNIAMEVVADGQ 240
              L+A IN                    CF         H++      NIAMEVVADGQ
Sbjct: 181 ---LLAEIN--------------------CF--------FHQILILKVPNIAMEVVADGQ 240

Query: 241 DIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRSGS 300
           D  GSRNDAVFLENL + SSFTASTLD LKLG EDYVL HGSS   +SCFPNRD+L+SG 
Sbjct: 241 DTSGSRNDAVFLENLFSGSSFTASTLDRLKLGFEDYVLGHGSSSTCNSCFPNRDELKSGG 300

Query: 301 GMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKAL 360
           GMVCEDKHK TKLVVEAAVVISEISN   NCFGA CSDT+VL FKDF PC+ISE FLKAL
Sbjct: 301 GMVCEDKHKLTKLVVEAAVVISEISNPTKNCFGAGCSDTKVLFFKDFVPCTISEAFLKAL 360

Query: 361 TDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDK 420
           T IDWKR+GLTLECAI+QR HALLKW  TPLSFHIHI VH + KLVA ATPLVQQTR DK
Sbjct: 361 TGIDWKRHGLTLECAINQRRHALLKWEKTPLSFHIHIVVHYYQKLVANATPLVQQTRLDK 420

Query: 421 KLIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAI 480
           KLI KA++LAL+DFKNK+AGFLLS D LKIS FAPDLAKAIAGL+ YSNDMDFK+ECLAI
Sbjct: 421 KLISKAVQLALEDFKNKHAGFLLSVDNLKISRFAPDLAKAIAGLVLYSNDMDFKRECLAI 472

Query: 481 LGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKG 540
           LGLQPHQSEGE+VEETIK KIIS IE NDQRPQGIKEVA LLF  GR+KLQ +++ECY  
Sbjct: 481 LGLQPHQSEGEVVEETIKKKIISVIEKNDQRPQGIKEVACLLFRAGRQKLQDLDNECYMD 472

Query: 541 GFDPMDL 547
            FDPMDL
Sbjct: 541 DFDPMDL 472

[Close]

BLAST of CmUC08G159840 vs. ExPASy TrEMBL
Match: A0A0A0LMM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348270 PE=4 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 1.1e-197
Identity = 376/548 (68.61%), Postives = 409/548 (74.64%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQDLYLHLISSA+RRCICSERLCRLSVLLQRSPASDPPLV ISISDTG G+CIQE
Sbjct: 1   MEFASLQDLYLHLISSAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGHGNCIQE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVK 120
           FQDLKCPVEGILAETWDG+VYVRTTNI D +ISCYQLNLKENV+TRKPI LPSNIKH VK
Sbjct: 61  FQDLKCPVEGILAETWDGIVYVRTTNISDPEISCYQLNLKENVTTRKPIRLPSNIKHAVK 120

Query: 121 FRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISI 180
           F    T   L                           F+  S  +   E++  +      
Sbjct: 121 F--SGTEVCL---------------------------FVSESVDVLLAEINCLF------ 180

Query: 181 DQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECHKNIAMEVVADGQD 240
            Q LI  +                                        NIAMEVVADGQD
Sbjct: 181 HQILILKV---------------------------------------PNIAMEVVADGQD 240

Query: 241 IPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRSGSG 300
             GS NDAVFLENL + SSFTASTLD LKLGLED+VL+HGSS + +SCFPNRD+L+SG G
Sbjct: 241 TSGSLNDAVFLENLFSGSSFTASTLDLLKLGLEDFVLRHGSSSMCNSCFPNRDELKSGGG 300

Query: 301 MVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKALT 360
           MVCEDKHK TKLVVEAAVVI EISN  NNCFGA CSDT+VLCFKDFAPCSISE FLKALT
Sbjct: 301 MVCEDKHKITKLVVEAAVVIGEISNLTNNCFGAGCSDTKVLCFKDFAPCSISEAFLKALT 360

Query: 361 DIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDKK 420
            IDWKR+GLTLECAI+QR HALLKW  TPLSFHIHI VH +HKLVA ATP+VQQTRFDKK
Sbjct: 361 FIDWKRHGLTLECAINQRRHALLKWEQTPLSFHIHIVVHYYHKLVANATPVVQQTRFDKK 420

