Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACGTTCAAGACAGAAACAGAAGTAAGGAAAACCTATTACCAAGAATCATCCAGCAAAAGAAACGACATAGCTTCCTACACATCACACTCAGATGAAGGTAGCCCAAAACGCACGTATGCGAAAGTCCTTTAACCACAGAGCTCCCTTGCCACAAGCCCAAGGAAGAACATCAATGATATCCTCTACAACAGTGATACCTTAAAAATTGAAGATGAGGAGGATCTTGGTTAGGATCACGCATTCATCGTCATCAGACATTGCTTCCACGATGATTGGACAAAAATATTTGCTAAGCTAAGGGCAAACGAAATCGACATTGAAGTACAAACCATTTCATGCAGAAAAAGCTATTGCTTTCACAAAAGATAAGGAGCAGATCAAGATACTTTGCAGACAGAAACAAGGGTTGGGTTACCGTTGGACACTTCTATGTCAAATTCGAACCTTGGATGGCATCTATACATGCAACCCCGAAACTGATTCCTAGTTATGGTTGATAGACAAAATTTAGGGGTATCCCATTACACGCTTGGAACATGAACACATTTAAACAAATTGGAAATGCTTTGCATACAGAAACAAGGGTTGGGTTACCGTTGGACACTTCTATGTCAAATTTGAACCTTGGATGGCATCTATACATGCAACCCCGAAACTGATTCCTAGTTATGGTGGATAGACAAAATTTAGGGGTATCCCATCACACGCTTGGAACATGAACACATTTAAACAAATTGGAAGTGCTTGTGGAGGTCTTTTGGAATCTCAAAGAAAACTTGGGAGAAGTCCGACATTATTGAGGCCAAGATTAAGATCAGAAAAAACTACATTGGGCTCATTCTAGCAACAATTGCCATTAGTGAGAAAAGGGGAACCGATTCTTGGTTCAAACAATCACAGTCTCGAAAGGAAGGTGGATGATGGAAAGAAATCCCAAGAGTCATGGTATGTTTTCTAGAGAGGCAGCTACAGAATATGATGAATTTGACTCCAAAAAGGAAAGCTACCGTTTTGTCAGAAATATTGCAGTTACTCCTTTAAAGATTCAGCAACCTAACTCCGATCAGCGCAGAACTCCAACGAGGATACCGAACGACAACGACATAAACATCAAGGAAATTTCAAATTCTGATAATGACGGAAGCAATGATAAGATAGCTGAGGTGAAATTCACAGGGAAGAGGAAAGCTTAGCTAAAGAAAAGGGAAGCAAAAAATTAATGGAAATGATGGGAAATGTCAATTCGTGAAGAGGAAAGTCTCCTTTCCCTCTCCTCAAAATAAAACCTACTATTACAATCAAGATTTTACCCCTGCTCGTCCACTCAAATTTAGAAGCCCATTTGACACCAAGGCCCAACCAAAGAAGAAAGACGAAAAGATGGTATACAAGGTCAAAAGCCTAGTTCGAGAGATGACAAACACTATAGCCCAAACAGAAAGACTGATTACAGATGGATCCAATGAACAGGAGATAACGCTAACAGTGGACTTGGGCCCTCTCTCTCCAATGTCGAACACCTTGGTCTCAAGCCCAGACAATCATACTGTCTCAGACATATTGCCATCTCCCACTCAATCAGACATCTTAAACGACAATCTTGCTGACATAAATTATGAGAAGAATGATGATTTGGTAGAAATTGAGCAAAATACCTCTAAAGAAGCTTTTCAAAAAAAAACTTATTGTTTAGCTAAAAAAAAACAACCTCAGACTGACTCCTGTTAATGTACTTGAAATCAGAGAAATAAATCCAATGAGAAGAAAGCCGGAAATAGGGGAAACATAGACAACTTGCACTTGGGGTCTTCTGGTCCTACATGAAGATATTAACTTGGAATGTTCATAGGTTAGGCTCTCCCTCCAAAAGAGCCTTAACAAAAAATGTTATTTCCAGCTATTGTCCTAACTTTATTCTTCTTACTAAAACTTAACTTCAAAATGTCTCCAAAAAATTCATCAAATCAATTTGGAGTTCAGTCAGTATAAAATGGATATTCTTAAAAGCTAATGGCAGATCAGGTGGTATCATCCTTATGTGGGATGATCTTCAACATTCTGTGACAAACTATTTAGAGAAAGAATATATGATTACAGCAAATGTCATTATGTCCGATGGTTTCAGCTGGTGGATTACAGTTATTTATGAGCCTGCCAAAAGAAAAGTTAGAAACAAATTCTTGACTGAGATCTCTAGCATTTACAACACATGTTCTCCCAATTGGTTATTGGGAGGAGACTTCAATGTCGTTGAATGAGATAGTGAAACCTATGCTATTAATCCAGCAAAACACAACATGAAAAATTTCAACTCAAAGTCATCAATTGACTCTGTATTGTTGATCCTCCCCTAACAAATGGCAAATTCACTTGGTCAAACCTCAGATCTCAAGTTGTCTTATCAAGATTGGACCATTTCCTATATACTCTACAGTGGGAAGACAGATTTACCTCTCATTTCTCCAAAACTTTGGCTAGAATCACATCAGACCACTTTCCTCTTATCCTTGAGAATTTGCAACTTTGCTGGCGTACCAATCCTTACCGTTTCAACAACAATAACTTGGAACTATATAGTTTTAACAAAAATGAAAAGGATTGGTGGGATTCTACTAGCCAAATTGGTTTCCTCGGATATTCCTTCAATAGGAGGCTCAAACAACTCTCCAATCAAATAAAAAATTAGCAAGCTAAACAAAAGAAGGTGACAAATGAAGAGAAGAAGACCTAGATTCAGGAAATTGAGAGATTTGACAAGCTCGAGAGCCGGCAAAACCTCAATGAAATTGACAATGCTCGTAAAACATCATTGAAAATTGATCTCAGCACTGAGGCCACTAGAGAAGCTCAATATTGGTCTCAACACCACAAAAGGCTTTGGCTTCATGACGGGGATGAAAACTCAGCTTTTTTTCATAAAGTCTGCACCGTAAGGCAATGATGTAACTTTATCTATGAGATTCTAGAAGAAAATGGGAATAGTCGGATCACAAACAACTCTATTGACGATGTCTTCATTCAACATTTCAAAGACATTTTTGTTGGAAGGCATAAAGAATAGTGGTTTATTGACAACCTTCATTGGCAACCCATTAATCAACCTCAACAATCATATCTTTGCAATCCATTTACAGAGCAAGATACACTTTGCCCTACTTTCTATTGACAATAACAAAGCTTCCGAACCAGATGGCTTCCCTACGGAATTTTTTAAAAGGTCATGGAACACATTCAAGCATGATATATGGAAAGTGTTCCAAGACTTTTTTTCAAAATAGTATCGTGAACAAAAATGTCAATGAAACTTACATTGCGTTGATTGCCAAGAAAGAGAAATGTATTAAAGCAACCGATTATAAACCGATCAGTCTCACAACATCCCTTTACAAGATTATTGCCAAGACACTCGCTGAGAGGCTTAAACAAACGCTTCCATCATCCATATCAGAAAACCAACTGACCTTTGTGAAAAACAAACAGATTACTGATGTTATCCTATGGCAGATGAGGCCACGATTTTTGGAGAATCAAAAAGACAAGAGGCTTCGTTATAAAGCTTGA
mRNA sequence
