CmUC08G145750 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G145750
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Retrotransposon protein
Location	CmU531Chr08: 9253616 .. 9253912 (+)
RNA-Seq Expression	CmUC08G145750
Synteny	CmUC08G145750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCACCCGGATCACGCGCAAGAGCTTCAAAACATATTTGGATGGATGAAGAGAACAGAATCCTGGTGGAGTGTTTGGTTCTGTGTGTGCAGTCTGGACACTGGCGAGTTGATAACGGAACTTTTCAACCTGGATTCCTAGCAAATGTACTACGGATGTTGCAGCAAAGGGTTCCAGGGAGTTCCATACAAGTAAGCCCAAATTTGGAGTCCAAGGTCAGGACGTTGAAGAGAAACTACAGCGCGATTGCTAAATGTTGGGCTCAGGATCTAGTGGGTTTGGTTCGAATGTAG

mRNA sequence

ATGGAAGCACCCGGATCACGCGCAAGAGCTTCAAAACATATTTGGATGGATGAAGAGAACAGAATCCTGGTGGAGTGTTTGGTTCTGTGTGTGCAGTCTGGACACTGGCGAGTTGATAACGGAACTTTTCAACCTGGATTCCTAGCAAATGTACTACGGATGTTGCAGCAAAGGGTTCCAGGGAGTTCCATACAAGTAAGCCCAAATTTGGAGTCCAAGGTCAGGACGTTGAAGAGAAACTACAGCGCGATTGCTAAATGTTGGGCTCAGGATCTAGTGGGTTTGGTTCGAATGTAG

Coding sequence (CDS)

ATGGAAGCACCCGGATCACGCGCAAGAGCTTCAAAACATATTTGGATGGATGAAGAGAACAGAATCCTGGTGGAGTGTTTGGTTCTGTGTGTGCAGTCTGGACACTGGCGAGTTGATAACGGAACTTTTCAACCTGGATTCCTAGCAAATGTACTACGGATGTTGCAGCAAAGGGTTCCAGGGAGTTCCATACAAGTAAGCCCAAATTTGGAGTCCAAGGTCAGGACGTTGAAGAGAAACTACAGCGCGATTGCTAAATGTTGGGCTCAGGATCTAGTGGGTTTGGTTCGAATGTAG

Protein sequence

MEAPGSRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAKCWAQDLVGLVRM

Homology

[Close]

BLAST of CmUC08G145750 vs. NCBI nr
Match: KAA0041970.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 5.4e-17
Identity = 41/77 (53.25%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 10  ASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPN 69
           A+KH W   EN  LVECL+  V+ G WRVDNGTF+ G+L  V +++++++P S+IQV+PN
Sbjct: 224 ANKHQWTTIENEALVECLLQLVEEGGWRVDNGTFKSGYLVQVQKLMKEKIPESNIQVTPN 283

Query: 70  LESKVRTLKRNYSAIAK 87
           LES+V+ LK+ Y+ IAK
Sbjct: 284 LESRVKILKKQYTVIAK 300

[Close]

BLAST of CmUC08G145750 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-16
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 6  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
          S +RA KH W  EE    VECLV  V SG WR DNGTFQPG+LA + RM+ +++PG++IQ
Sbjct: 3  SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66 VSPNLESKVRTLKRNYSAIAK 87
           S  ++  V++LK+ Y AIA+
Sbjct: 63 ESSTIDCHVKSLKKTYHAIAE 83

[Close]

BLAST of CmUC08G145750 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-16
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 6  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
          S +RA KH+W  EE   LVEC+V  V +G W+ DNGTF+PG+LA +LRM+  ++PG ++ 
Sbjct: 3  SSSRAPKHVWTKEEEATLVECMVKLVSAGRWKSDNGTFRPGYLAQLLRMMVVKLPGCNVH 62

Query: 66 VSPNLESKVRTLKRNYSAIAK 87
           +  ++ +++TLKR+Y AIA+
Sbjct: 63 ATTVIDYRIKTLKRSYQAIAE 83

[Close]

BLAST of CmUC08G145750 vs. NCBI nr
Match: KAA0066605.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 6  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
          S +RA KH W  EE   LVECLV  V +G WR +NGTF+PG+LA + RM+ +++P ++IQ
Sbjct: 3  SSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTNIQ 62

