CmUC08G144090 (gene) Watermelon (USVL531) v1

Overview
NameCmUC08G144090
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrotransposon protein
LocationCmU531Chr08: 2884558 .. 2890477 (-)
RNA-Seq ExpressionCmUC08G144090
SyntenyCmUC08G144090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATGGTACCGGCCATAGCTATAGCGACGTTTAACAGCGGCGGCGCTAAAAAAAACAACGGGCATTGACAATGGTTTCAAAAGATGTAGCAAAGGATTTGATTAGGGTTTCAAATAGATGCAAACAAAGATCGAAAACTACTGGGATTTTCAAGAAAAATGTAATAAAAACACATAGACCCGAGAACCTTTTCTCTGCACGTGGTTGGTCTTGCAAAAAAAAAAAAAAAAAAAGGTCAGGTTGTTAAATGCATAAAGCAGTAGAAGAAGAATGTTTTGAAGAAAAGCCATAAATCTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGAGTTCAATTTTCAAAGCCTACCAAAGAAAGTGCGGTTAAGTTTGAATTGCATTTGGGTGCCAATCTCAACTTAATTTATAGACAGTACGAAATAGATACGGTTGGGAAGATTACGTTTCAAAATCTAAAATCCAAATAGCTTTGGATTCGGACGAGAAAAAAAAAACATAAGAAGAGAAAACAAGGGGAAAAAAAAGCCTCAAGCAGAGGTTAATCAGAAAATGCATAAATGCAAAACCTTAAAGGAAGATTCACAAAGTAGTGGAAGAAGAACCTCATGGAATTTTTTTTTTTTTTTATCAGAACCTTAAAGAAATTCGCTTAAGTTTGGATTTCAAACAAGCCAATTTCACTCTATTTATGGAGGGAAGTGAGTTGAAGGAAATTTCTAAGAAAGTTGATATAAGGAATCCAAATTTTAAAAAAATATTAGGAAAAACGGGTAGTTTTTTTGTCTTTATATGAATGACAAACAGTCAAATGATCAAACTGAACGGCAAAGTGAAGTGCCATTGGTTTTGATGGCATTCTAGCCTTTTTTTGAAAAAAAATTATTTTTTTAATGTCAGTTTGAATTATCAACTTACTAGGAAGCCAGACAGAGCAGGAGCGAGACAACACTTTATGGGAAGTGAGCTCTCTATCACTTTTCCCGTAAAGTGTTGATCGGATCTTTACGGAAAAAGTAAAAGAGAGCTTTCATTCATTTCCTTCCTGTGACTTGAATTCCTGGTAGGTTCTCCTCTTCGTTCCTTTCCTTCCTAACCTTCCTATTCTCCCATAAAGTTATTTTTATTTAAGATTCTAAAATTAAAATAATAAGTCCTGGTAAGTTTCTGTCCATTTTCCCAGTGGAAATGATACCAGGAAAATTGTACCAAAACAATAGTTTATTTTTTTAATTAATAATTCAAATTTACATTAAAAAATAATTTTTTCAAAAAAATGGCAAAATGCCATAAAAAAGGGAGACACTTCTCTTTTCCGTTCAGTTTGACAAATCTGACTGTGACAGAGAGTCTAACATTCAAATAAAGACAAAAATTATTACCCCTTTTACCTAATTTTTTTTTTAAAAAAAAGTACCTTTTTTCTAATTAACCCCCAAATAAGTAAAGGTTTAAATTTAAATACTACTAGATTTTGGAGAGTTAACCTCTCAAACAAAATATAGAGTGATTTGGAGATTAAATAGAATGTTTTGGTTTTATCCTAGCTAAAATATTTGTTTAAATTACTTTTTGAGTCCAAATTTTTATGAAATGGTGCATTAAAAAGATTTAAATAAACTTTAAATTCCACTCAAATATTGGAATTTCAAGCACAAATGCTTGTATTGTCTAGACACTAAAATTAGTGTCGCCAATAGTCAATTGATACACATATATGTGAGATGCAAAATCAAATTATGAACCAAATTCATATTTTGATAAGTTAAATTAAAATTGTTACTAAAAGTATACAATGTTTATTAAATATATCCACATATGAATGTGCATAAATTTCAAAAAGGGGCATTTGTTGTCAAAGAAATTTCGACCAAATACAAACCACCACATCATCATGACCAAAGTCAATTATATCAGATTCTGGGTCAATTTAAGATTATTGTATCCCTAAATTAAATTGTGTCTCAAAATTTAAGTTTGGAGACAAGCAAATGGCTAACTAGAAAATGTCACATGTCTTCAATCTAACCATTGGATCACAATAGCGAGCTTATCAACTTCAACAGCAATAAAACCTGGTCCGCGATTGGTAAATTTGGTCAAAGTTTTGCTTGGACTTTAAATCATAAATGGGATCAAGCCGAGTAAATAAAATTACTCGAGTCCAAAATTTGACCCATTTAAAGCCCACAATTGAATTAAATTTCTTCGAAAATCTTGTCGAACACCCATTTCTCATTTTGACTTTTACCCATTAGTAAGTCTTTTAATTGGCAAACTTAAAGATGAATTTTTTTTTAAAGAAGAAATTGAAGGCAGTTGAATACACTCATAAAAGAAGAAAATGTGTGCAATTTATTTCTTCAAGGCAATTTGGTTTGGCCCATTAAGTACTTAGGACAACATCTTTAACTGTATATATATGTGTGTTTAACAATGATCAAGTAGGCTGCAATTAAAAAGAAAATTTGGCAGAAGAAGTGAAGTGTCGAGAGCCTTTGAAGAAGAAACAGTCGAGAGCCTCCTGAAGAAGTGAAGTGTCGAGAGCTTTTTCAGCGTTTTATTGTGGCAGCGAGTATATTATTGAGAAAATCTTCTATTGTTTATTTCAAGATATTGAATCATGGTATTTGGATTCAAATAGTTCGTGTTGAGCTATTTGAGAGAGATTTATAGCGTGAGTTTGAGTTTTTTTACAATCCCCATCATAGTAAATCTACAGTTGTAAAAAAAGATTGGATGTAGTCTCGAGTTTGGAGCGAATTAGTATATTTTTCAGTGTCATTCTCTTTTTCCCTTATCCATTTCATTTACAATTTTATGATCGTTTACTTATTTGGGTCGAATCTGTGAGGTAGGAGTTTAGACATAAATTGTTTATTCCGTATTTAATATTTGGAAAAATATTTTAAATGACAAAATTGTTGAAAATATTTACAAATAATAACAAAATATAGTGGTCTATCGCACTCGATAGACTACTATCTACGTCTATCAGAACACAGATTTTACGCGACTACTATCTGTGTCTATCAAGACACAGATAATAGTCTATCATGGATAGACAATAAAATTTTGCTATATTTGTAAATATTTTGGTTTTTTTTCTATATTTGAAAAGAATCTTTTATATTTATATCTAGTATAAATTCCCAACAAGATCATTCAATATATTCTCCCTAAGAAAACACAAAGGTTAGAAAAACAGAGTAAAGAAAGTTGTCTATTGATTAAGAGACTGCGATTGAAAAGAAGGGGTTCTCCAAGCATTGGATTTATCTACAATCAAGATCTTGTAATGGGTATATGGATGCCCTAGTTTATTGTATTTACATACTTACCATTCTCACTTCTCTTTATGTGCAACCTACTAGAGTTTTAGTTCAAGTGGGAGTTGTTGAGTTTTATGCCCTAAAACTCATAGATTATAAATGTAATTATTTAACCGTCATTAAATCATTAATAAAGAGTTATTGATGTGTTACTTCAATAAGCGTTATTGATTGTTTTTGTTTGTTTCGTCTTAATAACCCAAAATCCAATAAACTAACATCCTAGGTTGTTTTATGAGTCTTGAACTGTATGTGGGGACATATGGAGATCAATGTTCAAGATACATTCAAAACGGTCTATAGTATAGGGATAAGGTTAGGTACCTTATCCTTGTGACACTATAGATACGACCTACTTTGTATTTGATACAAACGCAATGATGGGGTTATTCTATGCAATGAGTTTGCATAAAAGCGGACCACGGAATAGTAATCACTAGATGTAACTCCGTTGAGTAGTTAGATTTCTATTTCAATAGGATGACCTAAGCAACTTAGTCTTAATCCTAAGTATTTTATGAACTCCTGTCCACGAGGGATTGTCCTTTGATTTGTATGGGTGAGAGTGGTCGTTTGCCGACTCAGTATGCCTACCATCTTAGGAACAAGACCAAGTGGGGAACTAGGGACATAATTATGCAAGATGGAATTCACTCATTTCCATTTTTAGAGTAAATAGATAAGTGTTCCCTTAAGTGGCGTCTCTAGGATTTGAACAATGGGCCCTACCTTCTCACTGGCCTGAGAAGGGTTTCTGTTTAATGGTTGGATCATAAACAGATTGTTTATTAGAGGAGCACTGATACTTAACGATTTAGAAGTAACCTAGGGGTAAAACGATAATTTAACCCAGCTGGTGTTACGAACACTTGTGAATGACTAATTTGCTATTATTGATCCATATCCATGGACACAGAAATATATCTACAGTGAGAATAGTGCAGCTGTGGGTCTTTAGTGAGTGTACCCACGGTTAACGAATATTGATTAATGTGGTTAATGAGTTTAACCGATTAACCTCATATCGTTGGAACTTCTGATCTATAGGTCCATAAGGTCCCCTTATTAGCTCACAACGGACCAACAAGGATTAACTATGTTGAAAGAAAATTTTGAAATGTTCAAATTTATGAGGGAAAATATTAATTGTATTGGATACAATTAATTGCATGATTTATTATAAATTTTATTTGAATGTGATTCAAATTATAACTTTATAATATGGAGAATTAATTTATTTGAATATGATTCAAATAATTAATTATTTATTTGGACAAAATCCATATAAATAAATAGAGGGAGAATTAATTAATTAATTAAAATTGGATTCAAATAATTAATTATTTAATTTGGATGAGATCCAAATTAAAGATTTTGCAAAAAATAAATAAAAAGAGAATTAATTAATTGATTTGAATTGGATTCAAATAATTAATTATTTAATTTGGATGAGATCCAAATTAAAAATTCTGCAAAAGTTAATATTTAAATAAGATTTAGATATTCTAAACCATTTAATATGAGATATTATTTGGGTAGATATTTATTAATATTGGATATTATTAAATATTTAATTTAAAATCTCTACAAAGGGGTTATCCTAATAGGATTAGGAGTAACCCATAGTGTTCTATAAATAGGACCCTTGGGAGCCTTCCTAGAACACACTTTCTAAGAGAATAATCTCTACGATTACTCTAAAAATTTTCCTCTACTAATGCTTCCAGAATTTCTTCTTCTCATTCTTTAAAAGAAGCGGTTCCCACAAACCGAATTCTTGCCAGAGTCATAGCAAGGAAGATCTCTTGGAAAAGGAAAACTACATGGAGAAGACTATAGGTTCAAGAATTATAGATTGGCAAATGTATGATGCTTAACCTTTTTCTTTACTTTTTGTATTTTTAATTCTTTCAATAAATCAAAGAACACGATCATACACTTCCTCCAGGATTCAATTCCCTTCATATCTGACTAGATTCTAGCTAACGAGAAGGAAGAAACAGAGCTTTTGAAAACTAGAAGAAATCGAAGAGAATCAAAGAGAATCTTAAGAAATTGAAGAAATCGAAATGGACAATTGATGAGTGTTGGGAGTGGTTTCAAGTAAAAACTTATTCAATTTTTCCCATATTGTTAGCATTAAAGTCATTTATTTCGTAGACATTAGTATATTGACTAAAACCTATCAATCTTTCATCTTAGAACTGTTTAGGGGCATTGGATGACACCTACATTAAAGTGAATGTAGGTGTTACAGATCGCCCAAGGTATAGGACAAGAAAATGTGAGATAGCAACCAATGTGCTAGGGGTATGCTCTAAAGATGGAGAGTTTATCTATGTCCACCCTAGGTGGGAAGATTCTGCAGCTAATTCTAGAGTTTTAAGGGATGCAATCTCAAGGCCCAATGACTTGAATGTTCTTAAGTGTCACACCCCCTCCCAGATTACACTTTATGACCTGAGAGGAGATGTGAGAACAACAAACATCACCCCTTTAGCTGACGATAATCGATACGAGGTAGTGGGTACTTATTACATATTGTTACCTTATTTAGCTAACGGTAATCAATACATAACCTAA

