CmUC08G155450 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G155450
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA ligase
Location	CmU531Chr08: 24709852 .. 24710250 (+)
RNA-Seq Expression	CmUC08G155450
Synteny	CmUC08G155450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACCCCATTTTCATCACTCTCCTTCTTCCCCTCACAACCTCAAATCCTCCTTCTGCTGTTTCCACACCCATTTTCTCCACTCTCCTTCCAAGGCGTCCACAACAGCCCCGTGTTCTTGGTTCAAATCCACCGCCGCTGAACTGTCGGAGTTACTTCACCGCTGCCGGTATCTCCTAGCTCGGATAGCTCGCCGCCGGAAGAAGTACCTTGCCTCCCTCGACTTTTCCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGAACGACTGCCGTGACGACCGTGAGTTTCCCTTAAGAGATTTCACTGCTAGATTCCCCCCGGCCGTCAAGGACCGTCTTCCCCCTCCCAAATTCGCCGCTTCTCAAGATGGAAACCCCATCTCCGCCTGTGGTTGA

mRNA sequence

ATGTTACCCCATTTTCATCACTCTCCTTCTTCCCCTCACAACCTCAAATCCTCCTTCTGCTGTTTCCACACCCATTTTCTCCACTCTCCTTCCAAGGCGTCCACAACAGCCCCGTGTTCTTGGTTCAAATCCACCGCCGCTGAACTGTCGGAGTTACTTCACCGCTGCCGGTATCTCCTAGCTCGGATAGCTCGCCGCCGGAAGAAGTACCTTGCCTCCCTCGACTTTTCCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGAACGACTGCCGTGACGACCGTGAGTTTCCCTTAAGAGATTTCACTGCTAGATTCCCCCCGGCCGTCAAGGACCGTCTTCCCCCTCCCAAATTCGCCGCTTCTCAAGATGGAAACCCCATCTCCGCCTGTGGTTGA

Coding sequence (CDS)

ATGTTACCCCATTTTCATCACTCTCCTTCTTCCCCTCACAACCTCAAATCCTCCTTCTGCTGTTTCCACACCCATTTTCTCCACTCTCCTTCCAAGGCGTCCACAACAGCCCCGTGTTCTTGGTTCAAATCCACCGCCGCTGAACTGTCGGAGTTACTTCACCGCTGCCGGTATCTCCTAGCTCGGATAGCTCGCCGCCGGAAGAAGTACCTTGCCTCCCTCGACTTTTCCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGAACGACTGCCGTGACGACCGTGAGTTTCCCTTAAGAGATTTCACTGCTAGATTCCCCCCGGCCGTCAAGGACCGTCTTCCCCCTCCCAAATTCGCCGCTTCTCAAGATGGAAACCCCATCTCCGCCTGTGGTTGA

Protein sequence

MLPHFHHSPSSPHNLKSSFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLPPPKFAASQDGNPISACG

Homology

[Close]

BLAST of CmUC08G155450 vs. NCBI nr
Match: XP_023546798.1 (uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.1 bits (479), Expect = 2.4e-44
Identity = 92/129 (71.32%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRC 60
           MLPHFHHSP+    LKSSFCCFH      FL SPSK+ TT+PCSWFKST  E   +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTTSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLPP 120
           RYLLARIARRRK+YLAS+DFSYDSSSYALNFE+DCR+D EFP R+FTARFPP +K+R+P 
Sbjct: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120

Query: 121 PKFAASQDG 126
            KFA S+DG
Sbjct: 121 AKFAGSEDG 129

[Close]

BLAST of CmUC08G155450 vs. NCBI nr
Match: XP_022962228.1 (uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothetical protein SDJN03_08335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029495.1 hypothetical protein SDJN02_07834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 91/129 (70.54%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRC 60
           MLPHFHHSP+    LKSSFCCFH      FL SPSK+ T +PCSWFKST  E   +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLPP 120
           RYLLARIARRRK+YLAS+DFSYDSSSYALNFE+DCR+D EFP R+FTARFPP +K+R+P 
Sbjct: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120

