CmUC08G142800 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G142800
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Gag/pol protein
Location	CmU531Chr08: 314940 .. 315437 (+)
RNA-Seq Expression	CmUC08G142800
Synteny	CmUC08G142800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTGGTTATAAATGATCCACGGTTTGTCTTAATGGAGGAGTGTCCTCCTATCCCCACTCATAATGCATCCCAATCTGTTAGAGATGCATATGACCATTGGACAAAGGCCAATGGCAAGGCCCGAGTCAATATCTTGGCGAGTCTGTCTGACATACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTCCAGGAAATGTTTGGACAACCGTCCTCACAGATCCGGCACGAGGCCCTTAAGTACGTTTATAATGCACGTATGAAGGAAGGCCAATCGGTGAGAGAACATGTTCTCAACCTAAGGGTCAAATTCAACATTGCTGAAATGAACGGTGTAGTCATTGACGAGCAGAGTCAAGTGTTTTTTATTCTAGAATCTCTTCTGAAGAGCTTCTTGCAATTCCATAGCAATACGGTTATGAATAAAATTATGTACACCATGACAACCCTCCTAAATGAGTTACAGACTTATTAG

mRNA sequence

ATGATTCTGGTTATAAATGATCCACGGTTTGTCTTAATGGAGGAGTGTCCTCCTATCCCCACTCATAATGCATCCCAATCTGTTAGAGATGCATATGACCATTGGACAAAGGCCAATGGCAAGGCCCGAGTCAATATCTTGGCGAGTCTGTCTGACATACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTCCAGGAAATGTTTGGACAACCGTCCTCACAGATCCGGCACGAGGCCCTTAAGTACGTTTATAATGCACGTATGAAGGAAGGCCAATCGGTGAGAGAACATGTTCTCAACCTAAGGGTCAAATTCAACATTGCTGAAATGAACGGTGTAGTCATTGACGAGCAGAGTCAAGTGTTTTTTATTCTAGAATCTCTTCTGAAGAGCTTCTTGCAATTCCATAGCAATACGGTTATGAATAAAATTATGTACACCATGACAACCCTCCTAAATGAGTTACAGACTTATTAG

Coding sequence (CDS)

ATGATTCTGGTTATAAATGATCCACGGTTTGTCTTAATGGAGGAGTGTCCTCCTATCCCCACTCATAATGCATCCCAATCTGTTAGAGATGCATATGACCATTGGACAAAGGCCAATGGCAAGGCCCGAGTCAATATCTTGGCGAGTCTGTCTGACATACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTCCAGGAAATGTTTGGACAACCGTCCTCACAGATCCGGCACGAGGCCCTTAAGTACGTTTATAATGCACGTATGAAGGAAGGCCAATCGGTGAGAGAACATGTTCTCAACCTAAGGGTCAAATTCAACATTGCTGAAATGAACGGTGTAGTCATTGACGAGCAGAGTCAAGTGTTTTTTATTCTAGAATCTCTTCTGAAGAGCTTCTTGCAATTCCATAGCAATACGGTTATGAATAAAATTATGTACACCATGACAACCCTCCTAAATGAGTTACAGACTTATTAG

Protein sequence

MILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEAMMNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGVVIDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY

Homology

[Close]

BLAST of CmUC08G142800 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 124/165 (75.15%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEA 60
           MILVI D RFVLMEECPP PT NASQSV+DAYDHWTKAN KA + +LASLSDIL+KKHE 
Sbjct: 28  MILVIADLRFVLMEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEI 87

Query: 61  MMNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGV 120
           M+ ARQIM+SL+EMFGQPS QI+ EA+KYVYNARMKEGQSVREHVL + V FN+AEMN  
Sbjct: 88  MVTARQIMDSLREMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKA 147

Query: 121 VIDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           + DE+SQV +IL+SL KSFLQF SN  MNKI Y MTTLL ELQT+
Sbjct: 148 IFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEYNMTTLLKELQTF 192

[Close]

BLAST of CmUC08G142800 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 124/165 (75.15%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEA 60
           MILVI D RFVLMEECPP PT NASQSV+DAYDHWTKAN KA + +LASLSDIL+KKHE 
Sbjct: 28  MILVIADLRFVLMEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEI 87

Query: 61  MMNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGV 120
           M+ ARQIM+SL+EMFGQPS QI+ EA+KYVYNARMKEGQSVREHVL + V FN+AEMN  
Sbjct: 88  MVTARQIMDSLREMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKA 147

Query: 121 VIDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           + DE+SQV +IL+SL KSFLQF SN  MNKI Y MTTLL ELQT+
Sbjct: 148 IFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEYNMTTLLKELQTF 192

[Close]

BLAST of CmUC08G142800 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 6.9e-57
Identity = 116/164 (70.73%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 2   ILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEAM 61
           +L+I+D RFVL+EECP +P  NA+Q+VR+ Y+ W KAN KAR  ILASLS++L KKHE+M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  MNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGVV 121
           + AR+IM+SLQEMFGQ S QI+H+ALKY+YNARM EG SVREHVLN+ V FN+AEMNG V
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAV 148

