CmUC08G148570 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G148570
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	extensin-like
Location	CmU531Chr08: 17996434 .. 17996730 (+)
RNA-Seq Expression	CmUC08G148570
Synteny	CmUC08G148570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTTGTAGTATTGGCCTCATATCTTTCCTTCCTTCTCCTTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATCACATTCACCCATCTTCATCCATCAACCACCATAAACACAAAGCTCCGCGGCTGCCACCGTCACCTCCGATCTGCAAGCATGCTGCACCACCACCGCCAGCCGAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCACCACCGCTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCGCTAAATCGCCTCCACCTCCTTTCTAA

mRNA sequence

ATGAGGTTTGTAGTATTGGCCTCATATCTTTCCTTCCTTCTCCTTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATCACATTCACCCATCTTCATCCATCAACCACCATAAACACAAAGCTCCGCGGCTGCCACCGTCACCTCCGATCTGCAAGCATGCTGCACCACCACCGCCAGCCGAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCACCACCGCTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCGCTAAATCGCCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGAGGTTTGTAGTATTGGCCTCATATCTTTCCTTCCTTCTCCTTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATCACATTCACCCATCTTCATCCATCAACCACCATAAACACAAAGCTCCGCGGCTGCCACCGTCACCTCCGATCTGCAAGCATGCTGCACCACCACCGCCAGCCGAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCACCACCGCTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCGCTAAATCGCCTCCACCTCCTTTCTAA

Protein sequence

MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF

Homology

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BLAST of CmUC08G148570 vs. NCBI nr
Match: KAA0058957.1 (hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK10990.1 hypothetical protein E5676_scaffold874G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-16
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP--RLPPSPPICKHAA 60
          M F  LASYL  LL+AFF LNLP+KLTAH+IH SSS N + + AP   LPP PPIC+  A
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPPLPLPPPPPICRQGA 60

Query: 61 PPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
           PPPA+KQ + K LP   PP PP   WP++FT KSPPPPF
Sbjct: 61 -PPPAKKQNKLKQLPSLSPP-PPMFKWPRRFTPKSPPPPF 98

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BLAST of CmUC08G148570 vs. NCBI nr
Match: TYK29731.1 (hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 63/140 (45.00%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPP 60
           M FV+LASYL FLL AFFSLNLPSKLTAH+IHPSS     ++K P LP    +C + APP
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 61  P-----------------------PAEKQYEFKPLP--------LTPPPL---------- 99
           P                       PA+K+Y+FKP P           PPL          
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

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BLAST of CmUC08G148570 vs. NCBI nr
Match: XP_023551507.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 9   YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP----------RLP-PSPPICKHA 68
           YL  LL+A  SL+LPSKL A  +HPS   N H+++ P          +LP P P +C   
Sbjct: 10  YLFSLLIALLSLDLPSKLAAPSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQL 69

Query: 69  APPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
           APPPP + +++FKP P  P P+P    W +KFT KSPPPPF
Sbjct: 70  APPPPPKNRHKFKPSP--PHPMP----WQRKFTHKSPPPPF 104

[Close]

BLAST of CmUC08G148570 vs. NCBI nr
Match: KAG6578902.1 (hypothetical protein SDJN03_23350, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-06
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 1   MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPP 60
           M  ++  SY   LL+ F SL LPSKLTA++IHP           P  PP P +  H A P
Sbjct: 70  MGSLIFKSYFFLLLIVFVSLYLPSKLTAYYIHP-----------PLRPPPPSV--HGA-P 129

Query: 61  PPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
           PPA+K+Y+FK     PPP  P   WP +F  KSPPPP+
Sbjct: 130 PPAKKKYKFK----APPPPAPAKPWPIRFHHKSPPPPY 149

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BLAST of CmUC08G148570 vs. NCBI nr
Match: XP_022993352.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-05
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1   MRFVVLAS-YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP------RLP-PSPP 60
           M  ++LAS YL  LL+A  SL+LPSKL A  +HPS   N H+++ P      +LP P P 
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPPPS 60

Query: 61  ICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
           +C   APPPP + +++FK  P  P  +PP   W +KFT  SPPPPF
Sbjct: 61  VCTQLAPPPP-KNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 100

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BLAST of CmUC08G148570 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-18
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLP--PSPPICKHAA 60
          M F  LASYL  LL+AFF LNLPSKLTAH+IH SSS N +++  P LP  P PPIC+  A
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLLPPPPICRQGA 60

Query: 61 PPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
           PPPA+KQ + KPLP   PP PPK  WP++FT KSPPPPF
Sbjct: 61 -PPPAKKQNKLKPLPSLSPP-PPKFKWPRRFTPKSPPPPF 98

[Close]

BLAST of CmUC08G148570 vs. ExPASy TrEMBL
Match: A0A5A7UW72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00250 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-16
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP--RLPPSPPICKHAA 60
          M F  LASYL  LL+AFF LNLP+KLTAH+IH SSS N + + AP   LPP PPIC+  A
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPPLPLPPPPPICRQGA 60

Query: 61 PPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
           PPPA+KQ + K LP   PP PP   WP++FT KSPPPPF
Sbjct: 61 -PPPAKKQNKLKQLPSLSPP-PPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of CmUC08G148570 vs. ExPASy TrEMBL
Match: A0A5D3E2A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63236G00010 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.9e-14
Identity = 63/140 (45.00%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPP 60
           M FV+LASYL FLL AFFSLNLPSKLTAH+IHPSS     ++K P LP    +C + APP
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 61  P-----------------------PAEKQYEFKPLP--------LTPPPL---------- 99
           P                       PA+K+Y+FKP P           PPL          
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

[Close]

BLAST of CmUC08G148570 vs. ExPASy TrEMBL
Match: A0A6J1JSJ5 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1   MRFVVLAS-YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP------RLP-PSPP 60
           M  ++LAS YL  LL+A  SL+LPSKL A  +HPS   N H+++ P      +LP P P 
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPPPS 60

Query: 61  ICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
           +C   APPPP + +++FK  P  P  +PP   W +KFT  SPPPPF
Sbjct: 61  VCTQLAPPPP-KNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 100

[Close]

BLAST of CmUC08G148570 vs. ExPASy TrEMBL
Match: A0A6J1FFZ9 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.1e-05
Identity = 49/111 (44.14%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   MRFVVLAS-YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP----------RLP- 60
           M  ++L+S YL  LL+A  SL+LPSKL A  +HPS   N H+++ P          +LP 
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PSPPICKHAAPPPPAEK-QYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
           P P +C   APPPP  K +++FK  P  P  +PP   W +KFT  SPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPPKNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 106

The following BLAST results are available for this feature:

BLAST of CmUC08G148570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058957.1	6.0e-16	61.00	hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK1099...	[more]
TYK29731.1	1.6e-13	45.00	hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]	[more]
XP_023551507.1	1.0e-07	46.53	extensin-3-like [Cucurbita pepo subsp. pepo]	[more]
KAG6578902.1	9.6e-06	45.92	hypothetical protein SDJN03_23350, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022993352.1	2.8e-05	46.23	extensin-like [Cucurbita maxima]	[more]

BLAST of CmUC08G148570 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G148570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI69	5.3e-18	63.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1	[more]
A0A5A7UW72	2.9e-16	61.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E2A1	7.9e-14	45.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JSJ5	1.4e-05	46.23	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1	[more]
A0A6J1FFZ9	5.1e-05	44.14	extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1	[more]

BLAST of CmUC08G148570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G148570.1	CmUC08G148570.1	mRNA