Query: 66 VSPNLESKVRTLKRNYSAIAK 87
           SP ++ +V++LK+ Y AIA+
Sbjct: 63 GSPTIDYRVKSLKKTYQAIAE 83

[Close]

BLAST of CmUC08G145750 vs. NCBI nr
Match: KAA0042500.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15
Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 9  RASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSP 68
          RA +H+W  EE   LVECL+  V  G W+ DNGTF+PG+LA ++RM+ +++PG  ++ + 
Sbjct: 6  RALRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 65

Query: 69 NLESKVRTLKRNYSAIAKCW 89
           ++ +++TLKR + AIA+ W
Sbjct: 66 VIDCRIKTLKRTFQAIAEMW 85

[Close]

BLAST of CmUC08G145750 vs. ExPASy TrEMBL
Match: A0A5A7TF70 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001930 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.6e-17
Identity = 41/77 (53.25%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 10  ASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPN 69
           A+KH W   EN  LVECL+  V+ G WRVDNGTF+ G+L  V +++++++P S+IQV+PN
Sbjct: 224 ANKHQWTTIENEALVECLLQLVEEGGWRVDNGTFKSGYLVQVQKLMKEKIPESNIQVTPN 283

Query: 70  LESKVRTLKRNYSAIAK 87
           LES+V+ LK+ Y+ IAK
Sbjct: 284 LESRVKILKKQYTVIAK 300

[Close]

BLAST of CmUC08G145750 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 6  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
          S +RA KH W  EE    VECLV  V SG WR DNGTFQPG+LA + RM+ +++PG++IQ
Sbjct: 3  SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66 VSPNLESKVRTLKRNYSAIAK 87
           S  ++  V++LK+ Y AIA+
Sbjct: 63 ESSTIDCHVKSLKKTYHAIAE 83

[Close]

BLAST of CmUC08G145750 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 6  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
          S +RA KH W  EE    VECLV  V SG WR DNGTFQPG+LA + RM+ +++PG++IQ
Sbjct: 3  SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66 VSPNLESKVRTLKRNYSAIAK 87
           S  ++  V++LK+ Y AIA+
Sbjct: 63 ESSTIDCHVKSLKKTYHAIAE 83

[Close]

BLAST of CmUC08G145750 vs. ExPASy TrEMBL
Match: A0A5D3CQS4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00390 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 6  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
          S +RA KH W  EE   LVECLV  V +G WR +NGTF+PG+LA + RM+ +++P ++IQ
Sbjct: 3  SSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTNIQ 62

Query: 66 VSPNLESKVRTLKRNYSAIAK 87
           SP ++ +V++LK+ Y AIA+
Sbjct: 63 GSPTIDYRVKSLKKTYQAIAE 83

[Close]

BLAST of CmUC08G145750 vs. ExPASy TrEMBL
Match: A0A5A7TGP1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00540 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 9  RASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSP 68
          RA +H+W  EE   LVECL+  V  G W+ DNGTF+PG+LA ++RM+ +++PG  ++ + 
Sbjct: 6  RALRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 65

Query: 69 NLESKVRTLKRNYSAIAKCW 89
           ++ +++TLKR + AIA+ W
Sbjct: 66 VIDCRIKTLKRTFQAIAEMW 85

The following BLAST results are available for this feature:

BLAST of CmUC08G145750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041970.1	5.4e-17	53.25	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nucleas...	[more]
XP_008441954.1	4.6e-16	51.85	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
XP_031742657.1	4.6e-16	46.91	uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact...	[more]
KAA0066605.1	1.7e-15	49.38	retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon p...	[more]
KAA0042500.1	3.0e-15	43.75	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CmUC08G145750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G145750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TF70	2.6e-17	53.25	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U0H7	2.2e-16	51.85	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	2.2e-16	51.85	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3CQS4	8.4e-16	49.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TGP1	1.4e-15	43.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmUC08G145750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 15..90 e-value: 5.4E-6 score: 27.3
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 7..87
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 7..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G145750.1	CmUC08G145750.1	mRNA