Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGTTTGAAATCCTTGCTTCTTGCTGCTCTGCTTATTTCGTCTCTTTTTGTTGTGTCTCATAGCCGAGTGGCCAGGAAAGATTTGGGCATTGACTTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTTGGTGGAAGTGGCTCCGGCTCGGGCTCGGGCTCGGGCTCGGGCTCGGGCTCTGGCTCTGGATCTAGTTCCAGTTCGAGTTCTAGTTCTAGCTCTTCTTCTTCTGGGTCGGGTTCCGACGCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCGGGCTCTGGGTCGGGTGGTCGTGGAGGAGGAGGGTCGGGCTATGGTGGAGGATATGGATCAGGTTATGGAGGAGGACATGGAAAATGA
mRNA sequence
ATGAGTAGTTTGAAATCCTTGCTTCTTGCTGCTCTGCTTATTTCGTCTCTTTTTGTTGTGTCTCATAGCCGAGTGGCCAGGAAAGATTTGGGCATTGACTTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTTGGTGGAAGTGGCTCCGGCTCGGGCTCGGGCTCGGGCTCGGGCTCGGGCTCTGGCTCTGGATCTAGTTCCAGTTCGAGTTCTAGTTCTAGCTCTTCTTCTTCTGGGTCGGGTTCCGACGCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCGGGCTCTGGGTCGGGTGGTCGTGGAGGAGGAGGGTCGGGCTATGGTGGAGGATATGGATCAGGTTATGGAGGAGGACATGGAAAATGA
Coding sequence (CDS)
ATGAGTAGTTTGAAATCCTTGCTTCTTGCTGCTCTGCTTATTTCGTCTCTTTTTGTTGTGTCTCATAGCCGAGTGGCCAGGAAAGATTTGGGCATTGACTTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTTGGTGGAAGTGGCTCCGGCTCGGGCTCGGGCTCGGGCTCGGGCTCGGGCTCTGGCTCTGGATCTAGTTCCAGTTCGAGTTCTAGTTCTAGCTCTTCTTCTTCTGGGTCGGGTTCCGACGCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCGGGCTCTGGGTCGGGTGGTCGTGGAGGAGGAGGGTCGGGCTATGGTGGAGGATATGGATCAGGTTATGGAGGAGGACATGGAAAATGA
Protein sequence
MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYGGGHGK
Homology
BLAST of CmUC06G121060 vs. NCBI nr
Match:
XP_038879831.1 (glycine-rich cell wall structural protein 2 [Benincasa hispida])
HSP 1 Score: 147.1 bits (370), Expect = 1.0e-31
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M SLKSL+LAALL+SSLFVVSHSRVARKDLG+DLGGVGVGIGAGIGIGLG GSGSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSLFVVSHSRVARKDLGLDLGGVGVGIGAGIGIGLG--GSGSGSGS 60
Query: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
GSGSGSGSGSSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSGSGG GGGGSGYGGGYG
Sbjct: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGHGGGGSGYGGGYG 120
Query: 121 SGYGGGHGK 130
GYGGGH K
Sbjct: 121 GGYGGGHRK 127
BLAST of CmUC06G121060 vs. NCBI nr
Match:
XP_022921886.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])
HSP 1 Score: 141.4 bits (355), Expect = 5.6e-30
Identity = 116/129 (89.92%), Postives = 120/129 (93.02%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M S KSLLLAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLG GSGSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLG----GSGSGS 60
Query: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
GSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG
Sbjct: 61 GSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
Query: 121 SGYGGGHGK 130
SGYGGGHGK
Sbjct: 121 SGYGGGHGK 125
BLAST of CmUC06G121060 vs. NCBI nr
Match:
XP_023515822.1 (counting factor 45-1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 138.7 bits (348), Expect = 3.6e-29
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M S KSLLLAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLG GSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLG------GSGS 60
Query: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
GSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG
Sbjct: 61 GSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
Query: 121 SGYGGGHGK 130
SGYGGGHGK
Sbjct: 121 SGYGGGHGK 123
BLAST of CmUC06G121060 vs. NCBI nr
Match:
XP_004146662.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypothetical protein Csa_019748 [Cucumis sativus])
HSP 1 Score: 138.3 bits (347), Expect = 4.8e-29
Identity = 115/130 (88.46%), Postives = 123/130 (94.62%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVV-SHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
M SLKSL+LAALL+SSLFVV S SRVARKDLG+DLGGVG+G+GAG+GIGLG GSGSG+G
Sbjct: 1 MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLG--GSGSGAG 60
Query: 61 SGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGY 120
SGSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSGSGGRGG GSGYGGGY
Sbjct: 61 SGSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGY 120
Query: 121 GSGYGGGHGK 130
GSGYGGGHGK
Sbjct: 121 GSGYGGGHGK 128
BLAST of CmUC06G121060 vs. NCBI nr
Match:
XP_022988598.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])
HSP 1 Score: 138.3 bits (347), Expect = 4.8e-29
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M LKSL+LAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLG GSGSGS
Sbjct: 1 MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLG----GSGSGS 60
Query: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
GSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSGSGG GGGGSGYGGGYG
Sbjct: 61 GSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYG 120
Query: 121 SGYGGGHGK 130
SGYGGGHGK
Sbjct: 121 SGYGGGHGK 125
BLAST of CmUC06G121060 vs. ExPASy TrEMBL
Match:
A0A6J1E2L6 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430017 PE=4 SV=1)
HSP 1 Score: 141.4 bits (355), Expect = 2.7e-30
Identity = 116/129 (89.92%), Postives = 120/129 (93.02%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M S KSLLLAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLG GSGSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLG----GSGSGS 60
