CmUC06G124330 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G124330
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	photosynthetic NDH subunit of subcomplex B 4, chloroplastic
Location	CmU531Chr06: 27808797 .. 27810051 (+)
RNA-Seq Expression	CmUC06G124330
Synteny	CmUC06G124330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATTCCAAAGCCAACCCATGTAATAGCCATCAGTTTCTATTATCTGTTCTTCTACAATTATGGCCAAGGCTATTGCAGGCTTCAGCATTATCAAACCAACCCTGCATAGCTCAAATCTCCACCCACACAAATCAACTATCATCCCACATTCAAAACTGGTATAGAATTGTCTTTTCTCTTTTTGCCTCAAAATTCCATTCATTTTTAACATCCTCAATTTTACCATTATATTATGATTGTTGCAGCTTTCAAACTCTAGAGCTTTCAGTCATCAAGAACTGGTAAGTTCCTCTGATTCCCCACAACAAAGAAAGTAAAATTGATTGAGAAATTCAATATACAGAAGCTCATGTGTTTTTGTTCAATAAATAGCCTGAAGTTACAAAGCCACAAAGGGGTTCTCTGAGCAAAGTGAATGCCTTCCCAGATTGGCAATTGATGGCAGTTCTAGTTGATCACTTGGATGGCCAAAGAGACCTTGTTACCCATAAATCCATAGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTGTAAGTGTTTGATTGTGCTTAATTTTCTGTAAATCTGTTGGAGACTGTAGACAGAATTAAGCCATTGGAATGGAAACTGACCTTAACTTTAACATTTAAACCATTGTTTAATGTCAGACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTGTTCTTTGGCTCCATGAAGGTACCATATCTCCAGTTTCAGTGTGTTTGGGTTGAGTCAAATTGTTGTGTACTGAACAGGATTATGGTTTTAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGGTAACTTTCTTTTGTGGGACTTGAAAGATCTTTAGCAATGGCACTATGTTTAAGGTTTTTTCTTTGTAAATGTCTGATATTGCAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAGCAAAGGGTTGGAGGACTAAAAGAGTTGGAAGAAGCTGGAAAGAAATAAGAGATTTTGGGAATCCATTTGTGTTCTTAATTTATTACAGCATAAATCGTTCTGTGTATATATTGAAACACTTGGGATTCTTTAGCTGTTGGAAATATGAGAGTTCTAGAAAAGAGAACAAAAATGTAAAACAGCAGAAACCATCTAAAAACATAAGAAAACATCAGTTCTTGTATGAAAGAATTTGCCTAATGTTGTATCATCA

mRNA sequence

AGATTCCAAAGCCAACCCATGTAATAGCCATCAGTTTCTATTATCTGTTCTTCTACAATTATGGCCAAGGCTATTGCAGGCTTCAGCATTATCAAACCAACCCTGCATAGCTCAAATCTCCACCCACACAAATCAACTATCATCCCACATTCAAAACTGCTTTCAAACTCTAGAGCTTTCAGTCATCAAGAACTGCCTGAAGTTACAAAGCCACAAAGGGGTTCTCTGAGCAAAGTGAATGCCTTCCCAGATTGGCAATTGATGGCAGTTCTAGTTGATCACTTGGATGGCCAAAGAGACCTTGTTACCCATAAATCCATAGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAGCAAAGGGTTGGAGGACTAAAAGAGTTGGAAGAAGCTGGAAAGAAATAAGAGATTTTGGGAATCCATTTGTGTTCTTAATTTATTACAGCATAAATCGTTCTGTGTATATATTGAAACACTTGGGATTCTTTAGCTGTTGGAAATATGAGAGTTCTAGAAAAGAGAACAAAAATGTAAAACAGCAGAAACCATCTAAAAACATAAGAAAACATCAGTTCTTGTATGAAAGAATTTGCCTAATGTTGTATCATCA

Coding sequence (CDS)