ATGATCACGTTCAAGACAGAAACAGAAGTAAGGAAAACCTATTACCAAGAATCATCCAGCAAAAGAAACGACATAGCTTCCTACACATCACACTCAGATGAAGGTAGCCCAAAACGCACCCCAAGGAAGAACATCAATGATATCCTCTACAACAGTGATACCTTAAAAATTGAAGATGAGGAGGATCTTGAAAAAGCTATTGCTTTCACAAAAGATAAGGAGCAGATCAAGATACTTTGCAGACAGAAACAAGGGTCTTTTGGAATCTCAAAGAAAACTTGGGAGAAGTCCGACATTATTGAGGCCAAGATTAAGATCAGAAAAAACTACATTGGGCTCATTCTAGCAACAATTGCCATTATCTCGAAAGGAAGGTGGATGATGGAAAGAAATCCCAAGAGTCATGGTATGTTTTCTAGAGAGGCAGCTACAGAATATGATGAATTTGACTCCAAAAAGGAAAGCTACCGTTTTGTCAGAAATATTGCAGTTACTCCTTTAAAGATTCAGCAACCTAACTCCGATCAGCGCAGAACTCCAACGAGGATACCGAACGACAACGACATAAACATCAAGGAAATTTCAAATTCTGATAATGACGGAAGCAATGATAAGATAGCTGAGAGGAAAGTCTCCTTTCCCTCTCCTCAAAATAAAACCTACTATTACAATCAAGATTTTACCCCTGCTCGTCCACTCAAATTTAGAAGCCCATTTGACACCAAGGCCCAACCAAAGAAGAAAGACGAAAAGATGGTATACAAGGTCAAAAGCCTAGTTCGAGAGATGACAAACACTATAGCCCAAACAGAAAGACTGATTACAGATGGATCCAATGAACAGGAGATAACGCTAACAGTGGACTTGGGCCCTCTCTCTCCAATGTCGAACACCTTGGTCTCAAGCCCAGACAATCATACTGTCTCAGACATATTGCCATCTCCCACTCAATCAGACATCTTAAACGACAATCTTGCTGACATAAATTATGAGAAGAATGATGATTTGAGAAATAAATCCAATGAGAAGAAAGCCGGAAATAGGGGAAACATAGACAACTTGCACTTGGGGTCTTCTGTCAGTATAAAATGGATATTCTTAAAAGCTAATGGCAGATCAGGTGGTATCATCCTTATGTGGGATGATCTTCAACATTCTGTGACAAACTATTTAGAGAAAGAATATATGATTACAGCAAATGTCATTATGTCCGATGGTTTCAGCTGGTGGATTACAGTTATTTATGAGCCTGCCAAAAGAAAAGTTAGAAACAAATTCTTGACTGAGATCTCTAGCATTTACAACACATGTTCTCCCAATTGGTTATTGGGAGGAGACTTCAATGAAATTGAGAGATTTGACAAGCTCGAGAGCCGGCAAAACCTCAATGAAATTGACAATGCTCGTAAAACATCATTGAAAATTGATCTCAGCACTGAGGCCACTAGAGAAGCTCAATATTGGTCTCAACACCACAAAAGGCTTTGGCTTCATGACGGGGATGAAAACTCAGCTTTTTTTCATAAAGTCTGCACCAAGAAAATGGGAATAGTCGGATCACAAACAACTCTATTGACGATGTCTTCATTCAACATTTCAAAGACATTTTTGTTGGAAGGCATAAAGAATAGTGGTTTATTGACAACCTTCATTGGCAACCCATTAATCAACCTCAACAATCATATCTTTGCAATCCATTTACAGAGCAAGATACACTTTGCCCTACTTTCTATTGACAATAACAAAGCTTCCGAACCAGATGGCTTCCCTACGGAATTTTTTAAAAGTATCGTGAACAAAAATGTCAATGAAACTTACATTGCGTTGATTGCCAAGAAAGAGAAATGTATTAAAGCAACCGATTATAAACCGATCAGTCTCACAACATCCCTTTACAAGATTATTGCCAAGACACTCGCTGAGAGGCTTAAACAAACGCTTCCATCATCCATATCAGAAAACCAACTGACCTTTGTGAAAAACAAACAGATTACTGATGTTATCCTATGGCAGATGAGGCCACGATTTTTGGAGAATCAAAAAGACAAGAGGCTTCGTTATAAAGCTTGA
Coding sequence (CDS)
ATGATCACGTTCAAGACAGAAACAGAAGTAAGGAAAACCTATTACCAAGAATCATCCAGCAAAAGAAACGACATAGCTTCCTACACATCACACTCAGATGAAGGTAGCCCAAAACGCACCCCAAGGAAGAACATCAATGATATCCTCTACAACAGTGATACCTTAAAAATTGAAGATGAGGAGGATCTTGAAAAAGCTATTGCTTTCACAAAAGATAAGGAGCAGATCAAGATACTTTGCAGACAGAAACAAGGGTCTTTTGGAATCTCAAAGAAAACTTGGGAGAAGTCCGACATTATTGAGGCCAAGATTAAGATCAGAAAAAACTACATTGGGCTCATTCTAGCAACAATTGCCATTATCTCGAAAGGAAGGTGGATGATGGAAAGAAATCCCAAGAGTCATGGTATGTTTTCTAGAGAGGCAGCTACAGAATATGATGAATTTGACTCCAAAAAGGAAAGCTACCGTTTTGTCAGAAATATTGCAGTTACTCCTTTAAAGATTCAGCAACCTAACTCCGATCAGCGCAGAACTCCAACGAGGATACCGAACGACAACGACATAAACATCAAGGAAATTTCAAATTCTGATAATGACGGAAGCAATGATAAGATAGCTGAGAGGAAAGTCTCCTTTCCCTCTCCTCAAAATAAAACCTACTATTACAATCAAGATTTTACCCCTGCTCGTCCACTCAAATTTAGAAGCCCATTTGACACCAAGGCCCAACCAAAGAAGAAAGACGAAAAGATGGTATACAAGGTCAAAAGCCTAGTTCGAGAGATGACAAACACTATAGCCCAAACAGAAAGACTGATTACAGATGGATCCAATGAACAGGAGATAACGCTAACAGTGGACTTGGGCCCTCTCTCTCCAATGTCGAACACCTTGGTCTCAAGCCCAGACAATCATACTGTCTCAGACATATTGCCATCTCCCACTCAATCAGACATCTTAAACGACAATCTTGCTGACATAAATTATGAGAAGAATGATGATTTGAGAAATAAATCCAATGAGAAGAAAGCCGGAAATAGGGGAAACATAGACAACTTGCACTTGGGGTCTTCTGTCAGTATAAAATGGATATTCTTAAAAGCTAATGGCAGATCAGGTGGTATCATCCTTATGTGGGATGATCTTCAACATTCTGTGACAAACTATTTAGAGAAAGAATATATGATTACAGCAAATGTCATTATGTCCGATGGTTTCAGCTGGTGGATTACAGTTATTTATGAGCCTGCCAAAAGAAAAGTTAGAAACAAATTCTTGACTGAGATCTCTAGCATTTACAACACATGTTCTCCCAATTGGTTATTGGGAGGAGACTTCAATGAAATTGAGAGATTTGACAAGCTCGAGAGCCGGCAAAACCTCAATGAAATTGACAATGCTCGTAAAACATCATTGAAAATTGATCTCAGCACTGAGGCCACTAGAGAAGCTCAATATTGGTCTCAACACCACAAAAGGCTTTGGCTTCATGACGGGGATGAAAACTCAGCTTTTTTTCATAAAGTCTGCACCAAGAAAATGGGAATAGTCGGATCACAAACAACTCTATTGACGATGTCTTCATTCAACATTTCAAAGACATTTTTGTTGGAAGGCATAAAGAATAGTGGTTTATTGACAACCTTCATTGGCAACCCATTAATCAACCTCAACAATCATATCTTTGCAATCCATTTACAGAGCAAGATACACTTTGCCCTACTTTCTATTGACAATAACAAAGCTTCCGAACCAGATGGCTTCCCTACGGAATTTTTTAAAAGTATCGTGAACAAAAATGTCAATGAAACTTACATTGCGTTGATTGCCAAGAAAGAGAAATGTATTAAAGCAACCGATTATAAACCGATCAGTCTCACAACATCCCTTTACAAGATTATTGCCAAGACACTCGCTGAGAGGCTTAAACAAACGCTTCCATCATCCATATCAGAAAACCAACTGACCTTTGTGAAAAACAAACAGATTACTGATGTTATCCTATGGCAGATGAGGCCACGATTTTTGGAGAATCAAAAAGACAAGAGGCTTCGTTATAAAGCTTGA