Query: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
GSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG
Sbjct: 61 GSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
Query: 121 SGYGGGHGK 130
SGYGGGHGK
Sbjct: 121 SGYGGGHGK 125
BLAST of CmUC06G121060 vs. ExPASy TrEMBL
Match:
A0A6J1JMR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111485795 PE=4 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M LKSL+LAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLG GSGSGS
Sbjct: 1 MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLG----GSGSGS 60
Query: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
GSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSGSGG GGGGSGYGGGYG
Sbjct: 61 GSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYG 120
Query: 121 SGYGGGHGK 130
SGYGGGHGK
Sbjct: 121 SGYGGGHGK 125
BLAST of CmUC06G121060 vs. ExPASy TrEMBL
Match:
A0A0A0LWP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29
Identity = 115/130 (88.46%), Postives = 123/130 (94.62%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVV-SHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
M SLKSL+LAALL+SSLFVV S SRVARKDLG+DLGGVG+G+GAG+GIGLG GSGSG+G
Sbjct: 1 MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLG--GSGSGAG 60
Query: 61 SGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGY 120
SGSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSGSGGRGG GSGYGGGY
Sbjct: 61 SGSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGY 120
Query: 121 GSGYGGGHGK 130
GSGYGGGHGK
Sbjct: 121 GSGYGGGHGK 128
BLAST of CmUC06G121060 vs. ExPASy TrEMBL
Match:
A0A5A7T0K2 (Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002000 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 2.6e-28
Identity = 113/131 (86.26%), Postives = 120/131 (91.60%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M SLKSL+LAALL+SS FVVS SRVARKDLG+DLGGVG+G+G GIGIGLG GSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLG----GSGSGS 60
Query: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRG--GGGSGYGGG 120
GSGSGSGSGSSSSSSSSSSSSSSGSGS++GSEAGSYAGSRAGSGS GRG GGGSGYGGG
Sbjct: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGG 120
Query: 121 YGSGYGGGHGK 130
YGSGYGGGHGK
Sbjct: 121 YGSGYGGGHGK 127
BLAST of CmUC06G121060 vs. ExPASy TrEMBL
Match:
A0A1S4DUX4 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990650 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 2.6e-28
Identity = 113/131 (86.26%), Postives = 120/131 (91.60%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M SLKSL+LAALL+SS FVVS SRVARKDLG+DLGGVG+G+G GIGIGLG GSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLG----GSGSGS 60
Query: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRG--GGGSGYGGG 120
GSGSGSGSGSSSSSSSSSSSSSSGSGS++GSEAGSYAGSRAGSGS GRG GGGSGYGGG
Sbjct: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGG 120
Query: 121 YGSGYGGGHGK 130
YGSGYGGGHGK
Sbjct: 121 YGSGYGGGHGK 127
BLAST of CmUC06G121060 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 89.4 bits (220), Expect = 2.4e-18
Identity = 89/128 (69.53%), Postives = 103/128 (80.47%), Query Frame = 0
Query: 1 MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
+++ SL+L L++++ +VS SRVARKDLG+DLGG+G GIG GIGIG GGSGSG+G+GS
Sbjct: 4 LNNSSSLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGS 63
Query: 61 GSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
GSG G GS SSSSSSSSSSSSS G G DAGSEAGSYAGS AGSGSGGR G G G G G G
Sbjct: 64 GSG-GGGSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGG 123
Query: 121 SGYGGGHG 129
G+GGG G
Sbjct: 124 GGHGGGGG 130
BLAST of CmUC06G121060 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 88.6 bits (218), Expect = 4.0e-18
Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 0
Query: 8 LLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSG 67
LL ++ISSL +++ SR+ARKDLGIDLGG+G+G+G G+GIGLGG GSGSG+G+GSGSGSG
Sbjct: 9 LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGG-GSGSGAGAGSGSGSG 68
Query: 68 SGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSG 107
S SSSSSSSSSSSSSSGSG AGS AGS+AGSRAGSGSG
Sbjct: 69 SRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038879831.1 | 1.0e-31 | 92.25 | glycine-rich cell wall structural protein 2 [Benincasa hispida] | [more] |
| XP_022921886.1 | 5.6e-30 | 89.92 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] | [more] |
| XP_023515822.1 | 3.6e-29 | 88.37 | counting factor 45-1-like [Cucurbita pepo subsp. pepo] | [more] |
| XP_004146662.1 | 4.8e-29 | 88.46 | glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypoth... | [more] |
| XP_022988598.1 | 4.8e-29 | 88.37 | glycine-rich cell wall structural protein 2-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1E2L6 | 2.7e-30 | 89.92 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
| A0A6J1JMR8 | 2.3e-29 | 88.37 | glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... | [more] |
| A0A0A0LWP0 | 2.3e-29 | 88.46 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1 | [more] |
| A0A5A7T0K2 | 2.6e-28 | 86.26 | Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=... | [more] |
| A0A1S4DUX4 | 2.6e-28 | 86.26 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
