CmUC06G121070 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G121070
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	glycine-rich cell wall structural protein-like
Location	CmU531Chr06: 24581804 .. 24582208 (-)
RNA-Seq Expression	CmUC06G121070
Synteny	CmUC06G121070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTGTGTATGTCTGTGATTGAATCACAAGCGGGGCGTGTGGCCAGGAAGGACCTAGGCCTTGATCTTGGTGGAGTGGGAGTTGGCCTTGGCCTTGGCTTAGGCTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGCTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGTTCATATTCGTCATCGTCGTCACACTCATCAAGCTCTAGCTATGGAGGCTCCGGTGCAGGCTCTGAAGCTGGTTCGTACGCTGGGTCTTATGCAGGGTCACGTGCTGGCTCAGGAGCCGGGAGAGGAAACCGCGGCGGCGGTGGAGAGGGCCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAACTAA

mRNA sequence

ATGGGCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTGTGTATGTCTGTGATTGAATCACAAGCGGGGCGTGTGGCCAGGAAGGACCTAGGCCTTGATCTTGGTGGAGTGGGAGTTGGCCTTGGCCTTGGCTTAGGCTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGCTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGTTCATATTCGTCATCGTCGTCACACTCATCAAGCTCTAGCTATGGAGGCTCCGGTGCAGGCTCTGAAGCTGGTTCGTACGCTGGGTCTTATGCAGGGTCACGTGCTGGCTCAGGAGCCGGGAGAGGAAACCGCGGCGGCGGTGGAGAGGGCCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAACTAA

Coding sequence (CDS)

ATGGGCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTGTGTATGTCTGTGATTGAATCACAAGCGGGGCGTGTGGCCAGGAAGGACCTAGGCCTTGATCTTGGTGGAGTGGGAGTTGGCCTTGGCCTTGGCTTAGGCTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGCTGGAGCCGGGTCTGGATCCGGATCCGGGTCTGGTTCATATTCGTCATCGTCGTCACACTCATCAAGCTCTAGCTATGGAGGCTCCGGTGCAGGCTCTGAAGCTGGTTCGTACGCTGGGTCTTATGCAGGGTCACGTGCTGGCTCAGGAGCCGGGAGAGGAAACCGCGGCGGCGGTGGAGAGGGCCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAACTAA

Protein sequence

MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGEGHGYGEGRGYGEGGNN

Homology

[Close]

BLAST of CmUC06G121070 vs. NCBI nr
Match: XP_038880102.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M +IKAI+VLCLVLCMSVIES AGRVARKDLGLDLGG+GVGLGLGLGLGLGGGSGSGAGA
Sbjct: 1   MATIKAIAVLCLVLCMSVIESGAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGEGH 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+GRGN  GGGEGH
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGNGRGGGEGH 120

Query: 121 GYGEGRGYGEGGNN 135
           GYGEGRGYGEGGNN
Sbjct: 121 GYGEGRGYGEGGNN 134

[Close]

BLAST of CmUC06G121070 vs. NCBI nr
Match: XP_011656027.1 (glycine-rich protein DOT1 [Cucumis sativus] >KGN65264.1 hypothetical protein Csa_020034 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 8.7e-42
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M SIKAI+VLCLVLCMSVIES+AGRVARKDLGLDLGG+GVGLGLGLGLGLGGGSGSGAGA
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGEGH 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+G  N   GGEGH
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120

Query: 121 GYGEGRGYGEGGNN 135
           GYGEG GYGEGGNN
Sbjct: 121 GYGEGHGYGEGGNN 134

[Close]

BLAST of CmUC06G121070 vs. NCBI nr
Match: XP_008443814.1 (PREDICTED: glycine-rich protein DOT1-like [Cucumis melo] >KAA0035122.1 glycine-rich protein DOT1-like [Cucumis melo var. makuwa] >TYJ95958.1 glycine-rich protein DOT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-38
Identity = 120/136 (88.24%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M SIKAI VLCLVLCMSVIES+AGRVARK+LGLDLGG+GVGLGLGLGLG+GGGSGSGAGA
Sbjct: 1   MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60

Query: 61  --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGE 120
             GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+ R N   GGE
Sbjct: 61  GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120

Query: 121 GHGYGEGRGYGEGGNN 135
            HGYGEG GYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136

[Close]

BLAST of CmUC06G121070 vs. NCBI nr
Match: XP_022921885.1 (glycine-rich protein DOT1-like [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31
Identity = 113/139 (81.29%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M SI+AI+VLC V+CMS IESQ GRVARKDLGLDLGG+GVGLG+GLGLGLGGGSGSG+G+
Sbjct: 1   MTSIRAIAVLCFVVCMSAIESQ-GRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60

Query: 61  GSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGG-- 120
           GSGSGSGSGS S   SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS +GR  R GG  
Sbjct: 61  GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSG 120

Query: 121 -GEGHGYGEGRGYGEGGNN 135
            GEG GYGEGRGYGEGGNN
Sbjct: 121 YGEGRGYGEGRGYGEGGNN 138

[Close]

BLAST of CmUC06G121070 vs. NCBI nr
Match: XP_023515820.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-30
Identity = 109/140 (77.86%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M SI++I+VLC V+CMS IESQ GRVARKDLGLDLGG+GVGLG+GLGLGLGGGSGSG+G+
Sbjct: 1   MTSIRSIAVLCFVVCMSAIESQ-GRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGS---------GAGRG 120
           GSGSGSGSGSY  SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS         G+G G
Sbjct: 61  GSGSGSGSGSY--SSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSGYG 120

Query: 121 NRGGGGEGHGYGEGRGYGEG 132
             GGGG G GYGEGRGYGEG
Sbjct: 121 GGGGGGRGEGYGEGRGYGEG 137

[Close]

BLAST of CmUC06G121070 vs. ExPASy TrEMBL
Match: A0A0A0LW94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278490 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.2e-42
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M SIKAI+VLCLVLCMSVIES+AGRVARKDLGLDLGG+GVGLGLGLGLGLGGGSGSGAGA
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGEGH 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+G  N   GGEGH
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120

Query: 121 GYGEGRGYGEGGNN 135
           GYGEG GYGEGGNN
Sbjct: 121 GYGEGHGYGEGGNN 134

[Close]

BLAST of CmUC06G121070 vs. ExPASy TrEMBL
Match: A0A5A7SV53 (Glycine-rich protein DOT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00240 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.7e-39
Identity = 120/136 (88.24%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M SIKAI VLCLVLCMSVIES+AGRVARK+LGLDLGG+GVGLGLGLGLG+GGGSGSGAGA
Sbjct: 1   MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60

Query: 61  --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGE 120
             GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+ R N   GGE
Sbjct: 61  GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120

Query: 121 GHGYGEGRGYGEGGNN 135
            HGYGEG GYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136

[Close]

BLAST of CmUC06G121070 vs. ExPASy TrEMBL
Match: A0A1S3B9P9 (glycine-rich protein DOT1-like OS=Cucumis melo OX=3656 GN=LOC103487317 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.7e-39
Identity = 120/136 (88.24%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M SIKAI VLCLVLCMSVIES+AGRVARK+LGLDLGG+GVGLGLGLGLG+GGGSGSGAGA
Sbjct: 1   MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60

Query: 61  --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGGGE 120
             GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSG+ R N   GGE
Sbjct: 61  GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120

Query: 121 GHGYGEGRGYGEGGNN 135
            HGYGEG GYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136

[Close]

BLAST of CmUC06G121070 vs. ExPASy TrEMBL
Match: A0A6J1E720 (glycine-rich protein DOT1-like OS=Cucurbita moschata OX=3662 GN=LOC111430016 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.7e-32
Identity = 113/139 (81.29%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M SI+AI+VLC V+CMS IESQ GRVARKDLGLDLGG+GVGLG+GLGLGLGGGSGSG+G+
Sbjct: 1   MTSIRAIAVLCFVVCMSAIESQ-GRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60

Query: 61  GSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAGRGNRGGG-- 120
           GSGSGSGSGS S   SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS +GR  R GG  
Sbjct: 61  GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSG 120

