CmUC06G125270 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G125270
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	transcription factor MYB98-like
Location	CmU531Chr06: 28639130 .. 28639574 (+)
RNA-Seq Expression	CmUC06G125270
Synteny	CmUC06G125270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTCTCTTCTACGGGGCTATACAAGGAGTCTGAATCTGGACTCCAATAACACCGCTCGCCACCAGAAGAAAAGCTCAGCCCCCACTCCTCCCCCGTCAACAATAATACCAAATCATAATCAGCCGATCATCATCGTCATCATCGAACACAAACCACTGATTTTTGCCCTAACGATCAGACGGTTCCGGATTTCGATTTCAAGGAAGAATCAGAGAATCAGAGGATATACGGTTTTATCTCGACGATAGTTTCTTTCCGGAAGGATGTAGCATCAACTCGCACATGGAGGATATTGTTGGCGCTTCTGTTGATGAAGCCAATAATTATGATCGGAAATTATATAACGAAAACGAAGAATCGGTAGATTTTCGCTGTGTTGAAGTGGAGAAATTACAGTATTGTGCTCCGGTGAGTGCGGCGGCGGCGGCGGGTATGAAGTAG

mRNA sequence

ATGTGCTCTCTTCTACGGGGCTATACAAGGAGTCTGAATCTGGACTCCAATAACACCGCTCGCCACCAGAAGAAAAGCTCAGCCCCCACTCCTCCCCCAATCAGAGAATCAGAGGATATACGGTTTTATCTCGACGATAGTTTCTTTCCGGAAGGATGTAGCATCAACTCGCACATGGAGGATATTGTTGGCGCTTCTGTTGATGAAGCCAATAATTATGATCGGAAATTATATAACGAAAACGAAGAATCGGTAGATTTTCGCTGTGTTGAAGTGGAGAAATTACAGTATTGTGCTCCGGTGAGTGCGGCGGCGGCGGCGGGTATGAAGTAG

Coding sequence (CDS)

ATGTGCTCTCTTCTACGGGGCTATACAAGGAGTCTGAATCTGGACTCCAATAACACCGCTCGCCACCAGAAGAAAAGCTCAGCCCCCACTCCTCCCCCAATCAGAGAATCAGAGGATATACGGTTTTATCTCGACGATAGTTTCTTTCCGGAAGGATGTAGCATCAACTCGCACATGGAGGATATTGTTGGCGCTTCTGTTGATGAAGCCAATAATTATGATCGGAAATTATATAACGAAAACGAAGAATCGGTAGATTTTCGCTGTGTTGAAGTGGAGAAATTACAGTATTGTGCTCCGGTGAGTGCGGCGGCGGCGGCGGGTATGAAGTAG

Protein sequence

MCSLLRGYTRSLNLDSNNTARHQKKSSAPTPPPIRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLYNENEESVDFRCVEVEKLQYCAPVSAAAAAGMK

Homology

[Close]

BLAST of CmUC06G125270 vs. NCBI nr
Match: KAA0057864.1 (transcription factor MYB98-like [Cucumis melo var. makuwa] >TYJ98554.1 transcription factor MYB98-like [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 78/142 (54.93%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAP-------------------------------- 61
           CSLL+ Y +SLNLDSNN  RHQKKSSA                                 
Sbjct: 306 CSLLQDYIKSLNLDSNNAVRHQKKSSAAISSAVNNNTKSKSADHHHHHHHHQVQTTDFCP 365

Query: 62  ---TPPPIRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLY-NENEESV 108
              T P     E+  FYLDDSFFPEGCSINS MEDIVGASVDEANNYDRK Y N N+ESV
Sbjct: 366 NDWTVPDFDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYNNNNDESV 425

[Close]

BLAST of CmUC06G125270 vs. NCBI nr
Match: XP_008453673.1 (PREDICTED: transcription factor MYB98-like [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 78/142 (54.93%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAP-------------------------------- 61
           CSLL+ Y +SLNLDSNN  RHQKKSSA                                 
Sbjct: 308 CSLLQDYIKSLNLDSNNAVRHQKKSSAAISSAVNNNTKSKSADHHHHHHHHQVQTTDFCP 367