mRNA sequence

ATGGCTGATGTTCAATTTTCAAAGCCTACCAAAGAAAGTGCGGTTAAGTTTGAATTGCATTTGGGTGCCAATCTCAACTTAATTTATAGACAGTACGAAATAGATACGAACTGTTTAGGGGCATTGGATGACACCTACATTAAAGTGAATGTAGGTGTTACAGATCGCCCAAGGTATAGGACAAGAAAATGTGAGATAGCAACCAATGTGCTAGGGGTATGCTCTAAAGATGGAGAGTTTATCTATGTCCACCCTAGGTGGGAAGATTCTGCAGCTAATTCTAGAGTTTTAAGGGATGCAATCTCAAGGCCCAATGACTTGAATGTTCTTAAGTGTCACACCCCCTCCCAGATTACACTTTATGACCTGAGAGGAGATGTGAGAACAACAAACATCACCCCTTTAGCTGACGATAATCGATACGAGGTAGTGGGTACTTATTACATATTGTTACCTTATTTAGCTAACGGTAATCAATACATAACCTAA

Coding sequence (CDS)

ATGGCTGATGTTCAATTTTCAAAGCCTACCAAAGAAAGTGCGGTTAAGTTTGAATTGCATTTGGGTGCCAATCTCAACTTAATTTATAGACAGTACGAAATAGATACGAACTGTTTAGGGGCATTGGATGACACCTACATTAAAGTGAATGTAGGTGTTACAGATCGCCCAAGGTATAGGACAAGAAAATGTGAGATAGCAACCAATGTGCTAGGGGTATGCTCTAAAGATGGAGAGTTTATCTATGTCCACCCTAGGTGGGAAGATTCTGCAGCTAATTCTAGAGTTTTAAGGGATGCAATCTCAAGGCCCAATGACTTGAATGTTCTTAAGTGTCACACCCCCTCCCAGATTACACTTTATGACCTGAGAGGAGATGTGAGAACAACAAACATCACCCCTTTAGCTGACGATAATCGATACGAGGTAGTGGGTACTTATTACATATTGTTACCTTATTTAGCTAACGGTAATCAATACATAACCTAA

Protein sequence

MADVQFSKPTKESAVKFELHLGANLNLIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLKCHTPSQITLYDLRGDVRTTNITPLADDNRYEVVGTYYILLPYLANGNQYIT
Homology
[Close]
BLAST of CmUC08G144090 vs. NCBI nr
Match: XP_038880502.1 (uncharacterized protein LOC120072165 [Benincasa hispida])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0 

Query: 20  HLGANLNLIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGE 79
           H  + LN++ R +E   +CLGALD TYIKVNV  TDRPRYR RK EI TNVLGV   +G+
Sbjct: 61  HFNSVLNVVLRLHE---DCLGALDGTYIKVNVNATDRPRYRMRKGEITTNVLGVYDTNGD 120

Query: 80  FIYVHPRWEDSAANSRVLRDAISRPNDLNVLK 112
           F++V P WEDS A+SRVL DAISRPN L VLK
Sbjct: 121 FVFVLPGWEDSTADSRVLTDAISRPNGLEVLK 149