Protein sequence
MITFKTETEVRKTYYQESSSKRNDIASYTSHSDEGSPKRTPRKNINDILYNSDTLKIEDEEDLEKAIAFTKDKEQIKILCRQKQGSFGISKKTWEKSDIIEAKIKIRKNYIGLILATIAIISKGRWMMERNPKSHGMFSREAATEYDEFDSKKESYRFVRNIAVTPLKIQQPNSDQRRTPTRIPNDNDINIKEISNSDNDGSNDKIAERKVSFPSPQNKTYYYNQDFTPARPLKFRSPFDTKAQPKKKDEKMVYKVKSLVREMTNTIAQTERLITDGSNEQEITLTVDLGPLSPMSNTLVSSPDNHTVSDILPSPTQSDILNDNLADINYEKNDDLRNKSNEKKAGNRGNIDNLHLGSSVSIKWIFLKANGRSGGIILMWDDLQHSVTNYLEKEYMITANVIMSDGFSWWITVIYEPAKRKVRNKFLTEISSIYNTCSPNWLLGGDFNEIERFDKLESRQNLNEIDNARKTSLKIDLSTEATREAQYWSQHHKRLWLHDGDENSAFFHKVCTKKMGIVGSQTTLLTMSSFNISKTFLLEGIKNSGLLTTFIGNPLINLNNHIFAIHLQSKIHFALLSIDNNKASEPDGFPTEFFKSIVNKNVNETYIALIAKKEKCIKATDYKPISLTTSLYKIIAKTLAERLKQTLPSSISENQLTFVKNKQITDVILWQMRPRFLENQKDKRLRYKA
Homology
BLAST of CmUC06G119100 vs. NCBI nr
Match:
KAA0045262.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK28688.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 211.1 bits (536), Expect = 3.1e-50
Identity = 210/714 (29.41%), Postives = 322/714 (45.10%), Query Frame = 0
Query: 85 GSFGISKKTWEKSDIIEAKIKIRKNYIGLILATIAII--------------SKGRWMMER 144
G ++++T ++IEA++KIR NY G + A + I S+G+W+MER
Sbjct: 240 GLIKVAEETKTAKNLIEARLKIRYNYSGFLPANVKIFDQEGNKFIVQVVTHSEGKWLMER 299
Query: 145 NPKSHGMFSREAATEYDEFDSKKESYRFVRNIAV---------------TP-----LKIQ 204
N K HG F R+AA +D+F+ + E + F A+ TP LK
Sbjct: 300 NVKLHGTFKRQAAASFDDFNPESEQFFFDGTEAISSDFLSTSSGSRESSTPDQPSALKSV 359
Query: 205 QPNSDQRRT-PTRIPND--NDINIKEISNS---------DNDGSNDK------------- 264
D+ T PT + + ND N+ +N NDG DK
Sbjct: 360 IIKPDRAATSPTPLNEEVVNDSNLHATANKSRLDILSGISNDGLLDKGKQKVDIPTQLNS 419
Query: 265 -----IAERKVSFPSPQNKTYYYNQDFTPARPLKFRSPFDTKAQPKKK--DEKMVYKVKS 324
+RKVSF SP NKT ++N D PA SP + + K+K E+ V K S
Sbjct: 420 AFNFDKPKRKVSFNSPSNKTNFFNPDSAPAN----HSPSLSSPEKKQKVSRERSVKKKSS 479
Query: 325 LVREMTNTIAQTERLITD---------GSNEQEITLTVDLGPLSPMSNTLVSSPDNHTVS 384
++ + LIT ++++ ++LTVDLG L P+ + S D+H+ S
Sbjct: 480 SIQPKSRANQNKGDLITQPIQVVAHDLEASKKRLSLTVDLGDL-PVMDPSKSFEDHHS-S 539
Query: 385 DILPSPTQSDILNDNLADINYEKNDDLRNKSNEKKAGNRGNIDNLHLGSSVSIKWIFLKA 444
D + DI N + E KSN N ++H ++ + K
Sbjct: 540 D---NAEVIDITNTEVVPETPEMKMPDNEKSNSSSEVNYRKPKHVH-----RRRYYYRKK 599
Query: 445 NGRSGGIILMWDDLQHSVTNYLEKEYMITANVIMSDGFSWWITVIYEPAKRKVRNKFLTE 504
+ + + + ++L++ + + S G + V+ N+ +
Sbjct: 600 EEKEKDPDS--ESFKKQLVSWLKENGLKLSTDTDSSGATTSTNVLL--------NQLGSR 659
Query: 505 ISSIYNTCSP---------NWLLGGDFNEIERFDKLESRQNLNEIDNARKTSLKIDLSTE 564
+ S+ N P N E++ DK E L+ ++ R+ +LKIDLS
Sbjct: 660 LKSLANHIKPWQKEKFHSLNSAKESIIREVDSIDKKELDTPLSHEESNRRLALKIDLSDL 719
Query: 565 ATREAQYWSQHHKRLWLHDGDENSAFFHKVCTKKMGIVGSQTTLLTMSSFNISKTFLLE- 624
+ +E+Q+W Q K+LWL +GDENS+FFH++C+ + + F+ E
Sbjct: 720 SLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQ-----------------KRNFIHEI 779
Query: 625 -------GIKNSGLLTTFIGNPLINLNNHIFAIHLQSKIHFALLSIDNNKASEPDGFPTE 684
N+ + T FI + H+ A L+ +I + S D KA PDGFP
Sbjct: 780 QDEEGSTQNTNNNISTAFI--KYFSKWPHLCAPFLEEEIKGVINSFDGKKAPGPDGFPIS 839
Query: 685 FFKS--------------------IVNKNVNETYIALIAKKEKCIKATDYKPISLTTSLY 687
FFKS ++NKN+N TYIALIAKK+ + D++PISLTTS+Y
Sbjct: 840 FFKSFWHLLKEDILDIFKDFFEKGVINKNMNNTYIALIAKKKDYSQPKDFRPISLTTSIY 899
BLAST of CmUC06G119100 vs. NCBI nr
Match:
KAA0039309.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 210.7 bits (535), Expect = 4.0e-50
Identity = 222/905 (24.53%), Postives = 370/905 (40.88%), Query Frame = 0
Query: 85 GSFGISKKTWEKSDIIEAKIKIRKNYIGLILATIAII--------------SKGRWMMER 144
G ++++T ++IEAK+KIR NY G + A + I S+G+W+MER
Sbjct: 316 GLIKVAEETKTARNLIEAKLKIRYNYSGFLPAYVKIFDQEGNKFVVQVVTHSEGKWLMER 375
Query: 145 NPKSHGMFSREAATEYDEFDSKKESYRFVRNIAVTP------------LKIQQPN----- 204
N + HG F R+AA +D+F+ E + F A++P + +QP+