ATGGCCAAGGCTATTGCAGGCTTCAGCATTATCAAACCAACCCTGCATAGCTCAAATCTCCACCCACACAAATCAACTATCATCCCACATTCAAAACTGCTTTCAAACTCTAGAGCTTTCAGTCATCAAGAACTGCCTGAAGTTACAAAGCCACAAAGGGGTTCTCTGAGCAAAGTGAATGCCTTCCCAGATTGGCAATTGATGGCAGTTCTAGTTGATCACTTGGATGGCCAAAGAGACCTTGTTACCCATAAATCCATAGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAGCAAAGGGTTGGAGGACTAAAAGAGTTGGAAGAAGCTGGAAAGAAATAA

Protein sequence

MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK

Homology

[Close]

BLAST of CmUC06G124330 vs. NCBI nr
Match: XP_038880039.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 347.8 bits (891), Expect = 5.5e-92
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFSIIKPTLHSSNLH HKST+IP SKLLSNSRAF+HQE PEVTKP+RGSL K+N
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHQHKSTLIPPSKLLSNSRAFNHQEPPEVTKPRRGSLGKLN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 178

[Close]

BLAST of CmUC06G124330 vs. NCBI nr
Match: XP_008453213.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis melo] >KAA0057951.1 photosynthetic NDH subunit of subcomplex B 4 [Cucumis melo var. makuwa])

HSP 1 Score: 341.7 bits (875), Expect = 3.9e-90
Identity = 168/178 (94.38%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFSIIKPTLHSSNLHP KS +IPHSKLLSNS  FSHQELP+V KP+RGSLSKVN
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of CmUC06G124330 vs. NCBI nr
Match: XP_004138173.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis sativus] >KGN63679.1 hypothetical protein Csa_013717 [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 1.9e-89
Identity = 167/178 (93.82%), Postives = 172/178 (96.63%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFSIIKPTLHSSNLHP KS +IPHSKLLSNS  FSHQELP+V KP+RGSLSKVN
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVVKPKRGSLSKVN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of CmUC06G124330 vs. NCBI nr
Match: XP_023516363.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 160/178 (89.89%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFS+I PTLHSSNLHPHKST+IPH KL SNS  F HQ+L E TK QRGS+ KV+
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKSTLIPHPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of CmUC06G124330 vs. NCBI nr
Match: XP_022987205.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 325.9 bits (834), Expect = 2.2e-85
Identity = 158/178 (88.76%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFS+I PTLHSSNLHPHK+T+IP  KL SNS  F HQ+L E TK QRGS+ KV+
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of CmUC06G124330 vs. ExPASy Swiss-Prot
Match: Q8RXS1 (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.5e-47
Identity = 101/179 (56.42%), Postives = 120/179 (67.04%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MA+A   F+     + SS  H  K    P+     +      +E        RGSL    
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSKNVNEKRE----RNLMRGSLCVRK 60

Query: 61  AFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP
Sbjct: 61  ALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           +YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQ+VGGL+ELEEA  K
Sbjct: 121 FYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 175

[Close]

BLAST of CmUC06G124330 vs. ExPASy TrEMBL
Match: A0A5A7UWT7 (Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002540 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.9e-90
Identity = 168/178 (94.38%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFSIIKPTLHSSNLHP KS +IPHSKLLSNS  FSHQELP+V KP+RGSLSKVN
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of CmUC06G124330 vs. ExPASy TrEMBL
Match: A0A1S3BVN6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494001 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.9e-90
Identity = 168/178 (94.38%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFSIIKPTLHSSNLHP KS +IPHSKLLSNS  FSHQELP+V KP+RGSLSKVN
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of CmUC06G124330 vs. ExPASy TrEMBL
Match: A0A0A0LRP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009830 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 9.4e-90
Identity = 167/178 (93.82%), Postives = 172/178 (96.63%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFSIIKPTLHSSNLHP KS +IPHSKLLSNS  FSHQELP+V KP+RGSLSKVN
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVVKPKRGSLSKVN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of CmUC06G124330 vs. ExPASy TrEMBL
Match: A0A6J1JG67 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484826 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 158/178 (88.76%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFS+I PTLHSSNLHPHK+T+IP  KL SNS  F HQ+L E TK QRGS+ KV+
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of CmUC06G124330 vs. ExPASy TrEMBL
Match: A0A6J1E2I6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429992 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.4e-85
Identity = 157/178 (88.20%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MAKAIAGFS++ PTLHSSNLHPHKST+IP  KL SNS  F HQ+L E TK QRGS+ KV+
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQ+VGGL+ELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of CmUC06G124330 vs. TAIR 10
Match: AT1G18730.3 (NDH dependent flow 6 )