Query: 421 LIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAIL 480
           LI KA++LAL+DFKNK+AGFLLS D LKIS FAPDLAKA+AGL+ YSNDMDFKKECLAIL
Sbjct: 421 LISKAVQLALEDFKNKHAGFLLSVDNLKISRFAPDLAKAMAGLVLYSNDMDFKKECLAIL 474

Query: 481 GLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFV-NDECY-K 540
           GLQPHQS GE+VEETIK KIIS IE NDQRPQGIKEVA LLF+DGR+KLQ V ND  Y  
Sbjct: 481 GLQPHQSGGEVVEETIKKKIISVIEKNDQRPQGIKEVAHLLFKDGRQKLQVVDNDNEYCM 474

Query: 541 GGFDPMDL 547
             FDPM+L
Sbjct: 541 DDFDPMNL 474

[Close]

BLAST of CmUC08G159840 vs. ExPASy TrEMBL
Match: A0A6J1HCF2 (type 2 DNA topoisomerase 6 subunit B-like isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111462807 PE=4 SV=1)

HSP 1 Score: 699.1 bits (1803), Expect = 1.4e-197
Identity = 373/547 (68.19%), Postives = 412/547 (75.32%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQDL L LIS A+RRCICSERLCRLSVLLQRSPASDPPLV ISISDTGLGSCI+E
Sbjct: 1   MEFASLQDLCLLLISLAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVK 120
           FQ+LKCPVEGILAETW+G+VYVRTTNI D +ISCY+LNLKENV+TRKPI LPSNIKHGVK
Sbjct: 61  FQNLKCPVEGILAETWNGIVYVRTTNICDKEISCYELNLKENVTTRKPILLPSNIKHGVK 120

Query: 121 FRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISI 180
           F                                            + TEV       +S+
Sbjct: 121 F--------------------------------------------SGTEVC------LSV 180

Query: 181 DQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECH-KNIAMEVVADGQ 240
            +++  L                         LE+ +    K+      NIAMEV+ADGQ
Sbjct: 181 SESVDVL-------------------------LEEFNCFFQKILVLKVPNIAMEVMADGQ 240

Query: 241 DIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRSGS 300
           D+PGSRNDAVFLE    SSSF ASTLD+LKLGLE YVL+HGSSL  DSCFPNRD+LRSG 
Sbjct: 241 DVPGSRNDAVFLEKFSPSSSFAASTLDHLKLGLESYVLRHGSSLACDSCFPNRDNLRSGG 300

Query: 301 GMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKAL 360
           GMVCEDKHKTTKLVVEAAVV SEI N  NNCFGA CSDT+VLCFKDFAPCSISE  LKAL
Sbjct: 301 GMVCEDKHKTTKLVVEAAVVTSEIPNPTNNCFGAGCSDTKVLCFKDFAPCSISEALLKAL 360

Query: 361 TDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDK 420
           T IDWKRYGL LECAIDQRSHALLKW   PLSFHIHI VHC+ KLV EA PL+Q+TRFDK
Sbjct: 361 TGIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKLVFEAMPLLQKTRFDK 420

Query: 421 KLIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAI 480
           KLIRKA++LALDDFKNK+AG LLSADTLKIS FAPDLAK+IAGL+ YS+DMDFK+ECLAI
Sbjct: 421 KLIRKAVKLALDDFKNKHAGVLLSADTLKISKFAPDLAKSIAGLVLYSSDMDFKEECLAI 471

Query: 481 LGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKG 540
           LGLQPHQSEGEIV E IK KIISAIEVND+R QG +EVAPLLFE GR +LQ+V+DEC + 
Sbjct: 481 LGLQPHQSEGEIVGENIKKKIISAIEVNDRRQQGTREVAPLLFE-GRHELQYVDDECDED 471

Query: 541 GFDPMDL 547
           GFDPMDL
Sbjct: 541 GFDPMDL 471

[Close]

BLAST of CmUC08G159840 vs. ExPASy TrEMBL
Match: A0A6J1K810 (type 2 DNA topoisomerase 6 subunit B-like isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111491995 PE=4 SV=1)

HSP 1 Score: 696.8 bits (1797), Expect = 7.1e-197
Identity = 373/547 (68.19%), Postives = 411/547 (75.14%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQDL L LISSA+RRCICSERLCRLSVLLQRSPASDPPLV ISISDTGLGSCI+E
Sbjct: 1   MEFASLQDLCLLLISSAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVK 120
           FQ+LKCPVEGILAETW+G+VYVRTTNI D +ISCYQLNLKENV+TRKPI LPSNIKHGVK
Sbjct: 61  FQNLKCPVEGILAETWNGIVYVRTTNICDKEISCYQLNLKENVTTRKPILLPSNIKHGVK 120