[Close]
BLAST of CmUC08G144090 vs. NCBI nr
Match: TYK19823.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 4.9e-23
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 0 

Query: 37  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRV 96
           NC+GALD TYIKVNV   DRPRYRTRK E+ATN LGVC   G+F+++   WE SAANSR+
Sbjct: 60  NCIGALDGTYIKVNVSAVDRPRYRTRKGEVATNFLGVCDTKGDFVFIFVSWEGSAANSRI 119

Query: 97  LRDAISRPNDLNVLKCHTPSQITLYDLRGDVR 129
           LRDA+SRPN L VLK     +I  + L G  R
Sbjct: 120 LRDALSRPNSLKVLK----GEIYFWTLTGGQR 147

[Close]
BLAST of CmUC08G144090 vs. NCBI nr
Match: KAA0062571.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-23
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 0 

Query: 12  ESAVKFELHLGANLN-LIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNV 71
           E  +K  + +  N N   ++ +E+D NCLGALD TYIKVNV  TDRP +RTRK EIATNV
Sbjct: 76  EELIKRPVPMTNNCNDQCWKCFEVDMNCLGALDGTYIKVNVPETDRPTFRTRKGEIATNV 135

Query: 72  LGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK 112
           LGVC   G+F+YV   WE SAA+SR+LRDA+SR N L V K
Sbjct: 136 LGVCDMKGDFVYVLVGWEGSAADSRILRDALSRENGLQVPK 176

[Close]
BLAST of CmUC08G144090 vs. NCBI nr
Match: XP_038875111.1 (uncharacterized protein LOC120067643 [Benincasa hispida])

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-22
Identity = 56/75 (74.67%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 37  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRV 96
           NCLGALDDTYIKVNV   DR  YRTRK EIATNVL +CS   EFI+V PRWE S ANSRV
Sbjct: 97  NCLGALDDTYIKVNVSAVDRTHYRTRKGEIATNVLAICSPTAEFIFVLPRWERSVANSRV 156

Query: 97  LRDAISRPNDLNVLK 112
           LRDAISRP+ L V K
Sbjct: 157 LRDAISRPHGLKVSK 171

[Close]
BLAST of CmUC08G144090 vs. NCBI nr
Match: XP_031267081.1 (uncharacterized protein LOC116125509 [Pistacia vera])

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-22
Identity = 55/73 (75.34%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 37  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRV 96
           NCLGALD TYI+V+V  +D+PRYRTRK EIATNVLGVCS D +FIYV PRWE SA + RV
Sbjct: 107 NCLGALDGTYIRVHVDASDKPRYRTRKGEIATNVLGVCSPDMQFIYVLPRWEGSAIDGRV 166

Query: 97  LRDAISRPNDLNV 110
           LRDAISR NDL V
Sbjct: 167 LRDAISRRNDLKV 179

[Close]
BLAST of CmUC08G144090 vs. ExPASy TrEMBL
Match: A0A5D3D8H4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00220 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.4e-23
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 0 

Query: 37  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRV 96
           NC+GALD TYIKVNV   DRPRYRTRK E+ATN LGVC   G+F+++   WE SAANSR+
Sbjct: 60  NCIGALDGTYIKVNVSAVDRPRYRTRKGEVATNFLGVCDTKGDFVFIFVSWEGSAANSRI 119

Query: 97  LRDAISRPNDLNVLKCHTPSQITLYDLRGDVR 129
           LRDA+SRPN L VLK     +I  + L G  R
Sbjct: 120 LRDALSRPNSLKVLK----GEIYFWTLTGGQR 147

[Close]
BLAST of CmUC08G144090 vs. ExPASy TrEMBL
Match: A0A5A7VA89 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00590 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 0 

Query: 12  ESAVKFELHLGANLN-LIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNV 71
           E  +K  + +  N N   ++ +E+D NCLGALD TYIKVNV  TDRP +RTRK EIATNV
Sbjct: 76  EELIKRPVPMTNNCNDQCWKCFEVDMNCLGALDGTYIKVNVPETDRPTFRTRKGEIATNV 135