HSP 1 Score: 191.8 bits (486), Expect = 4.7e-49
Identity = 105/180 (58.33%), Postives = 122/180 (67.78%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIP-HSKLLSNSRAFSHQELPEVTKPQRGSLSKV 60
           MA+A   F+     + SS  H  K    P H   LSN      + L       RGSL   
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNL------MRGSLCVR 60

Query: 61  NAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
            A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KD
Sbjct: 61  KALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           P+YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQ+VGGL+ELEEA  K
Sbjct: 121 PFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 174

[Close]

BLAST of CmUC06G124330 vs. TAIR 10
Match: AT1G18730.1 (NDH dependent flow 6 )

HSP 1 Score: 188.0 bits (476), Expect = 6.7e-48
Identity = 101/179 (56.42%), Postives = 120/179 (67.04%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIPHSKLLSNSRAFSHQELPEVTKPQRGSLSKVN 60
           MA+A   F+     + SS  H  K    P+     +      +E        RGSL    
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSKNVNEKRE----RNLMRGSLCVRK 60

Query: 61  AFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP
Sbjct: 61  ALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 179
           +YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQ+VGGL+ELEEA  K
Sbjct: 121 FYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 175

[Close]

BLAST of CmUC06G124330 vs. TAIR 10
Match: AT1G18730.2 (NDH dependent flow 6 )

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-32
Identity = 74/142 (52.11%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIP-HSKLLSNSRAFSHQELPEVTKPQRGSLSKV 60
           MA+A   F+     + SS  H  K    P H   LSN      + L       RGSL   
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNL------MRGSLCVR 60

Query: 61  NAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
            A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KD
Sbjct: 61  KALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYE 141
           P+YDSE YR DGGDGTG+WVYE
Sbjct: 121 PFYDSEEYRGDGGDGTGYWVYE 136

[Close]

BLAST of CmUC06G124330 vs. TAIR 10
Match: AT1G18730.4 (NDH dependent flow 6 )

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-32
Identity = 74/142 (52.11%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSTIIP-HSKLLSNSRAFSHQELPEVTKPQRGSLSKV 60
           MA+A   F+     + SS  H  K    P H   LSN      + L       RGSL   
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNL------MRGSLCVR 60

Query: 61  NAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
            A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KD
Sbjct: 61  KALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYE 141
           P+YDSE YR DGGDGTG+WVYE
Sbjct: 121 PFYDSEEYRGDGGDGTGYWVYE 136

The following BLAST results are available for this feature:

BLAST of CmUC06G124330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880039.1	5.5e-92	95.51	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida]	[more]
XP_008453213.1	3.9e-90	94.38	PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis ...	[more]
XP_004138173.1	1.9e-89	93.82	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis sativus] >K...	[more]
XP_023516363.1	1.2e-86	89.89	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo...	[more]
XP_022987205.1	2.2e-85	88.76	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi...	[more]

BLAST of CmUC06G124330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXS1	9.5e-47	56.42	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of CmUC06G124330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWT7	1.9e-90	94.38	Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BVN6	1.9e-90	94.38	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A0A0LRP8	9.4e-90	93.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009830 PE=4 SV=1	[more]
A0A6J1JG67	1.1e-85	88.76	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma...	[more]
A0A6J1E2I6	2.4e-85	88.20	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita mo...	[more]

BLAST of CmUC06G124330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18730.3	4.7e-49	58.33	NDH dependent flow 6	[more]
AT1G18730.1	6.7e-48	56.42	NDH dependent flow 6	[more]
AT1G18730.2	1.0e-32	52.11	NDH dependent flow 6	[more]
AT1G18730.4	1.0e-32	52.11	NDH dependent flow 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 155..175
IPR034570	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic	PANTHER	PTHR36315	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTIC	coord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G124330.1	CmUC06G124330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)