Query: 121 FRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISI 180
           F                                            + TEV       +S+
Sbjct: 121 F--------------------------------------------SGTEVC------LSV 180

Query: 181 DQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECH-KNIAMEVVADGQ 240
            +++  L                         LE+ +    K+      NIAMEV+ADGQ
Sbjct: 181 SESIDVL-------------------------LEEFNCFFQKILVLKVPNIAMEVMADGQ 240

Query: 241 DIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRSGS 300
           D+PGSRNDAVFLE    SSSF ASTLD+LK GLE YVL+HGSSL  DSCFPNRD+LRSG 
Sbjct: 241 DVPGSRNDAVFLEKFSPSSSFAASTLDHLKFGLESYVLRHGSSLACDSCFPNRDNLRSGG 300

Query: 301 GMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKAL 360
           GMVCEDKHKTTKLVVEAAVV +EISN  NNCF A CS+T+VLCFKDFAPCSISE  LKAL
Sbjct: 301 GMVCEDKHKTTKLVVEAAVVTTEISNPTNNCFRAGCSNTKVLCFKDFAPCSISEALLKAL 360

Query: 361 TDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDK 420
           T IDWKRYGL LECAIDQRSHALLKW   PLSFHIHI VHC+ K V EA PL+Q+TRFDK
Sbjct: 361 TGIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKHVFEAMPLLQKTRFDK 420

Query: 421 KLIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAI 480
           KLIRKA++LALDDFKNK+AG LLSADTLKIS FAPDLAK+IAGL+ YS+DMDFK+ECLAI
Sbjct: 421 KLIRKAVKLALDDFKNKHAGVLLSADTLKISKFAPDLAKSIAGLVLYSSDMDFKEECLAI 471

Query: 481 LGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKG 540
           LGLQPHQSEGEIV E IKNKIISAIEVND+R QG KEVAPLLFE GR +LQFV+DEC + 
Sbjct: 481 LGLQPHQSEGEIVGENIKNKIISAIEVNDRRQQGTKEVAPLLFE-GRHELQFVDDECDED 471

Query: 541 GFDPMDL 547
           G DPMDL
Sbjct: 541 GLDPMDL 471

[Close]

BLAST of CmUC08G159840 vs. ExPASy TrEMBL
Match: A0A6J1HCE6 (type 2 DNA topoisomerase 6 subunit B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462807 PE=4 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 9.6e-194
Identity = 373/569 (65.55%), Postives = 412/569 (72.41%), Query Frame = 0


Query: 1   MEFASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQE 60
           MEFASLQDL L LIS A+RRCICSERLCRLSVLLQRSPASDPPLV ISISDTGLGSCI+E
Sbjct: 1   MEFASLQDLCLLLISLAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEE 60

Query: 61  FQDLKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVK 120
           FQ+LKCPVEGILAETW+G+VYVRTTNI D +ISCY+LNLKENV+TRKPI LPSNIKHGVK
Sbjct: 61  FQNLKCPVEGILAETWNGIVYVRTTNICDKEISCYELNLKENVTTRKPILLPSNIKHGVK 120

Query: 121 FRLDSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISI 180
           F                                            + TEV       +S+
Sbjct: 121 F--------------------------------------------SGTEVC------LSV 180

Query: 181 DQALIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECH-KNIAMEVVADGQ 240
            +++  L                         LE+ +    K+      NIAMEV+ADGQ
Sbjct: 181 SESVDVL-------------------------LEEFNCFFQKILVLKVPNIAMEVMADGQ 240

Query: 241 DIPGSRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSLIGDSCFPNRDDLRSGS 300
           D+PGSRNDAVFLE    SSSF ASTLD+LKLGLE YVL+HGSSL  DSCFPNRD+LRSG 
Sbjct: 241 DVPGSRNDAVFLEKFSPSSSFAASTLDHLKLGLESYVLRHGSSLACDSCFPNRDNLRSGG 300

Query: 301 GMVCEDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKAL 360
           GMVCEDKHKTTKLVVEAAVV SEI N  NNCFGA CSDT+VLCFKDFAPCSISE  LKAL
Sbjct: 301 GMVCEDKHKTTKLVVEAAVVTSEIPNPTNNCFGAGCSDTKVLCFKDFAPCSISEALLKAL 360