Sbjct: 376 NVRLHGTFKRQAAASFDDFNPDSEQFLFDGLEAISPDLLNTISGSRKSISPEQPSALKSV 435
Query: 205 ----SDQRRTPT----RIPNDNDIN-------IKEISNSDNDGSNDK------------- 264
+ +PT + NDN ++ +K +S NDGS DK
Sbjct: 436 IIKPAKYATSPTTLNEEVVNDNSLHATANKSKLKILSGISNDGSLDKGKQKVDIPSQLTS 495
Query: 265 -----IAERKVSFPSPQNKTYYYNQDFTPARPLKFRSPFDTKAQPKKKDEKMVYKVKSLV 324
+RKVSF SP NKT ++N D PA + ++ + KK +
Sbjct: 496 AFIFYKPKRKVSFNSPSNKTTFFNPDSAPANHSPEKKKRVSRERSVKKKSSTIQPKLRAN 555
Query: 325 REMTNTIAQTERLITD--GSNEQEITLTVDLGPLSPMSNTLVSSPDNH----------TV 384
+ N I Q +++ ++++ ++LTVDLG L P+ + S D+H T
Sbjct: 556 QGKGNLITQPLQVVAHDLDASKKGLSLTVDLGNL-PVLDPSKSFEDHHSSDNAEVIDITN 615
Query: 385 SDILPSPTQSDIL----NDNLADINY--------------EKNDDLRNKSNE-------- 444
++++P + + +++ ++NY +K D ++ ++E
Sbjct: 616 TEVVPETPELKMTDPEKSNSSPEVNYRKQKHSHRRRHYYRKKEDKEKDTNSEAFKNQLVT 675
Query: 445 --KKAGNRGNIDNLHLGSSVSIKWIFLKANGRSGGIILMWDDLQHSVTNYLEKEYMITAN 504
K+ G + +ID G++ S +F + +GGI+++WD HS+ + E ++ ++AN
Sbjct: 676 WLKENGLKLSIDTDSSGATTSTNALFSQLGSSAGGILILWDAQHHSLLSQEEGKFSLSAN 735
Query: 505 VIMSDGFSWWITVIYEPAKRKVRNKFLTEISSIYNTCSPNWLLGGD-------------- 564
S SWW+T +Y P KR+ R ++ ++++ S W++GGD
Sbjct: 736 -FSSFNNSWWLTGLYGPVKRRERLNVWEDLHNLHHLNSSPWIIGGDLNVVRMREESTAVT 795
Query: 565 --------------------------------------FNEIERF--------------- 624
F+ ++RF
Sbjct: 796 FSSHSSNMLNDFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWEILFNPHIT 855
Query: 625 ------------------------------------------------------------ 684
Sbjct: 856 RTLPRPTSDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPGF 915
Query: 685 ---DKLESRQNL----------------------------NEID-------NARKTSLKI 687
+L+S NL NE+D + R+ +LK
Sbjct: 916 FFIQRLKSLANLIKPWQKEKFQSLTSAKENIIREVDSIDKNELDTPLSLEESNRRLALKA 975
BLAST of CmUC06G119100 vs. NCBI nr
Match:
TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 210.7 bits (535), Expect = 4.0e-50
Identity = 222/905 (24.53%), Postives = 370/905 (40.88%), Query Frame = 0
Query: 85 GSFGISKKTWEKSDIIEAKIKIRKNYIGLILATIAII--------------SKGRWMMER 144
G ++++T ++IEAK+KIR NY G + A + I S+G+W+MER
Sbjct: 316 GLIKVAEETKTARNLIEAKLKIRYNYSGFLPAYVKIFDQEGNKFVVQVVTHSEGKWLMER 375
Query: 145 NPKSHGMFSREAATEYDEFDSKKESYRFVRNIAVTP------------LKIQQPN----- 204
N + HG F R+AA +D+F+ E + F A++P + +QP+
Sbjct: 376 NVRLHGTFKRQAAASFDDFNPDSEQFLFDGLEAISPDLLNTISGSRKSISPEQPSALKSV 435
Query: 205 ----SDQRRTPT----RIPNDNDIN-------IKEISNSDNDGSNDK------------- 264
+ +PT + NDN ++ +K +S NDGS DK
Sbjct: 436 IIKPAKYATSPTTLNEEVVNDNSLHATANKSKLKILSGISNDGSLDKGKQKVDIPSQLTS 495
Query: 265 -----IAERKVSFPSPQNKTYYYNQDFTPARPLKFRSPFDTKAQPKKKDEKMVYKVKSLV 324
+RKVSF SP NKT ++N D PA + ++ + KK +
Sbjct: 496 AFIFYKPKRKVSFNSPSNKTTFFNPDSAPANHSPEKKKRVSRERSVKKKSSTIQPKLRAN 555
Query: 325 REMTNTIAQTERLITD--GSNEQEITLTVDLGPLSPMSNTLVSSPDNH----------TV 384
+ N I Q +++ ++++ ++LTVDLG L P+ + S D+H T
Sbjct: 556 QGKGNLITQPLQVVAHDLDASKKGLSLTVDLGNL-PVLDPSKSFEDHHSSDNAEVIDITN 615
Query: 385 SDILPSPTQSDIL----NDNLADINY--------------EKNDDLRNKSNE-------- 444
++++P + + +++ ++NY +K D ++ ++E
Sbjct: 616 TEVVPETPELKMTDPEKSNSSPEVNYRKQKHSHRRRHYYRKKEDKEKDTNSEAFKNQLVT 675
Query: 445 --KKAGNRGNIDNLHLGSSVSIKWIFLKANGRSGGIILMWDDLQHSVTNYLEKEYMITAN 504
K+ G + +ID G++ S +F + +GGI+++WD HS+ + E ++ ++AN
Sbjct: 676 WLKENGLKLSIDTDSSGATTSTNALFSQLGSSAGGILILWDAQHHSLLSQEEGKFSLSAN 735
Query: 505 VIMSDGFSWWITVIYEPAKRKVRNKFLTEISSIYNTCSPNWLLGGD-------------- 564
S SWW+T +Y P KR+ R ++ ++++ S W++GGD
Sbjct: 736 -FSSFNNSWWLTGLYGPVKRRERLNVWEDLHNLHHLNSSPWIIGGDLNVVRMREESTAVT 795
Query: 565 --------------------------------------FNEIERF--------------- 624
F+ ++RF
Sbjct: 796 FSSHSSNMLNDFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWEILFNPHIT 855
Query: 625 ------------------------------------------------------------ 684
Sbjct: 856 RTLPRPTSDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPGF 915
Query: 685 ---DKLESRQNL----------------------------NEID-------NARKTSLKI 687
