CmUC06G125780 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G125780
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr06: 29058238 .. 29058835 (-)
RNA-Seq Expression	CmUC06G125780
Synteny	CmUC06G125780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAATTGAAGAAGAAAATGAACATACCCAAGAAGATTAACGCGCAAATGGATGCTGAGTTCAACGAAGAGCTCATACATCTGACCAACATCGGCGGCATTTCCATGGGAATAAAGAAGCGTGGAAGTAGCCATAGGGTAACGGATGTAAACAGCGACAATCTCATTGCCTTTACGCGTCGGAAGCTTCCAGACATCGACATTTTCGCGGTGGGGAAAAGGGTCCAAGAGAAGAAGACCAGTGGGTTGGTCTGTGAGGAGTTTGTAAGAGGGTGGATTAGGAGGGAAGAAAGCGAATTTAGCAGCCATGGAAGAAGTAACCCCACCCATGAAGCTTCAGTGAGTGAGATTGGGGATTCAGAGAAGGTACTGGAAGTGGAAGATGGAAGGATTTTAGAGAAAAGAGAAGGGAAATTTACGCATTCCCTTGAGCGTTTGTAGTTCTTTTGCTTTGCTTTTTTGTTTTTCTTCTTTTGCTCAGCTTCCTTCTCCGAAAAGTATGTGTTATTATCTGTCTCGAGGCAAGGCTTTGAGAGAACAGAGGCAAGAGAAGAGAAGAGAAGAGAGAAGAAGACTTTGGAGTGAGAGAAAGTGA

mRNA sequence

ATGCAGGAATTGAAGAAGAAAATGAACATACCCAAGAAGATTAACGCGCAAATGGATGCTGAGTTCAACGAAGAGCTCATACATCTGACCAACATCGGCGGCATTTCCATGGGAATAAAGAAGCGTGGAAGTAGCCATAGGGTAACGGATGTAAACAGCGACAATCTCATTGCCTTTACGCGTCGGAAGCTTCCAGACATCGACATTTTCGCGGTGGGGAAAAGGGTCCAAGAGAAGAAGACCAGTGGGTTGGTCTGTGAGGAGTTTGTAAGAGGGTGGATTAGGAGGGAAGAAAGCGAATTTAGCAGCCATGGAAGAAGTAACCCCACCCATGAAGCTTCAGTGAGTGAGATTGGGGATTCAGAGAAGCTTCCTTCTCCGAAAAGTATGTGTTATTATCTGTCTCGAGGCAAGGCTTTGAGAGAACAGAGGCAAGAGAAGAGAAGAGAAGAGAGAAGAAGACTTTGGAGTGAGAGAAAGTGA

Coding sequence (CDS)

ATGCAGGAATTGAAGAAGAAAATGAACATACCCAAGAAGATTAACGCGCAAATGGATGCTGAGTTCAACGAAGAGCTCATACATCTGACCAACATCGGCGGCATTTCCATGGGAATAAAGAAGCGTGGAAGTAGCCATAGGGTAACGGATGTAAACAGCGACAATCTCATTGCCTTTACGCGTCGGAAGCTTCCAGACATCGACATTTTCGCGGTGGGGAAAAGGGTCCAAGAGAAGAAGACCAGTGGGTTGGTCTGTGAGGAGTTTGTAAGAGGGTGGATTAGGAGGGAAGAAAGCGAATTTAGCAGCCATGGAAGAAGTAACCCCACCCATGAAGCTTCAGTGAGTGAGATTGGGGATTCAGAGAAGCTTCCTTCTCCGAAAAGTATGTGTTATTATCTGTCTCGAGGCAAGGCTTTGAGAGAACAGAGGCAAGAGAAGAGAAGAGAAGAGAGAAGAAGACTTTGGAGTGAGAGAAAGTGA

Protein sequence

MQELKKKMNIPKKINAQMDAEFNEELIHLTNIGGISMGIKKRGSSHRVTDVNSDNLIAFTRRKLPDIDIFAVGKRVQEKKTSGLVCEEFVRGWIRREESEFSSHGRSNPTHEASVSEIGDSEKLPSPKSMCYYLSRGKALREQRQEKRREERRRLWSERK

Homology

[Close]