Query: 361 TDIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDK 420
           T IDWKRYGL LECAIDQRSHALLKW   PLSFHIHI VHC+ KLV EA PL+Q+TRFDK
Sbjct: 361 TGIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKLVFEAMPLLQKTRFDK 420

Query: 421 KLIRKAIELALDDFKNKYAGFLLSADTLK----------------------ISMFAPDLA 480
           KLIRKA++LALDDFKNK+AG LLSADTLK                      IS FAPDLA
Sbjct: 421 KLIRKAVKLALDDFKNKHAGVLLSADTLKVLACSRRNQEQLPKLASIFHLQISKFAPDLA 480

Query: 481 KAIAGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEV 540
           K+IAGL+ YS+DMDFK+ECLAILGLQPHQSEGEIV E IK KIISAIEVND+R QG +EV
Sbjct: 481 KSIAGLVLYSSDMDFKEECLAILGLQPHQSEGEIVGENIKKKIISAIEVNDRRQQGTREV 493

Query: 541 APLLFEDGRRKLQFVNDECYKGGFDPMDL 547
           APLLFE GR +LQ+V+DEC + GFDPMDL
Sbjct: 541 APLLFE-GRHELQYVDDECDEDGFDPMDL 493

[Close]

BLAST of CmUC08G159840 vs. TAIR 10
Match: AT1G60460.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 309.7 bits (792), Expect = 4.7e-84
Identity = 194/541 (35.86%), Postives = 279/541 (51.57%), Query Frame = 0


Query: 4   ASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQEFQD 63
           A +  L L LISSA +RC  +E LCRLSVLL +S   DPP+ CISI+DTG+G  ++EFQ+
Sbjct: 5   APVPKLLLQLISSAFQRCRLAEDLCRLSVLLDQSTERDPPITCISIADTGIGCNLEEFQN 64

Query: 64  LKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVKFRL 123
           L+CP E   A+ WDG++ V+TT   D ++  Y +NL E ++ ++    PS  K+G KF  
Sbjct: 65  LRCPREFNGAKIWDGLLSVKTTCFTDDEVYYYHINLDEYIANKRLKRQPSQAKNGAKF-- 124

Query: 124 DSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISIDQA 183
                       S    + S+FG +D         +    G         + Q I + Q 
Sbjct: 125 ------------SGTEVSLSVFGSMD-------VLVAPIIG---------FFQKIIVLQI 184

Query: 184 LIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECHKNIAMEVVADGQDIPG 243
           L                                            N+ ++++      PG
Sbjct: 185 L--------------------------------------------NVTLDLMVKQGTSPG 244

Query: 244 SRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSL--IGDSCFPNRDDLRSGSGM 303
           ++   VF  N   +  FTAS L+ LK GLEDYVL+H + L  + D CF +R+ L+ GSG 
Sbjct: 245 NQTQYVFAVNADKTPCFTASNLERLKSGLEDYVLRHANCLDTMCDYCFSDREHLKVGSGT 304

Query: 304 VC-EDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKALT 363
           VC EDKHK     +E  +VIS++  S  +C  +    TEVL F +F P  +    L AL 
Sbjct: 305 VCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLYFDNFLPSPVPHLALSALK 364

Query: 364 DIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDKK 423
            IDWK+YGL L    DQ  H  L+W   P    I IA+H +H       P  Q+      
Sbjct: 365 KIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQKNGPGIS 424

Query: 424 LIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAIL 483
           L++K I+ ALD+ K K+ GFLLS+ + KI  + PDLA++IAGLI  S D+DF+ +CL++L
Sbjct: 425 LLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQGDCLSVL 467

Query: 484 GLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGG 542
           G Q  + E + VE  I+ KI++ I +N+++PQ  +E AP LF DG  +  F  DE  +G 
Sbjct: 485 GFQTQEVERDTVENYIQRKIVTVIGMNERKPQKDQEAAPFLFFDGESETSFFEDEEVEGE 467

[Close]

BLAST of CmUC08G159840 vs. TAIR 10
Match: AT1G60460.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 308.1 bits (788), Expect = 1.4e-83
Identity = 193/535 (36.07%), Postives = 276/535 (51.59%), Query Frame = 0


Query: 4   ASLQDLYLHLISSAMRRCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQEFQD 63
           A +  L L LISSA +RC  +E LCRLSVLL +S   DPP+ CISI+DTG+G  ++EFQ+
Sbjct: 5   APVPKLLLQLISSAFQRCRLAEDLCRLSVLLDQSTERDPPITCISIADTGIGCNLEEFQN 64