Query: 72  LGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK 112
           LGVC   G+F+YV   WE SAA+SR+LRDA+SR N L V K
Sbjct: 136 LGVCDMKGDFVYVLVGWEGSAADSRILRDALSRENGLQVPK 176

[Close]
BLAST of CmUC08G144090 vs. ExPASy TrEMBL
Match: A0A6P4AQT8 (uncharacterized protein LOC107434013 OS=Ziziphus jujuba OX=326968 GN=LOC107434013 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 0 

Query: 31  QYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDS 90
           +++I  NCLGALD TYIKVNV   D+PRYRTRK EIATNVLGVC+ + EFI+V P WE S
Sbjct: 76  RWKISKNCLGALDGTYIKVNVPEIDKPRYRTRKGEIATNVLGVCNPNMEFIFVLPGWEGS 135

Query: 91  AANSRVLRDAISRPNDLNV 110
           A++SRVLRDA+SRPN L V
Sbjct: 136 ASDSRVLRDALSRPNGLKV 154

[Close]
BLAST of CmUC08G144090 vs. ExPASy TrEMBL
Match: A0A6P6GFS0 (protein ALP1-like OS=Ziziphus jujuba OX=326968 GN=LOC112492814 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 26  NLIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHP 85
           N +  ++++  NCLGALD TYIKVNV   D+PRYRTRK EIATNVLGVC+ + EFI+V P
Sbjct: 161 NCLDDRWKVFKNCLGALDGTYIKVNVPEIDKPRYRTRKGEIATNVLGVCNPNMEFIFVLP 220

Query: 86  RWEDSAANSRVLRDAISRPNDLNV 110
            WE SA++SRVLRDA+SRPN L V
Sbjct: 221 GWEGSASDSRVLRDALSRPNGLRV 244

[Close]
BLAST of CmUC08G144090 vs. ExPASy TrEMBL
Match: A0A5A7TNY6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001360 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 37  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRV 96
           NCLGALD TYIKVNV  +DR RYRTRK E+ATNVLGVC + G+F+YV   WE SAA+SR+
Sbjct: 97  NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDRKGDFVYVLAGWEGSAADSRI 156

Query: 97  LRDAISRPNDLNVLK 112
           LRDA+SRPN+L V K
Sbjct: 157 LRDALSRPNELKVPK 171

[Close]
BLAST of CmUC08G144090 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-13
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 30  RQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWED 89
           R Y    +C+GA+DDT+I   V     P +R RK +I+ N+L  C+ D EF+YV   WE 
Sbjct: 17  RLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEG 76

Query: 90  SAANSRVLRDAISR 104
           SA +S+VL DA++R
Sbjct: 77  SAHDSKVLNDALTR 90

The following BLAST results are available for this feature:
BLAST of CmUC08G144090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880502.11.3e-2364.13uncharacterized protein LOC120072165 [Benincasa hispida][more]
TYK19823.14.9e-2360.87putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0062571.18.4e-2358.42retrotransposon protein [Cucumis melo var. makuwa][more]
XP_038875111.11.9e-2274.67uncharacterized protein LOC120067643 [Benincasa hispida][more]
XP_031267081.13.2e-2275.34uncharacterized protein LOC116125509 [Pistacia vera][more]
BLAST of CmUC08G144090 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC08G144090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D8H42.4e-2360.87Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7VA894.1e-2358.42Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6P4AQT81.5e-2269.62uncharacterized protein LOC107434013 OS=Ziziphus jujuba OX=326968 GN=LOC10743401... [more]
A0A6P6GFS02.0e-2265.48protein ALP1-like OS=Ziziphus jujuba OX=326968 GN=LOC112492814 PE=3 SV=1[more]
A0A5A7TNY62.0e-2270.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CmUC08G144090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G28950.18.4e-1344.59unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 37..110
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 37..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC08G144090.1CmUC08G144090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding