CmUC08G143550 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G143550
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr08: 1801463 .. 1801789 (-)
RNA-Seq Expression	CmUC08G143550
Synteny	CmUC08G143550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGTCCTGAATTTGCCGAGACTATTCCAGTGAGTCCTCCTATGGTGAACAAAAAGATGGACCCTACAGCAGATACCATGGGTGTTTTGTATTGTATCAAACCCGCCCCACATGGTAGCAATCCAACTAAAGATTTTTATTCTAGTGGGGGTTGCTATGATCATGGTAGCAACGTTGAAGTAGGCACGGGTATCAACGTCAAAGCCCACAGTAAACATATGATGAGCCCAAACAAGAAATCTAAGAACACCGATACTGATCATGGCATAAACCAGCCTGGATACCTGAAAACCAATTTTCTCGAAAAAGTTGAAACGATATGA

mRNA sequence

ATGTCTAGTCCTGAATTTGCCGAGACTATTCCAGTGAGTCCTCCTATGGTGAACAAAAAGATGGACCCTACAGCAGATACCATGGGTGTTTTGTATTGTATCAAACCCGCCCCACATGGTAGCAATCCAACTAAAGATTTTTATTCTAGTGGGGGTTGCTATGATCATGGTAGCAACGTTGAAGTAGGCACGGGTATCAACGTCAAAGCCCACAGTAAACATATGATGAGCCCAAACAAGAAATCTAAGAACACCGATACTGATCATGGCATAAACCAGCCTGGATACCTGAAAACCAATTTTCTCGAAAAAGTTGAAACGATATGA

Coding sequence (CDS)

ATGTCTAGTCCTGAATTTGCCGAGACTATTCCAGTGAGTCCTCCTATGGTGAACAAAAAGATGGACCCTACAGCAGATACCATGGGTGTTTTGTATTGTATCAAACCCGCCCCACATGGTAGCAATCCAACTAAAGATTTTTATTCTAGTGGGGGTTGCTATGATCATGGTAGCAACGTTGAAGTAGGCACGGGTATCAACGTCAAAGCCCACAGTAAACATATGATGAGCCCAAACAAGAAATCTAAGAACACCGATACTGATCATGGCATAAACCAGCCTGGATACCTGAAAACCAATTTTCTCGAAAAAGTTGAAACGATATGA

Protein sequence

MSSPEFAETIPVSPPMVNKKMDPTADTMGVLYCIKPAPHGSNPTKDFYSSGGCYDHGSNVEVGTGINVKAHSKHMMSPNKKSKNTDTDHGINQPGYLKTNFLEKVETI

Homology

[Close]

BLAST of CmUC08G143550 vs. NCBI nr
Match: KAF3635473.1 (ATP synthase subunit alpha, chloroplastic [Capsicum annuum])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDPTADTMGVLYCIKPAPHGSNPTKDFYSSGGCYDHGSNV 60
          MSSPEFA TIPVSPPMVNKKM+PT + MGVLYCI+P PHGS+PTKDF SSG  YDHGS  
Sbjct: 1  MSSPEFARTIPVSPPMVNKKMNPTTNNMGVLYCIEPLPHGSDPTKDFDSSGDNYDHGSCG 60

Query: 61 EVGT 65
          EVGT
Sbjct: 61 EVGT 64

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BLAST of CmUC08G143550 vs. NCBI nr
Match: GFC35842.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDPTADTMGVLYCIK-PAPHGSNPTKDFYSSGGCYDHGS 59
          MSSPEFAETIPVSPPMVNK MDPTA+ MGVLYCIK P PHGS+PTKDF SSG  YDHGS
Sbjct: 1  MSSPEFAETIPVSPPMVNKNMDPTANNMGVLYCIKPPTPHGSDPTKDFDSSGDSYDHGS 59

[Close]

BLAST of CmUC08G143550 vs. NCBI nr
Match: KAF5767741.1 (hypothetical protein HanXRQr2_Chr14g0628261 [Helianthus annuus])

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-09
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDPTADTMGVLYCIKPAPH 40
          MSSPEFA TIPVSPPMVNKKMDPTA+ MGVLYCI+P PH
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMDPTANNMGVLYCIEP-PH 38

[Close]

BLAST of CmUC08G143550 vs. NCBI nr
Match: KAF1856899.1 (hypothetical protein Lal_00001930 [Lupinus albus])

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-08
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDPTADTMGVLYCIKPAPH 40
          MSSPEFA TIPVSPPMVNKKM+PTA+ MGVLYCI+P PH
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMNPTANNMGVLYCIEP-PH 38

[Close]

BLAST of CmUC08G143550 vs. ExPASy TrEMBL
Match: M8AUQ9 (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_31525 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.4e-09
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDPTADTMGVLYCIKPAPH 40
          MSSPEFA TIPVSPPMVNKKM+PTA+ MGVLYCI+P PH
Sbjct: 1  MSSPEFARTIPVSPPMVNKKMNPTANNMGVLYCIEP-PH 38

[Close]

BLAST of CmUC08G143550 vs. ExPASy TrEMBL
Match: A0A6A5L812 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001930 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDPTADTMGVLYCIKPAPH 40
          MSSPEFA TIPVSPPMVNKKM+PTA+ MGVLYCI+P PH
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMNPTANNMGVLYCIEP-PH 38

The following BLAST results are available for this feature:

BLAST of CmUC08G143550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3635473.1	1.3e-19	79.69	ATP synthase subunit alpha, chloroplastic [Capsicum annuum]	[more]
GFC35842.1	1.9e-18	84.75	hypothetical protein [Tanacetum cinerariifolium]	[more]
KAF5767741.1	7.8e-09	87.18	hypothetical protein HanXRQr2_Chr14g0628261 [Helianthus annuus]	[more]
KAF1856899.1	3.0e-08	84.62	hypothetical protein Lal_00001930 [Lupinus albus]	[more]

BLAST of CmUC08G143550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G143550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M8AUQ9	8.4e-09	84.62	Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_31525 PE=4 SV=1	[more]
A0A6A5L812	1.4e-08	84.62	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001930 PE=4 SV=1	[more]

BLAST of CmUC08G143550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G143550.1	CmUC08G143550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane