CmUC08G153410 (gene) Watermelon (USVL531) v1

Overview
NameCmUC08G153410
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr08: 22888932 .. 22890112 (+)
RNA-Seq ExpressionCmUC08G153410
SyntenyCmUC08G153410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCAATCGATTTGGCGTCTTATTCATTTAGATATTTTCGATGTGTTGACTTTAAACTATTTGTTCTTGGATTTGGGTGAGAATTTTCCCCTCTTAATTTTTTAACATAATTTTTTTTAGGGGCATCTTCTAATTTTAATTTGTGGTTACGAGGGGCTTAGTGAATGAATGACGTTGAGAAAAAGCTGAAAAAAGAAGGATTAAACTTCATATGACAATAATTTTGAAAAAGAAAACAGCCCATGTTCAAGCAAGCTAAGATAGATGACGATTTACCAATTCTTATCTAATATTTATTCGATAGAAATTTAAACAGATTTTATAAGGTGGGGAATTCTGAAAACTTTTAAATTTCTTTCCTTGAAGATCCAAACAAGCAAAGCTACTTCAAATATGTTGCCTCGTTAATTTCCTTTCTGGGTTTGTTCCAACCCCTAATATTACAAAAATTACAACTAAAACTATGGCCGATAGAAACGCAGCAAATATTAAACCCTATTCAAACGCCTGTTCATAACCAAGGAATGAACAAACATTAGTTTCAAAGAAGAGAGGCCTATTCTGGAGATGGCATTGCAGCTAGGATTTCATCTCAGAAGCCAATTCAGCGTCTCAATCATAAGATAGATAAAGGAGCCCAATAGCAAGAATCAGCGAGAATGAAGGATTTGGACCTGACAAAATTGAGCGATGTTAATTTCTTCTAGCGTTGACCTCTCATCAGATCTCAGTGGACGTCGGCTTGATTACGATGATGATAGACGTTCCAATGCCTCCCGAGCGGTGGATAATCGTGGTTCGATATTCAAAGCTTCTTCATATGCTTTCTTGGCCTCTCCTCTCAGTTTCTTGATCTCGTAGCATTTCCCCAACCAATAGTAGGAATTTGCATTCTGACTCAGTTTCACGGACTCGGTCAAGTCGGCCAAAGCCGAGTCAACTAGGGCTCGCCGGTTCGTGGACATCTTCAACTCAGCTCGCTTGAGCAACGCGTCGCCTCGCTCCTCATCGCTGAGCGACTTAGCGACGAGCGGCGACAGAGCCGTACCGAGAGATTCCAGAGCAGAGGTTTTAAATCCTTGAATGTCGAGAGCCAGAGCTTTGAGGATGTGAGCAGCGGCATCCTTAGGATCGAGAGCGATGGCCTTATTGGCTTCCGCTACGACTTCTTCCGCTAA

mRNA sequence

ATGGTTCAATCGATTTGGCGTCTTATTCATTTAGATATTTTCGATGTGTTGACTTTAAACTATTTGTTCTTGGATTTGGCGTTGACCTCTCATCAGATCTCAGTGGACGTCGGCTTGATTACGATGATGATAGACGTTCCAATGCCTCCCGAGCGGTGGATAATCGTGGGCTCGCCGGTTCGTGGACATCTTCAACTCAGCTCGCTTGAGCAACGCGTCGCCTCGCTCCTCATCGCTGAGCGACTTAGCGACGAGCGGCGACAGAGCCGTACCGAGAGATTCCAGAGCAGAGGTTTTAAATCCTTGAATGTCGAGAGCCAGAGCTTTGAGGATGTGAGCAGCGGCATCCTTAGGATCGAGAGCGATGGCCTTATTGGCTTCCGCTACGACTTCTTCCGCTAA

Coding sequence (CDS)