Query: 62  ---TPPPIRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLY-NENEESV 108
              T P     E+  FYLDDSFFPEGCSINS MEDIVGASVDEANNYDRK Y N N+ESV
Sbjct: 368 NDWTVPDFDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYNNNNDESV 427

[Close]

BLAST of CmUC06G125270 vs. NCBI nr
Match: XP_031736862.1 (transcription factor MYB98 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.8e-27
Identity = 77/138 (55.80%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAP-------------------------------- 61
           CSLL+ Y +SLNLDSN   RHQKKSSA                                 
Sbjct: 309 CSLLQDYIKSLNLDSNTAVRHQKKSSAAISSAVNNNNKSKSADHHYHHQVQTTDFCPNDW 368

Query: 62  TPPPIRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLYNE-NEESVDFR 107
           T P     E+  FYLDDSFFPEGCSINS MEDIVGASVDEANNYDRK YN+ N+ESV+ R
Sbjct: 369 TVPDFDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYNDNNDESVELR 428

[Close]

BLAST of CmUC06G125270 vs. NCBI nr
Match: KGN63574.1 (hypothetical protein Csa_013746 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.8e-27
Identity = 77/138 (55.80%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAP-------------------------------- 61
           CSLL+ Y +SLNLDSN   RHQKKSSA                                 
Sbjct: 307 CSLLQDYIKSLNLDSNTAVRHQKKSSAAISSAVNNNNKSKSADHHYHHQVQTTDFCPNDW 366

Query: 62  TPPPIRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLYNE-NEESVDFR 107
           T P     E+  FYLDDSFFPEGCSINS MEDIVGASVDEANNYDRK YN+ N+ESV+ R
Sbjct: 367 TVPDFDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYNDNNDESVELR 426

[Close]

BLAST of CmUC06G125270 vs. NCBI nr
Match: XP_038879249.1 (transcription factor MYB98-like [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 71/138 (51.45%), Postives = 82/138 (59.42%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAPTPPPIRES------------------------ 61
           CSLL+ Y +SLNL+SNN ARHQKKSS  T   +  +                        
Sbjct: 248 CSLLQDYIKSLNLNSNNAARHQKKSSGATSSAVNNNSKSKSTNHHHHNQVQTTNFCPNDW 307

Query: 62  --------EDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLYNENEESVDFRC 108
                   E+   YLDDSFFPEGCS NS MEDIV ASVDEANNYDR+ YN+NEE  +F  
Sbjct: 308 TVPDFDFKEEPEIYLDDSFFPEGCSTNSLMEDIVAASVDEANNYDRERYNDNEELAEFCR 367

[Close]

BLAST of CmUC06G125270 vs. ExPASy TrEMBL
Match: A0A5D3BHK8 (Transcription factor MYB98-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001700 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.3e-28
Identity = 78/142 (54.93%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAP-------------------------------- 61
           CSLL+ Y +SLNLDSNN  RHQKKSSA                                 
Sbjct: 306 CSLLQDYIKSLNLDSNNAVRHQKKSSAAISSAVNNNTKSKSADHHHHHHHHQVQTTDFCP 365

Query: 62  ---TPPPIRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLY-NENEESV 108
              T P     E+  FYLDDSFFPEGCSINS MEDIVGASVDEANNYDRK Y N N+ESV
Sbjct: 366 NDWTVPDFDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYNNNNDESV 425

[Close]

BLAST of CmUC06G125270 vs. ExPASy TrEMBL
Match: A0A1S3BWA8 (transcription factor MYB98-like OS=Cucumis melo OX=3656 GN=LOC103494322 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.3e-28
Identity = 78/142 (54.93%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAP-------------------------------- 61
           CSLL+ Y +SLNLDSNN  RHQKKSSA                                 
Sbjct: 308 CSLLQDYIKSLNLDSNNAVRHQKKSSAAISSAVNNNTKSKSADHHHHHHHHQVQTTDFCP 367

Query: 62  ---TPPPIRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLY-NENEESV 108
              T P     E+  FYLDDSFFPEGCSINS MEDIVGASVDEANNYDRK Y N N+ESV
Sbjct: 368 NDWTVPDFDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYNNNNDESV 427

[Close]

