CmUC08G144400 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G144400
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RNA-binding protein
Location	CmU531Chr08: 3803890 .. 3804812 (-)
RNA-Seq Expression	CmUC08G144400
Synteny	CmUC08G144400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGTCAAGATAGGTGATACTAGAGCAAGCGATACCAGACTAAATAGAGCGATACTAGCGAGAGCAAGATTGAGCGAGACTAGAGAGAGCGAGAGTGAGAACGAGATTAGACAGAGAGAGCGAAAATATGTAATACCATCTCGCCCTTGCTCGTTTCGCTCTCGTAAGTCTCGCTCTCGCTAGAAGTTTAACAATACGGGTCATAGGCCTCTTTATAGGGTCACCCAAAAAGAAACTCTAAATGTTTAGTAACTGATTCTCATCTTTCTTTACTAAACATTTAGGAGGCGAGAGAAAGCACATATCATTATCCCTCAAGCGTACACTGCTGCCAATCGTCAGTTTTCTGCTTCATTGGTCATTGTTCATGGTAGCAGCCAGCCATGCTGCCGTTCATCCGCTGTTGGTCGTCTGCCCTTCGTCCGTTAGATCGTGCCGCTGCCATCGTGCCTCTACAGCCGTTCGTCAGATTGTACCTCTACCATTTGTTGTAACAGGTTCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTTGGCTTGCAGGTGGTTGAACTGAAGGAACTGGGTGTGAGTGAGGAGCAAGCCATGGCAGTAGCCAATGTATGGATTGCTTGCTATTCTTTTATTCATATACTTCTCTTGAATCTCTTCGGTCAATAATGTCTTTTATCATCCAAATGAATAGGCAGGCAGAGAAAAAGGCGAAAAAGAAGGCTTACTCTCGCTCGAAGCAAATTACACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCTTATCCAAGTGTTATTAAGGAGATACAGGCTGAGGAAAAAAAAATTGTCCACGATCATTTCTTCGACCCCAATATTAAAGAGATTGCACAAAGGTTGAAGGAGGAGAGAGCAATTGAAATGAAGGAAAGAATGCGAGGTAGCTGGTGA

mRNA sequence

ATGCTCGTCAAGATAGGTGATACTAGAGCAAGCGATACCAGACTAAATAGAGCGATACTAGCGAGAGCAAGATTGAGCGAGACTAGAGAGAGCGAGAGTGAGAACGAGATTAGACAGAGAGAGCGAAAATATGTAATACCATCTCGCCCTTGCTCGTTTCGCTCTCGAGGCGAGAGAAAGCACATATCATTATCCCTCAAGCGTACACTGCTGCCAATCGTCAGTTTTCTGCTTCATTGGTCATTGTTCATGGTAGCAGCCAGCCATGCTGCCGTTCATCCGCTGTTGGTCGTCTGCCCTTCGTCCGTTAGATCGTGCCGCTGCCATCGTGCCTCTACAGCCGTTCGTCAGATTGTACCTCTACCATTTGTTGTAACAGGTTCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTTGGCTTGCAGGCAGGCAGAGAAAAAGGCGAAAAAGAAGGCTTACTCTCGCTCGAAGCAAATTACACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCTTATCCAAGTGTTATTAAGGAGATACAGGCTGAGGAAAAAAAAATTGTCCACGATCATTTCTTCGACCCCAATATTAAAGAGATTGCACAAAGGTTGAAGGAGGAGAGAGCAATTGAAATGAAGGAAAGAATGCGAGGTAGCTGGTGA

Coding sequence (CDS)

ATGCTCGTCAAGATAGGTGATACTAGAGCAAGCGATACCAGACTAAATAGAGCGATACTAGCGAGAGCAAGATTGAGCGAGACTAGAGAGAGCGAGAGTGAGAACGAGATTAGACAGAGAGAGCGAAAATATGTAATACCATCTCGCCCTTGCTCGTTTCGCTCTCGAGGCGAGAGAAAGCACATATCATTATCCCTCAAGCGTACACTGCTGCCAATCGTCAGTTTTCTGCTTCATTGGTCATTGTTCATGGTAGCAGCCAGCCATGCTGCCGTTCATCCGCTGTTGGTCGTCTGCCCTTCGTCCGTTAGATCGTGCCGCTGCCATCGTGCCTCTACAGCCGTTCGTCAGATTGTACCTCTACCATTTGTTGTAACAGGTTCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTTGGCTTGCAGGCAGGCAGAGAAAAAGGCGAAAAAGAAGGCTTACTCTCGCTCGAAGCAAATTACACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCTTATCCAAGTGTTATTAAGGAGATACAGGCTGAGGAAAAAAAAATTGTCCACGATCATTTCTTCGACCCCAATATTAAAGAGATTGCACAAAGGTTGAAGGAGGAGAGAGCAATTGAAATGAAGGAAAGAATGCGAGGTAGCTGGTGA