Query: 64  LKCPVEGILAETWDGVVYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVKFRL 123
           L+CP E   A+ WDG++ V+TT   D ++  Y +NL E ++ ++    PS  K+G KF  
Sbjct: 65  LRCPREFNGAKIWDGLLSVKTTCFTDDEVYYYHINLDEYIANKRLKRQPSQAKNGAKF-- 124

Query: 124 DSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISIDQA 183
                       S    + S+FG +D         +    G         + Q I + Q 
Sbjct: 125 ------------SGTEVSLSVFGSMD-------VLVAPIIG---------FFQKIIVLQI 184

Query: 184 LIALINATLSSSGLAHVVGSESSKDLCFSLEKRSKGIHKLFECHKNIAMEVVADGQDIPG 243
           L                                            N+ ++++      PG
Sbjct: 185 L--------------------------------------------NVTLDLMVKQGTSPG 244

Query: 244 SRNDAVFLENLPASSSFTASTLDYLKLGLEDYVLKHGSSL--IGDSCFPNRDDLRSGSGM 303
           ++   VF  N   +  FTAS L+ LK GLEDYVL+H + L  + D CF +R+ L+ GSG 
Sbjct: 245 NQTQYVFAVNADKTPCFTASNLERLKSGLEDYVLRHANCLDTMCDYCFSDREHLKVGSGT 304

Query: 304 VC-EDKHKTTKLVVEAAVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKALT 363
           VC EDKHK     +E  +VIS++  S  +C  +    TEVL F +F P  +    L AL 
Sbjct: 305 VCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLYFDNFLPSPVPHLALSALK 364

Query: 364 DIDWKRYGLTLECAIDQRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDKK 423
            IDWK+YGL L    DQ  H  L+W   P    I IA+H +H       P  Q+      
Sbjct: 365 KIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQKNGPGIS 424

Query: 424 LIRKAIELALDDFKNKYAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAIL 483
           L++K I+ ALD+ K K+ GFLLS+ + KI  + PDLA++IAGLI  S D+DF+ +CL++L
Sbjct: 425 LLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQGDCLSVL 461

Query: 484 GLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDE 536
           G Q  + E + VE  I+ KI++ I +N+++PQ  +E AP LF DG  +  F  DE
Sbjct: 485 GFQTQEVERDTVENYIQRKIVTVIGMNERKPQKDQEAAPFLFFDGESETSFFEDE 461

[Close]

BLAST of CmUC08G159840 vs. TAIR 10
Match: AT1G60460.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 297.7 bits (761), Expect = 1.9e-80
Identity = 185/525 (35.24%), Postives = 269/525 (51.24%), Query Frame = 0


Query: 20  RCICSERLCRLSVLLQRSPASDPPLVCISISDTGLGSCIQEFQDLKCPVEGILAETWDGV 79
           +C  +E LCRLSVLL +S   DPP+ CISI+DTG+G  ++EFQ+L+CP E   A+ WDG+
Sbjct: 10  KCRLAEDLCRLSVLLDQSTERDPPITCISIADTGIGCNLEEFQNLRCPREFNGAKIWDGL 69

Query: 80  VYVRTTNIFDTKISCYQLNLKENVSTRKPIWLPSNIKHGVKFRLDSTNYVLWKYQVSSIL 139
           + V+TT   D ++  Y +NL E ++ ++    PS  K+G KF              S   
Sbjct: 70  LSVKTTCFTDDEVYYYHINLDEYIANKRLKRQPSQAKNGAKF--------------SGTE 129

Query: 140 KAHSLFGHIDESLPRPSKFICSSTGINTTEVSSEYLQWISIDQALIALINATLSSSGLAH 199
            + S+FG +D         +    G         + Q I + Q L               
Sbjct: 130 VSLSVFGSMD-------VLVAPIIG---------FFQKIIVLQIL--------------- 189

Query: 200 VVGSESSKDLCFSLEKRSKGIHKLFECHKNIAMEVVADGQDIPGSRNDAVFLENLPASSS 259
                                        N+ ++++      PG++   VF  N   +  
Sbjct: 190 -----------------------------NVTLDLMVKQGTSPGNQTQYVFAVNADKTPC 249