BLAST of CmUC06G125270 vs. ExPASy TrEMBL
Match: A0A0A0LRG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004900 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 77/138 (55.80%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAP-------------------------------- 61
           CSLL+ Y +SLNLDSN   RHQKKSSA                                 
Sbjct: 307 CSLLQDYIKSLNLDSNTAVRHQKKSSAAISSAVNNNNKSKSADHHYHHQVQTTDFCPNDW 366

Query: 62  TPPPIRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLYNE-NEESVDFR 107
           T P     E+  FYLDDSFFPEGCSINS MEDIVGASVDEANNYDRK YN+ N+ESV+ R
Sbjct: 367 TVPDFDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYNDNNDESVELR 426

[Close]

BLAST of CmUC06G125270 vs. ExPASy TrEMBL
Match: A0A6J1E0A8 (transcription factor MYB98-like OS=Cucurbita moschata OX=3662 GN=LOC111429667 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.9e-24
Identity = 75/139 (53.96%), Postives = 85/139 (61.15%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAP-----------------------------TPP 61
           CSLL+ Y +SLNLD+   ARHQKKSSA                              T P
Sbjct: 309 CSLLQDYIKSLNLDT-VAARHQKKSSATSAVNNTKSKVTDHRHHHQAQITEFCPNDWTVP 368

Query: 62  PIRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLYNENEESVDFRCVEV 111
                ++   YLDDSFFPEGCSINS MEDI GASVD+ANNYDRK YN+NEESV+FR VE+
Sbjct: 369 NFDFKDEPEIYLDDSFFPEGCSINSLMEDIAGASVDDANNYDRKRYNDNEESVEFRRVEM 428

[Close]

BLAST of CmUC06G125270 vs. ExPASy TrEMBL
Match: A0A6J1JEG6 (transcription factor MYB98-like OS=Cucurbita maxima OX=3661 GN=LOC111485058 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.8e-23
Identity = 73/138 (52.90%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 2   CSLLRGYTRSLNLDSNNTARHQKKSSAP----------------------------TPPP 61
           CSLL+ Y +SLNLDS   ARHQKKSSA                             T P 
Sbjct: 309 CSLLQDYIKSLNLDS-VAARHQKKSSATSAVNNTKSKVADHHHHQTQTTEFCPNDWTVPN 368

Query: 62  IRESEDIRFYLDDSFFPEGCSINSHMEDIVGASVDEANNYDRKLYNENEESVDFRCVEVE 111
               ++   YLDDSFFPEGCSINS +EDI GA VD+ANNYDRK YN+NEESV+FR VE+E
Sbjct: 369 FDFKDEPEIYLDDSFFPEGCSINSLVEDIAGAYVDDANNYDRKRYNDNEESVEFRRVEME 428

The following BLAST results are available for this feature:

BLAST of CmUC06G125270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057864.1	1.7e-27	54.93	transcription factor MYB98-like [Cucumis melo var. makuwa] >TYJ98554.1 transcrip...	[more]
XP_008453673.1	1.7e-27	54.93	PREDICTED: transcription factor MYB98-like [Cucumis melo]	[more]
XP_031736862.1	3.8e-27	55.80	transcription factor MYB98 [Cucumis sativus]	[more]
KGN63574.1	3.8e-27	55.80	hypothetical protein Csa_013746 [Cucumis sativus]	[more]
XP_038879249.1	1.4e-24	51.45	transcription factor MYB98-like [Benincasa hispida]	[more]

BLAST of CmUC06G125270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G125270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHK8	8.3e-28	54.93	Transcription factor MYB98-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BWA8	8.3e-28	54.93	transcription factor MYB98-like OS=Cucumis melo OX=3656 GN=LOC103494322 PE=4 SV=...	[more]
A0A0A0LRG5	1.8e-27	55.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004900 PE=4 SV=1	[more]
A0A6J1E0A8	1.9e-24	53.96	transcription factor MYB98-like OS=Cucurbita moschata OX=3662 GN=LOC111429667 PE...	[more]
A0A6J1JEG6	2.8e-23	52.90	transcription factor MYB98-like OS=Cucurbita maxima OX=3661 GN=LOC111485058 PE=4...	[more]

BLAST of CmUC06G125270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G125270.1	CmUC06G125270.1	mRNA