Query: 121 PKFAASQDG 126
            KFA S+DG
Sbjct: 121 AKFAGSEDG 129

[Close]

BLAST of CmUC08G155450 vs. NCBI nr
Match: XP_022997531.1 (uncharacterized protein LOC111492424 [Cucurbita maxima])

HSP 1 Score: 185.7 bits (470), Expect = 2.7e-43
Identity = 90/129 (69.77%), Postives = 103/129 (79.84%), Query Frame = 0


Query: 1   MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRC 60
           MLPHFHHSP+    LKSSFCCFH      FL SPSK+ T +PCSWFKST  E   +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLPP 120
           RYLLARIARRRK+YLAS+DF+YDSSSYALNF++DCR+D EFP RDFTARFPP +K+R P 
Sbjct: 61  RYLLARIARRRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPA 120

Query: 121 PKFAASQDG 126
            KFA S+DG
Sbjct: 121 AKFAGSEDG 129

[Close]

BLAST of CmUC08G155450 vs. NCBI nr
Match: XP_008445585.1 (PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-33
Identity = 78/113 (69.03%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 18  SFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFS 77
           SFCCFH      PS    T+PCSW KSTA ELS LL RCRY LAR+ARRR  YLAS DFS
Sbjct: 5   SFCCFH------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFS 64

Query: 78  YDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLP-PPKFAASQDGNPIS 130
           YDSSSYALNF++DCRDD +FP RDFTARFPP +KDRLP   KFA S    PIS
Sbjct: 65  YDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPIS 111

[Close]

BLAST of CmUC08G155450 vs. NCBI nr
Match: XP_022131639.1 (uncharacterized protein LOC111004768 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-27
Identity = 78/133 (58.65%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 1   MLPHFHHSPSSPHNLKSSFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLL 60
           ML  FHHS S  H LKSS  CF      +  + ST +PCSWFKSTAAE  +LL RCRYL+
Sbjct: 1   MLADFHHSSSFAHKLKSSIGCF-----RASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLV 60

Query: 61  ARIAR-RRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLPPPKF 120
           ARI R  R++Y AS DF+YDSSSYALNFE+D R D EFPLR+F AR P     RLP  KF
Sbjct: 61  ARIGRGSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLPAAKF 120

Query: 121 AASQDG-NPISAC 132
           A SQ G + ++AC
Sbjct: 121 AGSQAGVSTVAAC 123

[Close]

BLAST of CmUC08G155450 vs. ExPASy TrEMBL
Match: A0A6J1HE78 (uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC111462741 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.8e-44
Identity = 91/129 (70.54%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRC 60
           MLPHFHHSP+    LKSSFCCFH      FL SPSK+ T +PCSWFKST  E   +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLPP 120
           RYLLARIARRRK+YLAS+DFSYDSSSYALNFE+DCR+D EFP R+FTARFPP +K+R+P 
Sbjct: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120

Query: 121 PKFAASQDG 126
            KFA S+DG
Sbjct: 121 AKFAGSEDG 129

[Close]

BLAST of CmUC08G155450 vs. ExPASy TrEMBL
Match: A0A6J1K7R1 (uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43
Identity = 90/129 (69.77%), Postives = 103/129 (79.84%), Query Frame = 0


Query: 1   MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRC 60
           MLPHFHHSP+    LKSSFCCFH      FL SPSK+ T +PCSWFKST  E   +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLPP 120
           RYLLARIARRRK+YLAS+DF+YDSSSYALNF++DCR+D EFP RDFTARFPP +K+R P 
Sbjct: 61  RYLLARIARRRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPA 120

Query: 121 PKFAASQDG 126
            KFA S+DG
Sbjct: 121 AKFAGSEDG 129

[Close]

BLAST of CmUC08G155450 vs. ExPASy TrEMBL
Match: A0A1S3BDX7 (uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33
Identity = 78/113 (69.03%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 18  SFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFS 77
           SFCCFH      PS    T+PCSW KSTA ELS LL RCRY LAR+ARRR  YLAS DFS
Sbjct: 5   SFCCFH------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFS 64