BLAST of CmUC06G125780 vs. NCBI nr
Match: RRT78354.1 (hypothetical protein B296_00019631 [Ensete ventricosum])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-05
Identity = 33/103 (32.04%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 11  PKKINAQMDAEFNEELIHLTNIGGISMGIKKRGSSHRVTDVNSDNLIAFTRRKLPDIDIF 70
           P +I+A+MDAEF+EE+ HL ++GG+ + +++RG    VT V+  NL+A  R +  D+ + 
Sbjct: 6   PDEIDAEMDAEFDEEIEHLADVGGVPVRVEQRGGRPGVTQVHRHNLVAPPRWEAEDVHVV 65

Query: 71  AVGKRVQ-EKKTSGLVCEEFVRGW-IRREESEFSSHGRSNPTH 112
           A  +R   + +   L+  +   GW +R +E E       +  H
Sbjct: 66  APRRRYPGDSEPPALLVGDHGVGWRVRGKEGELGGDRGRDSAH 108

[Close]

BLAST of CmUC06G125780 vs. NCBI nr
Match: RWW16880.1 (hypothetical protein GW17_00019213 [Ensete ventricosum] >RWW61054.1 hypothetical protein BHE74_00031903 [Ensete ventricosum] >RZR97058.1 hypothetical protein BHM03_00026171 [Ensete ventricosum])

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-04
Identity = 32/103 (31.07%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 11  PKKINAQMDAEFNEELIHLTNIGGISMGIKKRGSSHRVTDVNSDNLIAFTRRKLPDIDIF 70
           P +I+A+MDAE +EE+ HL ++GG+ + +++RG    VT V+  NL+A  R +  D+ + 
Sbjct: 6   PDEIDAEMDAELDEEIEHLADVGGVPVRVEQRGGRPGVTQVHRHNLVAPPRWEAEDVHVV 65

Query: 71  AVGKRVQ-EKKTSGLVCEEFVRGW-IRREESEFSSHGRSNPTH 112
           A  +R   + +   L+  +   GW +R +E E       +  H
Sbjct: 66  APRRRYPGDGEPPALLVGDHGVGWRVRGKEGELGGDRGRDSAH 108

[Close]

BLAST of CmUC06G125780 vs. ExPASy TrEMBL
Match: A0A427AQ45 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00019631 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.9e-06
Identity = 33/103 (32.04%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 11  PKKINAQMDAEFNEELIHLTNIGGISMGIKKRGSSHRVTDVNSDNLIAFTRRKLPDIDIF 70
           P +I+A+MDAEF+EE+ HL ++GG+ + +++RG    VT V+  NL+A  R +  D+ + 
Sbjct: 6   PDEIDAEMDAEFDEEIEHLADVGGVPVRVEQRGGRPGVTQVHRHNLVAPPRWEAEDVHVV 65

Query: 71  AVGKRVQ-EKKTSGLVCEEFVRGW-IRREESEFSSHGRSNPTH 112
           A  +R   + +   L+  +   GW +R +E E       +  H
Sbjct: 66  APRRRYPGDSEPPALLVGDHGVGWRVRGKEGELGGDRGRDSAH 108

[Close]

BLAST of CmUC06G125780 vs. ExPASy TrEMBL
Match: A0A444F2N1 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00019213 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.4e-05
Identity = 32/103 (31.07%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 11  PKKINAQMDAEFNEELIHLTNIGGISMGIKKRGSSHRVTDVNSDNLIAFTRRKLPDIDIF 70
           P +I+A+MDAE +EE+ HL ++GG+ + +++RG    VT V+  NL+A  R +  D+ + 
Sbjct: 6   PDEIDAEMDAELDEEIEHLADVGGVPVRVEQRGGRPGVTQVHRHNLVAPPRWEAEDVHVV 65

Query: 71  AVGKRVQ-EKKTSGLVCEEFVRGW-IRREESEFSSHGRSNPTH 112
           A  +R   + +   L+  +   GW +R +E E       +  H
Sbjct: 66  APRRRYPGDGEPPALLVGDHGVGWRVRGKEGELGGDRGRDSAH 108

The following BLAST results are available for this feature:

BLAST of CmUC06G125780 vs. NCBI nr


Match Name	E-value	Identity	Description
RRT78354.1	2.0e-05	32.04	hypothetical protein B296_00019631 [Ensete ventricosum]	[more]
RWW16880.1	1.7e-04	31.07	hypothetical protein GW17_00019213 [Ensete ventricosum] >RWW61054.1 hypothetical...	[more]

BLAST of CmUC06G125780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G125780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A427AQ45	9.9e-06	32.04	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00019631 PE=4 SV=1	[more]
A0A444F2N1	8.4e-05	31.07	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00019213 PE=4 SV=1	[more]

BLAST of CmUC06G125780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G125780.1	CmUC06G125780.1	mRNA