+L+S NL NE+D + R+ +LK
Sbjct: 916 FFIQRLKSLANLIKPWQKEKFQSLTSAKENIIREVDSIDKNELDTPLSLEESNRRLALKA 975
BLAST of CmUC06G119100 vs. NCBI nr
Match:
TYK29577.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 192.2 bits (487), Expect = 1.5e-44
Identity = 184/688 (26.74%), Postives = 285/688 (41.42%), Query Frame = 0
Query: 203 NDKIA----ERKVSFPSPQNKTYYYNQDFTPARPLKFRSPFD------TKAQPKKKDEKM 262
N KI+ +RKVSF SP+N+T+ ++ P + LK SP +P + +K
Sbjct: 16 NQKISPINTKRKVSFSSPKNETFLFSAHSAPTKTLKLGSPMSYAKMEAKSKRPTQSIKKK 75
Query: 263 VYKVK--SLVREMTNTIAQTERLITDGSNEQEITLTVDLGPLSPMSNTLVSSPDNHTVSD 322
VY+VK S+ RE T Q ++ + + E L VDLG +SP+S+T S P++ +
Sbjct: 76 VYRVKSRSMERETPQTSRQKDK---EKIDPNEFELVVDLGHISPLSDTDFSCPESPSYIP 135
Query: 323 ILPSPTQSDILNDNLA--------DINYEKNDDLRNKSNEKKAGNRGNIDNLHLGSSVSI 382
SPT+SDI+ D+LA D +K ++LR ++ + + + + + +++ +
Sbjct: 136 SPTSPTESDIVKDSLASMMTCAHEDREKKKKENLREETEDDEVSFKRKLTDWLKENNLRL 195
Query: 383 KWIFLKANGRSGGIILMWDDLQHSVTNYLEK--EYMITANVIMSDGFSWWITVIYEPAKR 442
F N + + +D S+ N + ++ V ++G SWW++ IY PAKR
Sbjct: 196 AADF---NSQFNSVT---NDRMISILNGPPNVGAFSVSIQVGSNNGASWWLSAIYGPAKR 255
Query: 443 KVRNKFLTEISSIYNTCSPNWLLGGDFN-------------------------------- 502
K R F E+ ++ + C P W+LGGDFN
Sbjct: 256 KNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKRFNTFISNCNLID 315
Query: 503 ------------------------------------------------------------ 562
Sbjct: 316 PPLTNAKFTWSNLRAQATLSRLDRFLFSTHWENIFPGHTSKVLTRTTSDHFPIVLESSTI 375
Query: 563 ------------------------------------------------------------ 622
Sbjct: 376 SWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMHRLKQLALKIKAWGREKKG 435
Query: 623 -----------EIERFDKLESRQNLNEIDNARKTSLKIDLSTEATREAQYWSQHHKRLWL 670
EI+ DKLE+ + EI ++ +LK DLS EAQ W+Q KR+W+
Sbjct: 436 KNEASKKAWIKEIDLIDKLEAEGSATEIHREKRIALKADLSQITLTEAQIWAQKCKRIWV 495
BLAST of CmUC06G119100 vs. NCBI nr
Match:
TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 191.4 bits (485), Expect = 2.5e-44
Identity = 214/889 (24.07%), Postives = 342/889 (38.47%), Query Frame = 0
Query: 85 GSFGISKKTWEKSDIIEAKIKIRKNYIGLILATIAII--------------SKGRWMMER 144
G ++K+T + +I+AKIK+R NYIG + A+I I ++ RW++ER
Sbjct: 295 GFLDVAKETMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVER 354
Query: 145 NPKSHGMFSREAATEYDEFDSKKESYRFVRNIAVTPLKIQQ------PNSDQR----RTP 204
N + HG F +AA E+D+ + E+Y + A+ P + NSD+ T
Sbjct: 355 NVRVHGSFRTKAADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQ 414
Query: 205 TRIPNDNDINIKEISNSDNDGSNDK---------------------IAERKVSFPSPQN- 264
+ N ++ +D +K I+ RKVSF SP
Sbjct: 415 AKKNNSSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGI 474
Query: 265 KTYYYNQDF-TPARPLK---FRSPFDTKAQPKKKDE-KMVYKVKSLVREMTNTIAQTERL 324
++ N + T + L+ F+ + P++K + K+ Y++K +E T L
Sbjct: 475 QSNSSNTEINTKGKSLEISTINDQFEKRWSPRQKTKTKLTYRIKKDPQESTED--HKLSL 534
Query: 325 ITDGSNEQEITLTVDLGPLSPMSNTLVSSPDNHTVSDILPSPTQSDILNDNLADINYEKN 384
G +++ L+VD+GP+SP+ +++ S +NH + D N+ D N +
Sbjct: 535 KETGEGSKQMNLSVDMGPISPL-ESMIQSENNHGL----------DTFNNQTPDGNSKST 594
Query: 385 DDLRNK---------SNEKKAGNR----GNIDNLHLGSSVSIK-------WIFLKAN--- 444
D K +++ K+ +R GN + GS + I I+LK N
Sbjct: 595 DSAEAKNLTVSVKEGADQNKSASRSTAEGNSKDAKTGSELEIDRAFKEKLVIWLKENELK 654
Query: 445 --------------------------------GRSGGIILMWDDLQHSVTNYLEKEYMIT 504
G GGI+++WDD V + Y I+
Sbjct: 655 LSPKYTNDVPSSSYFPVIVSDQNMDIAGHGPLGDKGGILVLWDDTNFKVNDIKVGNYSIS 714
Query: 505 ANVIMSDGFSWWITVIYEPAKRKVRNKFLTEISSIYNTCSPNWLLGGDFN---------- 564
N++ ++G +WW+T +Y P K R K E+ + + C PNWL+ GDFN
Sbjct: 715 LNILNTNG-NWWLTSVYGPYKYNDRTKLWPELEILQSLCLPNWLIAGDFNIVRWERETNA 774
Query: 565 ------------------------------------------------------------ 624
Sbjct: 775 KSLDKRNMANFNNFISVNELIDPPPLNNNFTWSNLRVNPTYSRLDRFLLSKGWENAFGLH 834
Query: 625 ------------------------------------------------------------ 670
Sbjct: 835 TSRTLERNISDHFPILLESPQIKWGPCPFRLNNSSLRDKEFQKNFINWWNSSKQAGFPGY 894