Query: 260 FTASTLDYLKLGLEDYVLKHGSSL--IGDSCFPNRDDLRSGSGMVC-EDKHKTTKLVVEA 319
           FTAS L+ LK GLEDYVL+H + L  + D CF +R+ L+ GSG VC EDKHK     +E 
Sbjct: 250 FTASNLERLKSGLEDYVLRHANCLDTMCDYCFSDREHLKVGSGTVCQEDKHKRVGGTMEV 309

Query: 320 AVVISEISNSANNCFGARCSDTEVLCFKDFAPCSISEGFLKALTDIDWKRYGLTLECAID 379
            +VIS++  S  +C  +    TEVL F +F P  +    L AL  IDWK+YGL L    D
Sbjct: 310 VIVISDLLESTQHCSRSCNGKTEVLYFDNFLPSPVPHLALSALKKIDWKKYGLILANVND 369

Query: 380 QRSHALLKWGPTPLSFHIHIAVHCHHKLVAEATPLVQQTRFDKKLIRKAIELALDDFKNK 439
           Q  H  L+W   P    I IA+H +H       P  Q+      L++K I+ ALD+ K K
Sbjct: 370 QDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQKNGPGISLLKKGIKNALDNLKAK 429

Query: 440 YAGFLLSADTLKISMFAPDLAKAIAGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETI 499
           + GFLLS+ + KI  + PDLA++IAGLI  S D+DF+ +CL++LG Q  + E + VE  I
Sbjct: 430 HEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQGDCLSVLGFQTQEVERDTVENYI 456

Query: 500 KNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGF 542
           + KI++ I +N+++PQ  +E AP LF DG  +  F  DE  +G +
Sbjct: 490 QRKIVTVIGMNERKPQKDQEAAPFLFFDGESETSFFEDEEVEGEY 456

[Close]

BLAST of CmUC08G159840 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 1.7e-04
Identity = 22/56 (39.29%), Postives = 29/56 (51.79%), Query Frame = 0


Query: 108 PIWLPSNIKHGVKFRL-----DSTNYVLWKYQVSSILKAHSLFGHIDESLPRPSKF 159
           P +LP +I H   F +     D  NYV WK +  S L+    FG ID +LP+P  F
Sbjct: 17  PYYLPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPF 72

The following BLAST results are available for this feature:

BLAST of CmUC08G159840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885431.1	7.3e-212	71.12	type 2 DNA topoisomerase 6 subunit B-like isoform X2 [Benincasa hispida]	[more]
XP_038885432.1	8.0e-211	70.86	type 2 DNA topoisomerase 6 subunit B-like isoform X3 [Benincasa hispida]	[more]
XP_038885430.1	3.1e-210	70.73	type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Benincasa hispida]	[more]
XP_023545219.1	1.4e-199	68.92	type 2 DNA topoisomerase 6 subunit B-like [Cucurbita pepo subsp. pepo]	[more]
XP_016900028.1	1.4e-199	68.92	PREDICTED: type 2 DNA topoisomerase 6 subunit B-like isoform X4 [Cucumis melo]	[more]

BLAST of CmUC08G159840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5Q0E6	6.6e-83	35.86	Type 2 DNA topoisomerase 6 subunit B-like OS=Arabidopsis thaliana OX=3702 GN=MTO...	[more]

BLAST of CmUC08G159840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DVN5	6.9e-200	68.92	type 2 DNA topoisomerase 6 subunit B-like isoform X4 OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0LMM9	1.1e-197	68.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348270 PE=4 SV=1	[more]
A0A6J1HCF2	1.4e-197	68.19	type 2 DNA topoisomerase 6 subunit B-like isoform X6 OS=Cucurbita moschata OX=36...	[more]
A0A6J1K810	7.1e-197	68.19	type 2 DNA topoisomerase 6 subunit B-like isoform X5 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1HCE6	9.6e-194	65.55	type 2 DNA topoisomerase 6 subunit B-like isoform X1 OS=Cucurbita moschata OX=36...	[more]

BLAST of CmUC08G159840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60460.3	4.7e-84	35.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60460.1	1.4e-83	36.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60460.2	1.9e-80	35.24	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT1G21280.1	1.7e-04	39.29	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034566	Type 2 DNA topoisomerase 6 subunit B-like, plants	PANTHER	PTHR36722	TYPE 2 DNA TOPOISOMERASE 6 SUBUNIT B-LIKE	coord: 5..538

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G159840.1	CmUC08G159840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042138	meiotic DNA double-strand break formation