Query: 78  YDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLP-PPKFAASQDGNPIS 130
           YDSSSYALNF++DCRDD +FP RDFTARFPP +KDRLP   KFA S    PIS
Sbjct: 65  YDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPIS 111

[Close]

BLAST of CmUC08G155450 vs. ExPASy TrEMBL
Match: A0A6J1BQU1 (uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004768 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.9e-28
Identity = 78/133 (58.65%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 1   MLPHFHHSPSSPHNLKSSFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLL 60
           ML  FHHS S  H LKSS  CF      +  + ST +PCSWFKSTAAE  +LL RCRYL+
Sbjct: 1   MLADFHHSSSFAHKLKSSIGCF-----RASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLV 60

Query: 61  ARIAR-RRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLPPPKF 120
           ARI R  R++Y AS DF+YDSSSYALNFE+D R D EFPLR+F AR P     RLP  KF
Sbjct: 61  ARIGRGSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLPAAKF 120

Query: 121 AASQDG-NPISAC 132
           A SQ G + ++AC
Sbjct: 121 AGSQAGVSTVAAC 123

[Close]

BLAST of CmUC08G155450 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 60/124 (48.39%), Postives = 72/124 (58.06%), Query Frame = 0


Query: 1   MLPHFHHSPSSPHNLKSSFCCF---HTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCR 60
           M+ + +H  S    LKSS  CF   H  FL +   +S   P S  KS AAE  EL   CR
Sbjct: 1   MMLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCR 60

Query: 61  YLLARIARRRKKYLASLDFSYDSSSYALNFEND-CRDDREFPLRDFTARFP--PAVKDRL 119
            L+ARI R R++Y  S DF YD SSYALNFE++  RDD EFP+RDF +R P  P    RL
Sbjct: 61  NLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPRL 120

[Close]

BLAST of CmUC08G155450 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 3.3e-07
Identity = 42/125 (33.60%), Postives = 57/125 (45.60%), Query Frame = 0


Query: 13  HNLKSSFCCFHTHFLHSP-------SKASTTAPCSWFKSTAAELSELLHRCRYLLARIAR 72
           H ++S  CC   + +  P        + +  +P  W KSTA EL EL  RCR + +RI  
Sbjct: 20  HRMRSPICCIGANAVVEPEAMMIGGEQRTPRSPYEWLKSTAQEL-ELRDRCRRVKSRIKV 79

Query: 73  RRKKYLASL---------------DFSYDSSSYALNFENDCRDDREFPLRDFTARFP--P 114
             +    +                DFSYD  SYALNFE++ R D +    +FTAR P  P
Sbjct: 80  TCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFEDNVRADDDGSFPNFTARLPQSP 139

The following BLAST results are available for this feature:

BLAST of CmUC08G155450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546798.1	2.4e-44	71.32	uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo]	[more]
XP_022962228.1	1.2e-43	70.54	uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothet...	[more]
XP_022997531.1	2.7e-43	69.77	uncharacterized protein LOC111492424 [Cucurbita maxima]	[more]
XP_008445585.1	3.3e-33	69.03	PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]	[more]
XP_022131639.1	2.0e-27	58.65	uncharacterized protein LOC111004768 [Momordica charantia]	[more]

BLAST of CmUC08G155450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G155450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HE78	5.8e-44	70.54	uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC1114627...	[more]
A0A6J1K7R1	1.3e-43	69.77	uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424...	[more]
A0A1S3BDX7	1.6e-33	69.03	uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=...	[more]
A0A6J1BQU1	9.9e-28	58.65	uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1FP70	2.5e-15	48.39	uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]

BLAST of CmUC08G155450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11070.1	3.3e-07	33.60	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168:SF61	SUBFAMILY NOT NAMED	coord: 10..109
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 10..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G155450.1	CmUC08G155450.1	mRNA