BLAST of CmUC06G119100 vs. ExPASy TrEMBL
Match:
A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)
HSP 1 Score: 211.1 bits (536), Expect = 1.5e-50
Identity = 210/714 (29.41%), Postives = 322/714 (45.10%), Query Frame = 0
Query: 85 GSFGISKKTWEKSDIIEAKIKIRKNYIGLILATIAII--------------SKGRWMMER 144
G ++++T ++IEA++KIR NY G + A + I S+G+W+MER
Sbjct: 240 GLIKVAEETKTAKNLIEARLKIRYNYSGFLPANVKIFDQEGNKFIVQVVTHSEGKWLMER 299
Query: 145 NPKSHGMFSREAATEYDEFDSKKESYRFVRNIAV---------------TP-----LKIQ 204
N K HG F R+AA +D+F+ + E + F A+ TP LK
Sbjct: 300 NVKLHGTFKRQAAASFDDFNPESEQFFFDGTEAISSDFLSTSSGSRESSTPDQPSALKSV 359
Query: 205 QPNSDQRRT-PTRIPND--NDINIKEISNS---------DNDGSNDK------------- 264
D+ T PT + + ND N+ +N NDG DK
Sbjct: 360 IIKPDRAATSPTPLNEEVVNDSNLHATANKSRLDILSGISNDGLLDKGKQKVDIPTQLNS 419
Query: 265 -----IAERKVSFPSPQNKTYYYNQDFTPARPLKFRSPFDTKAQPKKK--DEKMVYKVKS 324
+RKVSF SP NKT ++N D PA SP + + K+K E+ V K S
Sbjct: 420 AFNFDKPKRKVSFNSPSNKTNFFNPDSAPAN----HSPSLSSPEKKQKVSRERSVKKKSS 479
Query: 325 LVREMTNTIAQTERLITD---------GSNEQEITLTVDLGPLSPMSNTLVSSPDNHTVS 384
++ + LIT ++++ ++LTVDLG L P+ + S D+H+ S
Sbjct: 480 SIQPKSRANQNKGDLITQPIQVVAHDLEASKKRLSLTVDLGDL-PVMDPSKSFEDHHS-S 539
Query: 385 DILPSPTQSDILNDNLADINYEKNDDLRNKSNEKKAGNRGNIDNLHLGSSVSIKWIFLKA 444
D + DI N + E KSN N ++H ++ + K
Sbjct: 540 D---NAEVIDITNTEVVPETPEMKMPDNEKSNSSSEVNYRKPKHVH-----RRRYYYRKK 599
Query: 445 NGRSGGIILMWDDLQHSVTNYLEKEYMITANVIMSDGFSWWITVIYEPAKRKVRNKFLTE 504
+ + + + ++L++ + + S G + V+ N+ +
Sbjct: 600 EEKEKDPDS--ESFKKQLVSWLKENGLKLSTDTDSSGATTSTNVLL--------NQLGSR 659
Query: 505 ISSIYNTCSP---------NWLLGGDFNEIERFDKLESRQNLNEIDNARKTSLKIDLSTE 564
+ S+ N P N E++ DK E L+ ++ R+ +LKIDLS
Sbjct: 660 LKSLANHIKPWQKEKFHSLNSAKESIIREVDSIDKKELDTPLSHEESNRRLALKIDLSDL 719
Query: 565 ATREAQYWSQHHKRLWLHDGDENSAFFHKVCTKKMGIVGSQTTLLTMSSFNISKTFLLE- 624
+ +E+Q+W Q K+LWL +GDENS+FFH++C+ + + F+ E
Sbjct: 720 SLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQ-----------------KRNFIHEI 779
Query: 625 -------GIKNSGLLTTFIGNPLINLNNHIFAIHLQSKIHFALLSIDNNKASEPDGFPTE 684
N+ + T FI + H+ A L+ +I + S D KA PDGFP
Sbjct: 780 QDEEGSTQNTNNNISTAFI--KYFSKWPHLCAPFLEEEIKGVINSFDGKKAPGPDGFPIS 839
Query: 685 FFKS--------------------IVNKNVNETYIALIAKKEKCIKATDYKPISLTTSLY 687
FFKS ++NKN+N TYIALIAKK+ + D++PISLTTS+Y
Sbjct: 840 FFKSFWHLLKEDILDIFKDFFEKGVINKNMNNTYIALIAKKKDYSQPKDFRPISLTTSIY 899
BLAST of CmUC06G119100 vs. ExPASy TrEMBL
Match:
A0A5A7TDG1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001050 PE=4 SV=1)
HSP 1 Score: 210.7 bits (535), Expect = 2.0e-50
Identity = 222/905 (24.53%), Postives = 370/905 (40.88%), Query Frame = 0
Query: 85 GSFGISKKTWEKSDIIEAKIKIRKNYIGLILATIAII--------------SKGRWMMER 144
G ++++T ++IEAK+KIR NY G + A + I S+G+W+MER
Sbjct: 316 GLIKVAEETKTARNLIEAKLKIRYNYSGFLPAYVKIFDQEGNKFVVQVVTHSEGKWLMER 375
Query: 145 NPKSHGMFSREAATEYDEFDSKKESYRFVRNIAVTP------------LKIQQPN----- 204
N + HG F R+AA +D+F+ E + F A++P + +QP+
Sbjct: 376 NVRLHGTFKRQAAASFDDFNPDSEQFLFDGLEAISPDLLNTISGSRKSISPEQPSALKSV 435
Query: 205 ----SDQRRTPT----RIPNDNDIN-------IKEISNSDNDGSNDK------------- 264
+ +PT + NDN ++ +K +S NDGS DK
Sbjct: 436 IIKPAKYATSPTTLNEEVVNDNSLHATANKSKLKILSGISNDGSLDKGKQKVDIPSQLTS 495
Query: 265 -----IAERKVSFPSPQNKTYYYNQDFTPARPLKFRSPFDTKAQPKKKDEKMVYKVKSLV 324
+RKVSF SP NKT ++N D PA + ++ + KK +
Sbjct: 496 AFIFYKPKRKVSFNSPSNKTTFFNPDSAPANHSPEKKKRVSRERSVKKKSSTIQPKLRAN 555
Query: 325 REMTNTIAQTERLITD--GSNEQEITLTVDLGPLSPMSNTLVSSPDNH----------TV 384
+ N I Q +++ ++++ ++LTVDLG L P+ + S D+H T
Sbjct: 556 QGKGNLITQPLQVVAHDLDASKKGLSLTVDLGNL-PVLDPSKSFEDHHSSDNAEVIDITN 615
Query: 385 SDILPSPTQSDIL----NDNLADINY--------------EKNDDLRNKSNE-------- 444
++++P + + +++ ++NY +K D ++ ++E
Sbjct: 616 TEVVPETPELKMTDPEKSNSSPEVNYRKQKHSHRRRHYYRKKEDKEKDTNSEAFKNQLVT 675
Query: 445 --KKAGNRGNIDNLHLGSSVSIKWIFLKANGRSGGIILMWDDLQHSVTNYLEKEYMITAN 504
K+ G + +ID G++ S +F + +GGI+++WD HS+ + E ++ ++AN