Query: 122 IDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           IDE SQV FILESL +SFLQF SN VMNKI YT+TTLLNELQT+
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of CmUC08G142800 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 2.0e-56
Identity = 115/164 (70.12%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 2   ILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEAM 61
           +L+I+D RFVL+EECP +P  NA+++VR+ Y+ W KAN KAR  ILASLS++L KKHE+M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  MNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGVV 121
           + AR+IM+SLQEMFGQ S QI+H+ALKY+YNARM EG SVREHVLN+ V FN+AEMNG V
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           IDE SQV FILESL +SFLQF SN VMNKI YT+TTLLNELQT+
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of CmUC08G142800 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 2.0e-56
Identity = 115/164 (70.12%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 2   ILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEAM 61
           +L+I+D RFVL+EECP +P  NA+++VR+ Y+ W KAN KAR  ILASLS++L KKHE+M
Sbjct: 28  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 87

Query: 62  MNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGVV 121
           + AR+IM+SLQEMFGQ S QI+H+ALKY+YNARM EG SVREHVLN+ V FN+AEMNG V
Sbjct: 88  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 147

Query: 122 IDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           IDE SQV FILESL +SFLQF SN VMNKI YT+TTLLNELQT+
Sbjct: 148 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 191

[Close]

BLAST of CmUC08G142800 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 124/165 (75.15%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEA 60
           MILVI D RFVLMEECPP PT NASQSV+DAYDHWTKAN KA + +LASLSDIL+KKHE 
Sbjct: 28  MILVIADLRFVLMEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEI 87

Query: 61  MMNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGV 120
           M+ ARQIM+SL+EMFGQPS QI+ EA+KYVYNARMKEGQSVREHVL + V FN+AEMN  
Sbjct: 88  MVTARQIMDSLREMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKA 147

Query: 121 VIDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           + DE+SQV +IL+SL KSFLQF SN  MNKI Y MTTLL ELQT+
Sbjct: 148 IFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEYNMTTLLKELQTF 192

[Close]

BLAST of CmUC08G142800 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 124/165 (75.15%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEA 60
           MILVI D RFVLMEECPP PT NASQSV+DAYDHWTKAN KA + +LASLSDIL+KKHE 
Sbjct: 28  MILVIADLRFVLMEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEI 87

Query: 61  MMNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGV 120
           M+ ARQIM+SL+EMFGQPS QI+ EA+KYVYNARMKEGQSVREHVL + V FN+AEMN  
Sbjct: 88  MVTARQIMDSLREMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKA 147

Query: 121 VIDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           + DE+SQV +IL+SL KSFLQF SN  MNKI Y MTTLL ELQT+
Sbjct: 148 IFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEYNMTTLLKELQTF 192

[Close]

BLAST of CmUC08G142800 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.3e-57
Identity = 116/164 (70.73%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 2   ILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEAM 61
           +L+I+D RFVL+EECP +P  NA+Q+VR+ Y+ W KAN KAR  ILASLS++L KKHE+M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  MNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGVV 121
           + AR+IM+SLQEMFGQ S QI+H+ALKY+YNARM EG SVREHVLN+ V FN+AEMNG V
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAV 148

Query: 122 IDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           IDE SQV FILESL +SFLQF SN VMNKI YT+TTLLNELQT+
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of CmUC08G142800 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 9.7e-57
Identity = 115/164 (70.12%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 2   ILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEAM 61
           +L+I+D RFVL+EECP +P  NA+++VR+ Y+ W KAN KAR  ILASLS++L KKHE+M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  MNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGVV 121
           + AR+IM+SLQEMFGQ S QI+H+ALKY+YNARM EG SVREHVLN+ V FN+AEMNG V
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           IDE SQV FILESL +SFLQF SN VMNKI YT+TTLLNELQT+
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of CmUC08G142800 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 9.7e-57
Identity = 115/164 (70.12%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 2   ILVINDPRFVLMEECPPIPTHNASQSVRDAYDHWTKANGKARVNILASLSDILNKKHEAM 61
           +L+I+D RFVL+EECP +P  NA+++VR+ Y+ W KAN KAR  ILASLS++L KKHE+M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  MNARQIMESLQEMFGQPSSQIRHEALKYVYNARMKEGQSVREHVLNLRVKFNIAEMNGVV 121
           + AR+IM+SLQEMFGQ S QI+H+ALKY+YNARM EG SVREHVLN+ V FN+AEMNG V
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVFFILESLLKSFLQFHSNTVMNKIMYTMTTLLNELQTY 166
           IDE SQV FILESL +SFLQF SN VMNKI YT+TTLLNELQT+
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

The following BLAST results are available for this feature:

BLAST of CmUC08G142800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	3.3e-59	75.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	3.3e-59	75.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	6.9e-57	70.73	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	2.0e-56	70.12	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.0e-56	70.12	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CmUC08G142800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G142800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	1.6e-59	75.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	1.6e-59	75.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5A7V6N0	3.3e-57	70.73	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016...	[more]
A0A5A7SMH8	9.7e-57	70.12	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	9.7e-57	70.12	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]

BLAST of CmUC08G142800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 35..163 e-value: 3.3E-14 score: 52.8
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 23..163
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 23..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G142800.1	CmUC08G142800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding