CmUC06G126140 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G126140
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	mediator of RNA polymerase II transcription subunit 30
Location	CmU531Chr06: 29362086 .. 29363821 (+)
RNA-Seq Expression	CmUC06G126140
Synteny	CmUC06G126140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTTGCCCGCGCAGGTTCGAACCCTACTGTCGATGATTATTTTAATTTTTTAATTTTATTTTATTTTAATTTTTCCCCCTTTTTCTGGGTTTCTCGATTACAAATTAGGGCTAGGGTTTCATGAACACCACAAGTGTGATTGGAAATTGGAATTGGGAATTTAGAAGATTTCGAACGCTCTCTTTACAAATTTGGTGGTTTGTCGATTGCAGTAGCAACACAGGAGCATCTGTTTTTTCTTCTGGAAACATACAAATGGAAGAGAAACCCACTAATGTTTTGGCTCTTGCCCAGACAACTCAAGAGCTTGCAATGGACGGCATCAAGCATCTCGAGGAAACCATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTACAACGGCAACGACGGCTACTTCTGGTTTAACAATTGCCAGCCCTAATGGTCCATCTTCGCATTCCGCTAATGGAGTTGTAAACGGCGACGCAAGTTCCGAAAGCACTAGCCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCTGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAAATTACTGACTGATCTTCCAATTCTCTATCCAAGTTCATTAGCCAGTGTTTCTCATTTCGAATTTGCTTTTTATTTGGAAAGAATCGAGATCGATTCGGAGATATTGGGTTCCCCCAGGTTCTAAATGCTTTGTTGAAAACATGAAATGTTGGAACATAGAATTTTCGTACTCAATTTCAGACAAATGCCTAAAATTCTTCCTGAATTTAATAGATTACAGAGACTACAATGAACCTGGTTCTCATGTACGTCACTGCTGATTGATTCGTGGACTTACTCCTTGTAGAATTTGATAGATTGCTAACTGCATTGACTTTTTATCACTTGTATTAAGCGATTTTAAGCAGAGTTTTGTGTTTGTTGACAGGCAGAAGCATATGAATCGGGCACGAGTGGTCATGCATCGCCTGCAGATCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAGGGTATTTTCTTCAAGACTTTTAGATGTGCCCGAACACTTTCTTCATTGAAGGAACCAAATATTTCTGCGAATAATTTACTTATTAAGATTTTGGAGTCTACTTAGCTTCAACAACGCACGATGTAATGTTATTTTCAGACATATCTGTAGTAAAATATACTTAAAAGTTAAAATATATACAAATATTGATGAAACTAAAAAGGTAAGGTCTTTAAAGGTTTCAAGACAACTGTTGTATCTCAGTATTAATCTAAGGAAAGATTCTGAAATTAAATAGACAATAGAGAAAATCAAATATTGAAACTAATAACGTTATGGAGGATACAGTCATAATATATATTATACGATAATATGTTTCTGCCTTTGTCGTATCTTTATCTTTGTTAAGGTCCTAGAAATGACATTTTATTTTTCCTTCAACTACTCGTTCTTATAAGGGTCCTGTCTGCGGTTTCTTTGCAGGAACTTGTGATGAAGAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTCTGA

mRNA sequence

ATGAGTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTTGCCCGCGCAGTAGCAACACAGGAGCATCTGTTTTTTCTTCTGGAAACATACAAATGGAAGAGAAACCCACTAATGTTTTGGCTCTTGCCCAGACAACTCAAGAGCTTGCAATGGACGGCATCAAGCATCTCGAGGAAACCATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTACAACGGCAACGACGGCTACTTCTGGTTTAACAATTGCCAGCCCTAATGGTCCATCTTCGCATTCCGCTAATGGAGTTGTAAACGGCGACGCAAGTTCCGAAAGCACTAGCCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCTGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAAATTACTGACTGATCTTCCAATTCTCTATCCAAGTTCATTAGCCAGTGTTTCTCATTTCGAATTTGCTTTTTATTTGGAAAGAATCGAGATCGATTCGGAGATATTGGGTTCCCCCAGAGACTACAATGAACCTGGTTCTCATGCAGAAGCATATGAATCGGGCACGAGTGGTCATGCATCGCCTGCAGATCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAGGGAACTTGTGATGAAGAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTCTGA

Coding sequence (CDS)

ATGAGTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTTGCCCGCGCAGTAGCAACACAGGAGCATCTGTTTTTTCTTCTGGAAACATACAAATGGAAGAGAAACCCACTAATGTTTTGGCTCTTGCCCAGACAACTCAAGAGCTTGCAATGGACGGCATCAAGCATCTCGAGGAAACCATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTACAACGGCAACGACGGCTACTTCTGGTTTAACAATTGCCAGCCCTAATGGTCCATCTTCGCATTCCGCTAATGGAGTTGTAAACGGCGACGCAAGTTCCGAAAGCACTAGCCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCTGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAAATTACTGACTGATCTTCCAATTCTCTATCCAAGTTCATTAGCCAGTGTTTCTCATTTCGAATTTGCTTTTTATTTGGAAAGAATCGAGATCGATTCGGAGATATTGGGTTCCCCCAGAGACTACAATGAACCTGGTTCTCATGCAGAAGCATATGAATCGGGCACGAGTGGTCATGCATCGCCTGCAGATCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAGGGAACTTGTGATGAAGAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTCTGA

Protein sequence

MSRYVRVVKETDLKSVGLCPRSSNTGASVFSSGNIQMEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

Homology

[Close]

BLAST of CmUC06G126140 vs. NCBI nr
Match: XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 5.5e-86
Identity = 188/247 (76.11%), Postives = 195/247 (78.95%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           MEEK TNVLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
           TSGLTIASP+GPSSHSANGVVNGDASSESTSHHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIPNSQK                                              
Sbjct: 121 ALRAILAAIPNSQK---------------------------------------------- 180

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
              A+AYESGTSGHASPADQSEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVST
Sbjct: 181 ---AKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVST 198

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 241 WQSPCSV 198

[Close]

BLAST of CmUC06G126140 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa])

HSP 1 Score: 327.4 bits (838), Expect = 1.2e-85
Identity = 188/247 (76.11%), Postives = 194/247 (78.54%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           MEEK T VLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
           TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTD+SSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIPNSQK                                              
Sbjct: 121 ALRAILAAIPNSQK---------------------------------------------- 180

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
              A+AYESGTS HASPADQSEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVST
Sbjct: 181 ---AKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVST 198

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 241 WQSPCSV 198

[Close]

BLAST of CmUC06G126140 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324.3 bits (830), Expect = 1.0e-84
Identity = 184/247 (74.49%), Postives = 194/247 (78.54%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           MEEKPTNVL+L QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATT 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
           TSGLTIASPN PSSHS NGVVNGDASSEST+HHTDTSSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIPNSQK                                              
Sbjct: 121 ALRAILAAIPNSQK---------------------------------------------- 180

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
              A+A+ESGTSGHASPADQSEIDKLEQHLSNLR+EL++KNLHIKLLIDQLR+LVADVST
Sbjct: 181 ---AKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVST 198

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 241 WQSPCSV 198

[Close]

BLAST of CmUC06G126140 vs. NCBI nr
Match: XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida])

HSP 1 Score: 318.2 bits (814), Expect = 7.4e-83
Identity = 185/247 (74.90%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           MEEKPTNVLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+T TTA
Sbjct: 2   MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTVTTA 61

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
           TSGL IASPNGPSSHS NGVVNGDASSESTSHHTD+SSGGGSGSGGALEEARVRYKNSVL
Sbjct: 62  TSGLAIASPNGPSSHSVNGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 121

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIPNSQK                                              
Sbjct: 122 ALRAILAAIPNSQK---------------------------------------------- 181

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
              A AYESGTSG  SPADQSEIDKLEQHLS+LR+ELV+KNLHIKLLIDQLRDLVADVST
Sbjct: 182 ---ATAYESGTSG--SPADQSEIDKLEQHLSSLRKELVVKNLHIKLLIDQLRDLVADVST 197

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 242 WQSPCSV 197

[Close]

BLAST of CmUC06G126140 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])

HSP 1 Score: 300.8 bits (769), Expect = 1.2e-77
Identity = 172/247 (69.64%), Postives = 188/247 (76.11%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           ME+KPT++LAL QTTQELA++GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TAT+A
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
              L+IASPNGPS HS NGVVNGDASSEST+HH DTSSGGG+GSGGALEEARVRY NSVL
Sbjct: 61  ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIP+SQ                                               
Sbjct: 121 ALRAILAAIPSSQ----------------------------------------------- 180

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
             +A+AYESGTSGHASPADQSEIDKLEQHL NLR+ELV KNLH+KLLIDQLRDLVAD+ST
Sbjct: 181 --NAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADIST 195

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 241 WQSPCSV 195

[Close]

BLAST of CmUC06G126140 vs. ExPASy Swiss-Prot
Match: Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-37
Identity = 104/236 (44.07%), Postives = 139/236 (58.90%), Query Frame = 0


Query: 50  TTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPS 109
           TTQELAM+G K LEETIE+AFQI+ +MNDELCNP+LWST++T ++ AT+       NG +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATT----TGSNGSA 72

Query: 110 SHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEARVRYKNSVLALRAILAAIPN 169
             SA+      A+ + TSHH++++ GGG G  G   L+EA +RYKNSV +LRA+LAAIPN
Sbjct: 73  LVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPN 132

Query: 170 SQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGT 229
           SQK K                               SE+                     
Sbjct: 133 SQKAKA------------------------------SEM--------------------Q 189

Query: 230 SGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV 284
           +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Sbjct: 193 NGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQSPCSV 189

[Close]

BLAST of CmUC06G126140 vs. ExPASy TrEMBL
Match: A0A0A0LNW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.6e-86
Identity = 188/247 (76.11%), Postives = 195/247 (78.95%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           MEEK TNVLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
           TSGLTIASP+GPSSHSANGVVNGDASSESTSHHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIPNSQK                                              
Sbjct: 121 ALRAILAAIPNSQK---------------------------------------------- 180

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
              A+AYESGTSGHASPADQSEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVST
Sbjct: 181 ---AKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVST 198

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 241 WQSPCSV 198

[Close]

BLAST of CmUC06G126140 vs. ExPASy TrEMBL
Match: A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 5.9e-86
Identity = 188/247 (76.11%), Postives = 194/247 (78.54%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           MEEK T VLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
           TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTD+SSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIPNSQK                                              
Sbjct: 121 ALRAILAAIPNSQK---------------------------------------------- 180

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
              A+AYESGTS HASPADQSEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVST
Sbjct: 181 ---AKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVST 198

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 241 WQSPCSV 198

[Close]

BLAST of CmUC06G126140 vs. ExPASy TrEMBL
Match: A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 5.9e-86
Identity = 188/247 (76.11%), Postives = 194/247 (78.54%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           MEEK T VLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
           TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTD+SSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIPNSQK                                              
Sbjct: 121 ALRAILAAIPNSQK---------------------------------------------- 180

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
              A+AYESGTS HASPADQSEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVST
Sbjct: 181 ---AKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVST 198

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 241 WQSPCSV 198

[Close]

BLAST of CmUC06G126140 vs. ExPASy TrEMBL
Match: A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 5.0e-85
Identity = 184/247 (74.49%), Postives = 194/247 (78.54%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           MEEKPTNVL+L QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATT 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
           TSGLTIASPN PSSHS NGVVNGDASSEST+HHTDTSSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIPNSQK                                              
Sbjct: 121 ALRAILAAIPNSQK---------------------------------------------- 180

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
              A+A+ESGTSGHASPADQSEIDKLEQHLSNLR+EL++KNLHIKLLIDQLR+LVADVST
Sbjct: 181 ---AKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVST 198

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 241 WQSPCSV 198

[Close]

BLAST of CmUC06G126140 vs. ExPASy TrEMBL
Match: A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 5.0e-85
Identity = 184/247 (74.49%), Postives = 194/247 (78.54%), Query Frame = 0


Query: 37  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTA 96
           MEEKPTNVL+L QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATT 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 97  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVL 156
           TSGLTIASPN PSSHS NGVVNGDASSEST+HHTDTSSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 157 ALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEP 216
           ALRAILAAIPNSQK                                              
Sbjct: 121 ALRAILAAIPNSQK---------------------------------------------- 180

Query: 217 GSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVST 276
              A+A+ESGTSGHASPADQSEIDKLEQHLSNLR+EL++KNLHIKLLIDQLR+LVADVST
Sbjct: 181 ---AKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVST 198

Query: 277 WQSPCSV 284
           WQSPCSV
Sbjct: 241 WQSPCSV 198

[Close]

BLAST of CmUC06G126140 vs. TAIR 10
Match: AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-38
Identity = 104/236 (44.07%), Postives = 139/236 (58.90%), Query Frame = 0


Query: 50  TTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPS 109
           TTQELAM+G K LEETIE+AFQI+ +MNDELCNP+LWST++T ++ AT+       NG +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATT----TGSNGSA 72

Query: 110 SHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEARVRYKNSVLALRAILAAIPN 169
             SA+      A+ + TSHH++++ GGG G  G   L+EA +RYKNSV +LRA+LAAIPN
Sbjct: 73  LVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPN 132

Query: 170 SQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGT 229
           SQK K                               SE+                     
Sbjct: 133 SQKAKA------------------------------SEM--------------------Q 189

Query: 230 SGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV 284
           +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Sbjct: 193 NGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQSPCSV 189

The following BLAST results are available for this feature:

BLAST of CmUC06G126140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138044.1	5.5e-86	76.11	mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN634...	[more]
XP_008464424.1	1.2e-85	76.11	PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]...	[more]
XP_022921424.1	1.0e-84	74.49	mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_...	[more]
XP_038879540.1	7.4e-83	74.90	mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]	[more]
XP_022134927.1	1.2e-77	69.64	mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]	[more]

BLAST of CmUC06G126140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMV4	2.9e-37	44.07	Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O...	[more]

BLAST of CmUC06G126140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNW4	2.6e-86	76.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1	[more]
A0A5A7USU3	5.9e-86	76.11	Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. maku...	[more]
A0A1S3CMZ7	5.9e-86	76.11	mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JFZ2	5.0e-85	74.49	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E0F5	5.0e-85	74.49	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=...	[more]

BLAST of CmUC06G126140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63480.1	2.0e-38	44.07	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 239..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..139
None	No IPR available	PANTHER	PTHR36406:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 44..172
None	No IPR available	PANTHER	PTHR36406:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 220..283
IPR034568	Mediator of RNA polymerase II transcription subunit 30	PANTHER	PTHR36406	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 44..172
IPR034568	Mediator of RNA polymerase II transcription subunit 30	PANTHER	PTHR36406	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 220..283

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G126140.1	CmUC06G126140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016592	mediator complex