Sbjct: 676 WLKENGLKLSIDTDSSGATTSTNALFSQLGSSAGGILILWDAQHHSLLSQEEGKFSLSAN 735
Query: 505 VIMSDGFSWWITVIYEPAKRKVRNKFLTEISSIYNTCSPNWLLGGD-------------- 564
S SWW+T +Y P KR+ R ++ ++++ S W++GGD
Sbjct: 736 -FSSFNNSWWLTGLYGPVKRRERLNVWEDLHNLHHLNSSPWIIGGDLNVVRMREESTAVT 795
Query: 565 --------------------------------------FNEIERF--------------- 624
F+ ++RF
Sbjct: 796 FSSHSSNMLNDFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWEILFNPHIT 855
Query: 625 ------------------------------------------------------------ 684
Sbjct: 856 RTLPRPTSDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPGF 915
Query: 685 ---DKLESRQNL----------------------------NEID-------NARKTSLKI 687
+L+S NL NE+D + R+ +LK
Sbjct: 916 FFIQRLKSLANLIKPWQKEKFQSLTSAKENIIREVDSIDKNELDTPLSLEESNRRLALKA 975
BLAST of CmUC06G119100 vs. ExPASy TrEMBL
Match:
A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)
HSP 1 Score: 210.7 bits (535), Expect = 2.0e-50
Identity = 222/905 (24.53%), Postives = 370/905 (40.88%), Query Frame = 0
Query: 85 GSFGISKKTWEKSDIIEAKIKIRKNYIGLILATIAII--------------SKGRWMMER 144
G ++++T ++IEAK+KIR NY G + A + I S+G+W+MER
Sbjct: 316 GLIKVAEETKTARNLIEAKLKIRYNYSGFLPAYVKIFDQEGNKFVVQVVTHSEGKWLMER 375
Query: 145 NPKSHGMFSREAATEYDEFDSKKESYRFVRNIAVTP------------LKIQQPN----- 204
N + HG F R+AA +D+F+ E + F A++P + +QP+
Sbjct: 376 NVRLHGTFKRQAAASFDDFNPDSEQFLFDGLEAISPDLLNTISGSRKSISPEQPSALKSV 435
Query: 205 ----SDQRRTPT----RIPNDNDIN-------IKEISNSDNDGSNDK------------- 264
+ +PT + NDN ++ +K +S NDGS DK
Sbjct: 436 IIKPAKYATSPTTLNEEVVNDNSLHATANKSKLKILSGISNDGSLDKGKQKVDIPSQLTS 495
Query: 265 -----IAERKVSFPSPQNKTYYYNQDFTPARPLKFRSPFDTKAQPKKKDEKMVYKVKSLV 324
+RKVSF SP NKT ++N D PA + ++ + KK +
Sbjct: 496 AFIFYKPKRKVSFNSPSNKTTFFNPDSAPANHSPEKKKRVSRERSVKKKSSTIQPKLRAN 555
Query: 325 REMTNTIAQTERLITD--GSNEQEITLTVDLGPLSPMSNTLVSSPDNH----------TV 384
+ N I Q +++ ++++ ++LTVDLG L P+ + S D+H T
Sbjct: 556 QGKGNLITQPLQVVAHDLDASKKGLSLTVDLGNL-PVLDPSKSFEDHHSSDNAEVIDITN 615
Query: 385 SDILPSPTQSDIL----NDNLADINY--------------EKNDDLRNKSNE-------- 444
++++P + + +++ ++NY +K D ++ ++E
Sbjct: 616 TEVVPETPELKMTDPEKSNSSPEVNYRKQKHSHRRRHYYRKKEDKEKDTNSEAFKNQLVT 675
Query: 445 --KKAGNRGNIDNLHLGSSVSIKWIFLKANGRSGGIILMWDDLQHSVTNYLEKEYMITAN 504
K+ G + +ID G++ S +F + +GGI+++WD HS+ + E ++ ++AN
Sbjct: 676 WLKENGLKLSIDTDSSGATTSTNALFSQLGSSAGGILILWDAQHHSLLSQEEGKFSLSAN 735
Query: 505 VIMSDGFSWWITVIYEPAKRKVRNKFLTEISSIYNTCSPNWLLGGD-------------- 564
S SWW+T +Y P KR+ R ++ ++++ S W++GGD
Sbjct: 736 -FSSFNNSWWLTGLYGPVKRRERLNVWEDLHNLHHLNSSPWIIGGDLNVVRMREESTAVT 795
Query: 565 --------------------------------------FNEIERF--------------- 624
F+ ++RF
Sbjct: 796 FSSHSSNMLNDFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWEILFNPHIT 855
Query: 625 ------------------------------------------------------------ 684
Sbjct: 856 RTLPRPTSDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPGF 915
Query: 685 ---DKLESRQNL----------------------------NEID-------NARKTSLKI 687
+L+S NL NE+D + R+ +LK
Sbjct: 916 FFIQRLKSLANLIKPWQKEKFQSLTSAKENIIREVDSIDKNELDTPLSLEESNRRLALKA 975
BLAST of CmUC06G119100 vs. ExPASy TrEMBL
Match:
A0A5D3E0F6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001830 PE=4 SV=1)
HSP 1 Score: 192.2 bits (487), Expect = 7.2e-45
Identity = 184/688 (26.74%), Postives = 285/688 (41.42%), Query Frame = 0
Query: 203 NDKIA----ERKVSFPSPQNKTYYYNQDFTPARPLKFRSPFD------TKAQPKKKDEKM 262
N KI+ +RKVSF SP+N+T+ ++ P + LK SP +P + +K
Sbjct: 16 NQKISPINTKRKVSFSSPKNETFLFSAHSAPTKTLKLGSPMSYAKMEAKSKRPTQSIKKK 75
Query: 263 VYKVK--SLVREMTNTIAQTERLITDGSNEQEITLTVDLGPLSPMSNTLVSSPDNHTVSD 322
VY+VK S+ RE T Q ++ + + E L VDLG +SP+S+T S P++ +
Sbjct: 76 VYRVKSRSMERETPQTSRQKDK---EKIDPNEFELVVDLGHISPLSDTDFSCPESPSYIP 135
Query: 323 ILPSPTQSDILNDNLA--------DINYEKNDDLRNKSNEKKAGNRGNIDNLHLGSSVSI 382
SPT+SDI+ D+LA D +K ++LR ++ + + + + + +++ +