ATGGTTCAATCGATTTGGCGTCTTATTCATTTAGATATTTTCGATGTGTTGACTTTAAACTATTTGTTCTTGGATTTGGCGTTGACCTCTCATCAGATCTCAGTGGACGTCGGCTTGATTACGATGATGATAGACGTTCCAATGCCTCCCGAGCGGTGGATAATCGTGGGCTCGCCGGTTCGTGGACATCTTCAACTCAGCTCGCTTGAGCAACGCGTCGCCTCGCTCCTCATCGCTGAGCGACTTAGCGACGAGCGGCGACAGAGCCGTACCGAGAGATTCCAGAGCAGAGGTTTTAAATCCTTGAATGTCGAGAGCCAGAGCTTTGAGGATGTGAGCAGCGGCATCCTTAGGATCGAGAGCGATGGCCTTATTGGCTTCCGCTACGACTTCTTCCGCTAA

Protein sequence

MVQSIWRLIHLDIFDVLTLNYLFLDLALTSHQISVDVGLITMMIDVPMPPERWIIVGSPVRGHLQLSSLEQRVASLLIAERLSDERRQSRTERFQSRGFKSLNVESQSFEDVSSGILRIESDGLIGFRYDFFR
Homology
[Close]
BLAST of CmUC08G153410 vs. NCBI nr
Match: XP_004309784.1 (PREDICTED: 60S ribosomal protein L5-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 0 

Query: 57  GSPVRGHLQLSSLEQRVASLLIAERLSDERRQSRTERFQSRGFKSLNVESQSFEDVSSGI 116
           G PV  +  L  L +RVA+L + E L  ER +   +  +SR F++L VES+  EDVS  +
Sbjct: 50  GPPVHRNFNLRPLAKRVAALSVEEALLVERGERDVDGVESRCFEALGVESEGCEDVSGSV 109

Query: 117 LRIESDGLIGFR 129
            RIESDGL+G R
Sbjct: 110 FRIESDGLVGMR 121

[Close]
BLAST of CmUC08G153410 vs. NCBI nr
Match: XP_004305467.1 (PREDICTED: 60S ribosomal protein L5-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-04
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0 

Query: 57  GSPVRGHLQLSSLEQRVASLLIAERLSDERRQSRTERFQSRGFKSLNVESQSFEDVSSGI 116
           G PV  +L L  L +RVA+L + E L  E  +   +  +S  F++L VES+  EDVS  +
Sbjct: 50  GPPVHRNLNLRPLVKRVAALSVEEALLAELGERDVDGVESGCFEALGVESEGCEDVSGSV 109

Query: 117 LRIESDGLIGFR 129
            RIESDGL+G R
Sbjct: 110 FRIESDGLVGVR 121

[Close]
BLAST of CmUC08G153410 vs. NCBI nr
Match: XP_004298034.1 (PREDICTED: 60S ribosomal protein L5-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 54.3 bits (129), Expect = 9.3e-04
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 57  GSPVRGHLQLSSLEQRVASLLIAERLSDERRQSRTERFQSRGFKSLNVESQSFEDVSSGI 116
           G PV  +L L    +RVA+L + E L  ER +   +  +S  F++L VES+  EDV   +
Sbjct: 50  GPPVHQNLNLRPPVKRVAALSVEEALLAERGERDVDGVESGCFEALGVESEGCEDVRGSV 109

Query: 117 LRIESDGLIGFR 129
            RIESDGL+G R
Sbjct: 110 FRIESDGLVGVR 121

The following BLAST results are available for this feature:
BLAST of CmUC08G153410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004309784.11.3e-0545.83PREDICTED: 60S ribosomal protein L5-like [Fragaria vesca subsp. vesca][more]
XP_004305467.12.5e-0444.44PREDICTED: 60S ribosomal protein L5-like [Fragaria vesca subsp. vesca][more]
XP_004298034.19.3e-0443.06PREDICTED: 60S ribosomal protein L5-like [Fragaria vesca subsp. vesca][more]
BLAST of CmUC08G153410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC08G153410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC08G153410 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC08G153410.1CmUC08G153410.1mRNA