Protein sequence

MLVKIGDTRASDTRLNRAILARARLSETRESESENEIRQRERKYVIPSRPCSFRSRGERKHISLSLKRTLLPIVSFLLHWSLFMVAASHAAVHPLLVVCPSSVRSCRCHRASTAVRQIVPLPFVVTGSVVSILLQPEYLACRQAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGSW

Homology

[Close]

BLAST of CmUC08G144400 vs. NCBI nr
Match: XP_022996766.1 (uncharacterized protein LOC111491881 [Cucurbita maxima] >XP_022996833.1 uncharacterized protein LOC111491881 [Cucurbita maxima] >XP_022996916.1 uncharacterized protein LOC111491881 [Cucurbita maxima] >XP_022996999.1 uncharacterized protein LOC111491881 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-24
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQR
Sbjct: 111 RAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQR 170

Query: 203 LKEERAIEMKERMRGS 219
           LKEERA EM++RMRGS
Sbjct: 171 LKEERAAEMQDRMRGS 186

[Close]

BLAST of CmUC08G144400 vs. NCBI nr
Match: XP_022957544.1 (uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_022957545.1 uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_022957546.1 uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_022957547.1 uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_023513675.1 uncharacterized protein LOC111778212 [Cucurbita pepo subsp. pepo] >XP_023513683.1 uncharacterized protein LOC111778212 [Cucurbita pepo subsp. pepo] >XP_023513691.1 uncharacterized protein LOC111778212 [Cucurbita pepo subsp. pepo] >XP_023513699.1 uncharacterized protein LOC111778212 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-24
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQR
Sbjct: 111 RAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQR 170

Query: 203 LKEERAIEMKERMRGS 219
           LKEERA EM++RMRGS
Sbjct: 171 LKEERAAEMQDRMRGS 186

[Close]

BLAST of CmUC08G144400 vs. NCBI nr
Match: KAG7032230.1 (hypothetical protein SDJN02_06273 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-24
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQR
Sbjct: 111 RAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQR 170

Query: 203 LKEERAIEMKERMRGS 219
           LKEERA EM++RMRGS
Sbjct: 171 LKEERAAEMQDRMRGS 186

[Close]

BLAST of CmUC08G144400 vs. NCBI nr
Match: KAG6601448.1 (Galactoside 2-alpha-L-fucosyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-24
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQR
Sbjct: 698 RAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQR 757

Query: 203 LKEERAIEMKERMRGS 219
           LKEERA EM++RMRGS
Sbjct: 758 LKEERAAEMQDRMRGS 773

[Close]

BLAST of CmUC08G144400 vs. NCBI nr
Match: XP_038891818.1 (uncharacterized protein LOC120081194 [Benincasa hispida] >XP_038891819.1 uncharacterized protein LOC120081194 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-23
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+  V D FF+P IKEIAQR
Sbjct: 111 RAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERNFVRDRFFNPKIKEIAQR 170

Query: 203 LKEERAIEMKERMRGSW 220
           LKEERA EM+ER + SW
Sbjct: 171 LKEERAAEMQERAQSSW 187

[Close]

BLAST of CmUC08G144400 vs. ExPASy TrEMBL
Match: A0A6J1KC52 (uncharacterized protein LOC111491881 OS=Cucurbita maxima OX=3661 GN=LOC111491881 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-24
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQR
Sbjct: 111 RAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQR 170

Query: 203 LKEERAIEMKERMRGS 219
           LKEERA EM++RMRGS
Sbjct: 171 LKEERAAEMQDRMRGS 186

[Close]

BLAST of CmUC08G144400 vs. ExPASy TrEMBL
Match: A0A6J1GZF0 (uncharacterized protein LOC111458914 OS=Cucurbita moschata OX=3662 GN=LOC111458914 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-24
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQR
Sbjct: 111 RAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQR 170

Query: 203 LKEERAIEMKERMRGS 219
           LKEERA EM++RMRGS
Sbjct: 171 LKEERAAEMQDRMRGS 186

[Close]

BLAST of CmUC08G144400 vs. ExPASy TrEMBL
Match: A0A6J1DDQ7 (uncharacterized protein LOC111019147 OS=Momordica charantia OX=3673 GN=LOC111019147 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.5e-23
Identity = 60/75 (80.00%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKK KKKAY+R KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQR
Sbjct: 111 RAEKKVKKKAYARLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQR 170

Query: 203 LKEERAIEMKERMRG 218
           LKEERA EM++RMRG
Sbjct: 171 LKEERAAEMQDRMRG 185

[Close]

BLAST of CmUC08G144400 vs. ExPASy TrEMBL
Match: A0A1S3BEG4 (uncharacterized protein LOC103489146 OS=Cucumis melo OX=3656 GN=LOC103489146 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKK KKKAYSR KQI RLQGKKPPPNP+PS IK+IQAEE+K V D FF+P IKEIAQR
Sbjct: 111 RAEKKMKKKAYSRLKQIARLQGKKPPPNPFPSAIKQIQAEERKYVRDRFFNPKIKEIAQR 170

Query: 203 LKEERAIEMKERMRGSW 220
           LKEE+A EM+ER RG W
Sbjct: 171 LKEEKAAEMQERKRGGW 187

[Close]

BLAST of CmUC08G144400 vs. ExPASy TrEMBL
Match: A0A5A7SZA7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00210 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 143 QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQR 202
           +AEKK KKKAYSR KQI RLQGKKPPPNP+PS IK+IQAEE+K V D FF+P IKEIAQR
Sbjct: 111 RAEKKMKKKAYSRLKQIARLQGKKPPPNPFPSAIKQIQAEERKYVRDRFFNPKIKEIAQR 170

Query: 203 LKEERAIEMKERMRGSW 220
           LKEE+A EM+ER RG W
Sbjct: 171 LKEEKAAEMQERKRGGW 187

[Close]

BLAST of CmUC08G144400 vs. TAIR 10
Match: AT1G26750.1 (unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-08
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 137 EYLACRQAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNI 196
           EYL    +E+K  KKAY R K++  +Q K PPP PYPS  K +  + K    D F  P++
Sbjct: 109 EYL----SERKEMKKAYKRLKELAVMQDKDPPPKPYPSAKKGLITQSKTSAKDRFQTPSV 168

Query: 197 KEIAQRLKEERAIEMKERMRGS 219
           + +  +LK E+ + +++R  GS
Sbjct: 169 RRLVNQLKNEKDVLLQDRTGGS 186

The following BLAST results are available for this feature:

BLAST of CmUC08G144400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022996766.1	6.0e-24	82.89	uncharacterized protein LOC111491881 [Cucurbita maxima] >XP_022996833.1 uncharac...	[more]
XP_022957544.1	6.0e-24	82.89	uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_022957545.1 unchar...	[more]
KAG7032230.1	6.0e-24	82.89	hypothetical protein SDJN02_06273 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601448.1	6.0e-24	82.89	Galactoside 2-alpha-L-fucosyltransferase, partial [Cucurbita argyrosperma subsp....	[more]
XP_038891818.1	3.9e-23	79.22	uncharacterized protein LOC120081194 [Benincasa hispida] >XP_038891819.1 unchara...	[more]

BLAST of CmUC08G144400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G144400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KC52	2.9e-24	82.89	uncharacterized protein LOC111491881 OS=Cucurbita maxima OX=3661 GN=LOC111491881...	[more]
A0A6J1GZF0	2.9e-24	82.89	uncharacterized protein LOC111458914 OS=Cucurbita moschata OX=3662 GN=LOC1114589...	[more]
A0A6J1DDQ7	5.5e-23	80.00	uncharacterized protein LOC111019147 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S3BEG4	7.2e-23	76.62	uncharacterized protein LOC103489146 OS=Cucumis melo OX=3656 GN=LOC103489146 PE=...	[more]
A0A5A7SZA7	7.2e-23	76.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmUC08G144400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26750.1	2.2e-08	37.80	unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..172
None	No IPR available	PANTHER	PTHR35693:SF1	EXPRESSED PROTEIN	coord: 143..218
None	No IPR available	PANTHER	PTHR35693	EXPRESSED PROTEIN	coord: 143..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G144400.1	CmUC08G144400.1	mRNA