Query: 121 -GEGHGYGEGRGYGEGGNN 135
            GEG GYGEGRGYGEGGNN
Sbjct: 121 YGEGRGYGEGRGYGEGGNN 138

[Close]

BLAST of CmUC06G121070 vs. ExPASy TrEMBL
Match: A0A6J1C269 (glycine-rich cell wall structural protein 2-like OS=Momordica charantia OX=3673 GN=LOC111007265 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.8e-30
Identity = 111/152 (73.03%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M SI+AI+ +C V+C   IESQA RVARKDLGLDLGG+G+GLG G+GLG+GGGSGSGAGA
Sbjct: 1   MASIRAIAFVCFVVCFCAIESQA-RVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGS-------------- 120
           GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS AGS +GS              
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAGSGSGSGRNYRNGGSGSGSG 120

Query: 121 ---GAGRGNRGGGGEGHGYGEGRGY-GEGGNN 135
              G+GRGN  G GEGHGYGEGRGY GEGGNN
Sbjct: 121 YGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN 151

[Close]

BLAST of CmUC06G121070 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-18
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           + +  ++ ++ L+L  SV+ S++ RVARKDLGLDLGG+G G+G+G+G+G GGGSGSGAGA
Sbjct: 4   LNNSSSLILITLILATSVLVSES-RVARKDLGLDLGGIGAGIGIGIGIG-GGGSGSGAGA 63

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSG--AGSEAGSYAGSYAGS----RAGSGAGRGNRG 120
           GSGSG G  S SSSSS SSSSS GG G  AGSEAGSYAGS+AGS    R+GSG GRG+ G
Sbjct: 64  GSGSGGGGSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGG 123

Query: 121 GGGEGHGYGEGRGYGEGGNN 135
           GGG G G G G G G GG +
Sbjct: 124 GGGHGGGGGGGGGRGGGGGS 141

[Close]

BLAST of CmUC06G121070 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-18
Identity = 72/109 (66.06%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MGSIKAISVLCLVLCMSVIESQAGRVARKDLGLDLGGVGVGLGLGLGLGLGGGSGSGAGA 60
           M   + + +L LV+  S++     R+ARKDLG+DLGG+G+GLG+GLG+GLGGGSGSGAGA
Sbjct: 1   MAKAEGLFLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGAG 110
           GSGSGSGS S SSSSS SSSSS   SG+G  AGS AGS+AGSRAGSG+G
Sbjct: 61  GSGSGSGSRSSSSSSSSSSSSS---SGSGGSAGSSAGSFAGSRAGSGSG 106

The following BLAST results are available for this feature:

BLAST of CmUC06G121070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880102.1	1.2e-43	94.03	glycine-rich cell wall structural protein 2-like [Benincasa hispida]	[more]
XP_011656027.1	8.7e-42	91.79	glycine-rich protein DOT1 [Cucumis sativus] >KGN65264.1 hypothetical protein Csa...	[more]
XP_008443814.1	2.0e-38	88.24	PREDICTED: glycine-rich protein DOT1-like [Cucumis melo] >KAA0035122.1 glycine-r...	[more]
XP_022921885.1	1.4e-31	81.29	glycine-rich protein DOT1-like [Cucurbita moschata]	[more]
XP_023515820.1	1.5e-30	77.86	putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo...	[more]

BLAST of CmUC06G121070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G121070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW94	4.2e-42	91.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278490 PE=4 SV=1	[more]
A0A5A7SV53	9.7e-39	88.24	Glycine-rich protein DOT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B9P9	9.7e-39	88.24	glycine-rich protein DOT1-like OS=Cucumis melo OX=3656 GN=LOC103487317 PE=4 SV=1	[more]
A0A6J1E720	6.7e-32	81.29	glycine-rich protein DOT1-like OS=Cucurbita moschata OX=3662 GN=LOC111430016 PE=...	[more]
A0A6J1C269	2.8e-30	73.03	glycine-rich cell wall structural protein 2-like OS=Momordica charantia OX=3673 ...	[more]

BLAST of CmUC06G121070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	1.9e-18	62.14	glycine-rich protein	[more]
AT4G30450.1	3.2e-18	66.06	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..134
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 1..132
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G121070.1	CmUC06G121070.1	mRNA