Sbjct: 136 SPTSPTESDIVKDSLASMMTCAHEDREKKKKENLREETEDDEVSFKRKLTDWLKENNLRL 195
Query: 383 KWIFLKANGRSGGIILMWDDLQHSVTNYLEK--EYMITANVIMSDGFSWWITVIYEPAKR 442
F N + + +D S+ N + ++ V ++G SWW++ IY PAKR
Sbjct: 196 AADF---NSQFNSVT---NDRMISILNGPPNVGAFSVSIQVGSNNGASWWLSAIYGPAKR 255
Query: 443 KVRNKFLTEISSIYNTCSPNWLLGGDFN-------------------------------- 502
K R F E+ ++ + C P W+LGGDFN
Sbjct: 256 KNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKRFNTFISNCNLID 315
Query: 503 ------------------------------------------------------------ 562
Sbjct: 316 PPLTNAKFTWSNLRAQATLSRLDRFLFSTHWENIFPGHTSKVLTRTTSDHFPIVLESSTI 375
Query: 563 ------------------------------------------------------------ 622
Sbjct: 376 SWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMHRLKQLALKIKAWGREKKG 435
Query: 623 -----------EIERFDKLESRQNLNEIDNARKTSLKIDLSTEATREAQYWSQHHKRLWL 670
EI+ DKLE+ + EI ++ +LK DLS EAQ W+Q KR+W+
Sbjct: 436 KNEASKKAWIKEIDLIDKLEAEGSATEIHREKRIALKADLSQITLTEAQIWAQKCKRIWV 495
BLAST of CmUC06G119100 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 191.4 bits (485), Expect = 1.2e-44
Identity = 214/889 (24.07%), Postives = 342/889 (38.47%), Query Frame = 0
Query: 85 GSFGISKKTWEKSDIIEAKIKIRKNYIGLILATIAII--------------SKGRWMMER 144
G ++K+T + +I+AKIK+R NYIG + A+I I ++ RW++ER
Sbjct: 295 GFLDVAKETMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVER 354
Query: 145 NPKSHGMFSREAATEYDEFDSKKESYRFVRNIAVTPLKIQQ------PNSDQR----RTP 204
N + HG F +AA E+D+ + E+Y + A+ P + NSD+ T
Sbjct: 355 NVRVHGSFRTKAADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQ 414
Query: 205 TRIPNDNDINIKEISNSDNDGSNDK---------------------IAERKVSFPSPQN- 264
+ N ++ +D +K I+ RKVSF SP
Sbjct: 415 AKKNNSSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGI 474
Query: 265 KTYYYNQDF-TPARPLK---FRSPFDTKAQPKKKDE-KMVYKVKSLVREMTNTIAQTERL 324
++ N + T + L+ F+ + P++K + K+ Y++K +E T L
Sbjct: 475 QSNSSNTEINTKGKSLEISTINDQFEKRWSPRQKTKTKLTYRIKKDPQESTED--HKLSL 534
Query: 325 ITDGSNEQEITLTVDLGPLSPMSNTLVSSPDNHTVSDILPSPTQSDILNDNLADINYEKN 384
G +++ L+VD+GP+SP+ +++ S +NH + D N+ D N +
Sbjct: 535 KETGEGSKQMNLSVDMGPISPL-ESMIQSENNHGL----------DTFNNQTPDGNSKST 594
Query: 385 DDLRNK---------SNEKKAGNR----GNIDNLHLGSSVSIK-------WIFLKAN--- 444
D K +++ K+ +R GN + GS + I I+LK N
Sbjct: 595 DSAEAKNLTVSVKEGADQNKSASRSTAEGNSKDAKTGSELEIDRAFKEKLVIWLKENELK 654
Query: 445 --------------------------------GRSGGIILMWDDLQHSVTNYLEKEYMIT 504
G GGI+++WDD V + Y I+
Sbjct: 655 LSPKYTNDVPSSSYFPVIVSDQNMDIAGHGPLGDKGGILVLWDDTNFKVNDIKVGNYSIS 714
Query: 505 ANVIMSDGFSWWITVIYEPAKRKVRNKFLTEISSIYNTCSPNWLLGGDFN---------- 564
N++ ++G +WW+T +Y P K R K E+ + + C PNWL+ GDFN
Sbjct: 715 LNILNTNG-NWWLTSVYGPYKYNDRTKLWPELEILQSLCLPNWLIAGDFNIVRWERETNA 774
Query: 565 ------------------------------------------------------------ 624
Sbjct: 775 KSLDKRNMANFNNFISVNELIDPPPLNNNFTWSNLRVNPTYSRLDRFLLSKGWENAFGLH 834
Query: 625 ------------------------------------------------------------ 670
Sbjct: 835 TSRTLERNISDHFPILLESPQIKWGPCPFRLNNSSLRDKEFQKNFINWWNSSKQAGFPGY 894
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0045262.1 | 3.1e-50 | 29.41 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK286... | [more] |
KAA0039309.1 | 4.0e-50 | 24.53 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK00493.1 | 4.0e-50 | 24.53 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK29577.1 | 1.5e-44 | 26.74 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK08190.1 | 2.5e-44 | 24.07 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DZ07 | 1.5e-50 | 29.41 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TDG1 | 2.0e-50 | 24.53 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3BL61 | 2.0e-50 | 24.53 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3E0F6 | 7.2e-45 | 26.74 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7US62 | 1.2e-44 | 24.07 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |