Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTCCCTTCCATTACTTCACAATCCAAACCCAAATGTCCACCGCCAATTACAAGCAAAAAACCCAAGTTACAGAGAGAGTTGCAAGGACTTCATTCCCCAATACACTACAATAAGACGACATTGGCTATTAGGGAGGGATCTTTTGTATCTTAATGAAATTTATATCATGGAATGTTCACGGAATCAATTCTTGGAGAAAATGTACTTTGGTTAAAAAGCTCATTCAACAACATAATACGGGTATTGTTCTTTTACAAGAAACAAAGCTGTCATCTGTGGATTCCCATTTGATTAAATCAATATGGAGCTCTACTTACATTGGTTGGACATCCTTGTATGCTATTGATTCTTCGGCGGGTATTCTCATTTTTTGGAGTGAATCAGACTTTTCTATCAATGATGTCATTCAAGTTAATTTTTCTGTCTCTATTCAAGTAACATTGGCTGATGGTTATTCTTTTTGGCTTTGCGCTGTTTATTGTCTGACCGATAATGTCTACCATGCTGATTTTTGGCAAAAGTTTGATGATTTGGCGTGTTTGGGAGGAGATAACTGGGTTATTGGTTTGGAAGGAAATCTCATGATCGAACGATATCATCCAATATTCGTGCATTTAATCGTTGGATATAACTACCAGCTCCATGATATCCCTTTATTTAATGGCTGCTTTACTTGGTCTAGCTTTGGCTCTATTCAATACATGTCCCTCCTTGACAGATTTTTTATCATGAAAAATTGTCTACAGAAGTTCGGAGTTGTTACTCTTAAAAGTCTAGAAAGAACTACATCAGATCACTTTCCTTTGGATTTAACATGA
mRNA sequence
ATGGCCGTCCCTTCCATTACTTCACAATCCAAACCCAAATGTCCACCGCCAATTACAAGCAAAAAACCCAAGTTACAGAGAGAGTTGCAAGGACTTCATTCCCCAATACACTACAATAAGACGACATTGGCTATTAGGGAGGGATCTTTTCTCATTCAACAACATAATACGGGTATTGTTCTTTTACAAGAAACAAAGCTGTCATCTGTGGATTCCCATTTGATTAAATCAATATGGAGCTCTACTTACATTGGTTGGACATCCTTGTATGCTATTGATTCTTCGGCGGGTATTCTCATTTTTTGGAGTGAATCAGACTTTTCTATCAATGATGTCATTCAAGTTAATTTTTCTGTCTCTATTCAAGTAACATTGGCTGATGGTTATTCTTTTTGGCTTTGCGCTGTTTATTGTCTGACCGATAATGTCTACCATGCTGATTTTTGGCAAAAGTTTGATGATTTGGCGTGTTTGGGAGGAGATAACTGGGTTATTGGTTTGGAAGGAAATCTCATGATCGAACGATATCATCCAATATTCGTGCATTTAATCGTTGGATATAACTACCAGCTCCATGATATCCCTTTATTTAATGGCTGCTTTACTTGGTCTAGCTTTGGCTCTATTCAATACATGTCCCTCCTTGACAGATTTTTTATCATGAAAAATTGTCTACAGAAGTTCGGAGTTGTTACTCTTAAAAGTCTAGAAAGAACTACATCAGATCACTTTCCTTTGGATTTAACATGA
Coding sequence (CDS)
ATGGCCGTCCCTTCCATTACTTCACAATCCAAACCCAAATGTCCACCGCCAATTACAAGCAAAAAACCCAAGTTACAGAGAGAGTTGCAAGGACTTCATTCCCCAATACACTACAATAAGACGACATTGGCTATTAGGGAGGGATCTTTTCTCATTCAACAACATAATACGGGTATTGTTCTTTTACAAGAAACAAAGCTGTCATCTGTGGATTCCCATTTGATTAAATCAATATGGAGCTCTACTTACATTGGTTGGACATCCTTGTATGCTATTGATTCTTCGGCGGGTATTCTCATTTTTTGGAGTGAATCAGACTTTTCTATCAATGATGTCATTCAAGTTAATTTTTCTGTCTCTATTCAAGTAACATTGGCTGATGGTTATTCTTTTTGGCTTTGCGCTGTTTATTGTCTGACCGATAATGTCTACCATGCTGATTTTTGGCAAAAGTTTGATGATTTGGCGTGTTTGGGAGGAGATAACTGGGTTATTGGTTTGGAAGGAAATCTCATGATCGAACGATATCATCCAATATTCGTGCATTTAATCGTTGGATATAACTACCAGCTCCATGATATCCCTTTATTTAATGGCTGCTTTACTTGGTCTAGCTTTGGCTCTATTCAATACATGTCCCTCCTTGACAGATTTTTTATCATGAAAAATTGTCTACAGAAGTTCGGAGTTGTTACTCTTAAAAGTCTAGAAAGAACTACATCAGATCACTTTCCTTTGGATTTAACATGA
Protein sequence
MAVPSITSQSKPKCPPPITSKKPKLQRELQGLHSPIHYNKTTLAIREGSFLIQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLMIERYHPIFVHLIVGYNYQLHDIPLFNGCFTWSSFGSIQYMSLLDRFFIMKNCLQKFGVVTLKSLERTTSDHFPLDLT
Homology
BLAST of CmUC06G117930 vs. NCBI nr
Match:
XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])
HSP 1 Score: 129.4 bits (324), Expect = 4.3e-26
Identity = 73/206 (35.44%), Postives = 118/206 (57.28%), Query Frame = 0
Query: 52 IQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSIND 111
I + N +V+LQETKLS +D ++KS+WS+ I W++L A ++GILI W++ D +
Sbjct: 24 ISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSALDASGMASGILILWNDPDLKAAE 83
Query: 112 VIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNL 171
+I+ FS++I L+DG+ FW+ +Y + +H FWQ+ DL+ L ++W+ L G+
Sbjct: 84 MIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLFWQELLDLSDLCENHWI--LAGDF 143
Query: 172 MIERY-------HPIFVHLIVGYNY----QLHDIPLFNGCFTWSSFGSIQYMSLLDRFFI 231
+ R+ P+ + + ++ L D+PL NG TWS S SL+D F +
Sbjct: 144 NVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWSRNTS---FSLIDCFLL 203
Query: 232 MKNCLQKFGVVTLKSLERTTSDHFPL 247
C+ K G+ K + RTTSDHFP+
Sbjct: 204 TNGCIDKLGMPIAKRMTRTTSDHFPI 224
BLAST of CmUC06G117930 vs. NCBI nr
Match:
XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])
HSP 1 Score: 108.2 bits (269), Expect = 1.0e-19
Identity = 68/197 (34.52%), Postives = 100/197 (50.76%), Query Frame = 0
Query: 59 IVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFS 118
IV+L ETK SS+++ IKS+WSS I W SL A +S GI++ W + S +VI +FS
Sbjct: 31 IVILSETKSSSINNKFIKSLWSSISIAWASLDASGASGGIILLWDQLSTSAVEVICGHFS 90
Query: 119 VSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLMIERYHP 178
+S+ LAD +++WL VY FWQ+ DL L G W++G + N+ +
Sbjct: 91 ISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNGLCGPIWLLGEDFNIYRWSHET 150
Query: 179 IFVH-LIVGYNYQLHDIP--------LFNGCFTWSSFGSIQYMSLLDRFFIMKNCLQKFG 238
+ G N H I + NG +TWS+ +S ++RF K KF
Sbjct: 151 SSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTWSNLRPHIVLSRINRFLYSKGWSDKFS 210
Query: 239 VVTLKSLERTTSDHFPL 247
+K L R SDH+P+
Sbjct: 211 HHHIKRLPRACSDHYPI 227
BLAST of CmUC06G117930 vs. NCBI nr
Match:
XP_031739979.1 (uncharacterized protein LOC116403332 [Cucumis sativus])
HSP 1 Score: 100.9 bits (250), Expect = 1.6e-17
Identity = 59/167 (35.33%), Postives = 87/167 (52.10%), Query Frame = 0
Query: 51 LIQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSIN 110
L+ + N +V+LQ++K+S+V+ HL+KS+WSS ++GW +L A SS GILI W E ++
Sbjct: 16 LLVKFNPDVVILQKSKVSTVNRHLVKSVWSSWFVGWATLEAYGSSGGILILWKEDSITVV 75
Query: 111 DVIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGN 170
D IQ FS+SI G+S W+ VY + FW + L L +NW +G + N
Sbjct: 76 DSIQGQFSISIHWKFNAGFSGWITGVYGPSSYRLRDQFWWELSSLYGLCNENWCVGGDFN 135
Query: 171 LM-----------IERYHPIFVHLIVGYNYQLHDIPLFNGCFTWSSF 207
++ R F LI + DIP NG F+W F
Sbjct: 136 VVRWLNEKSSDACPTRSMIRFTSLI--EELDMVDIPFRNGRFSWPPF 180
BLAST of CmUC06G117930 vs. NCBI nr
Match:
CAN60722.1 (hypothetical protein VITISV_022058 [Vitis vinifera])
HSP 1 Score: 100.1 bits (248), Expect = 2.8e-17
Identity = 65/206 (31.55%), Postives = 94/206 (45.63%), Query Frame = 0
Query: 52 IQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSIND 111
++ N +V+ QETK D + S+WS W L +S GILI W+ S +
Sbjct: 231 LRLQNPNVVMFQETKRKVCDRKFVNSVWSVRNKEWVILPTCGASGGILIIWNSKKMSGEE 290
Query: 112 VIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNL 171
V+ +FSVS++ L WL AVY + DFW + DL CL +W +G + N+
Sbjct: 291 VVIGSFSVSVKFLLDGSGPLWLSAVYGPNNPSIRKDFWVELLDLFCLTYPSWCVGGDFNV 350
Query: 172 MIERYHPI----FVHLIVGYN-----YQLHDIPLFNGCFTWSSFGSIQYMSLLDRFFIMK 231
+ R + F + ++ +LHD PL N FTWS+ LDRFF
Sbjct: 351 IRRRSEKLEGSGFTSSMRDFDGFIRECELHDPPLRNASFTWSNMQESPVCKRLDRFFYSN 410
Query: 232 NCLQKFGVVTLKSLERTTSDHFPLDL 249
F + L R TSDH+ + L
Sbjct: 411 EWELSFPQSLQEVLPRWTSDHWSIVL 436
BLAST of CmUC06G117930 vs. NCBI nr
Match:
KAA0059738.1 (hypothetical protein E6C27_scaffold551G00160 [Cucumis melo var. makuwa] >TYK09456.1 hypothetical protein E5676_scaffold499G00460 [Cucumis melo var. makuwa])
HSP 1 Score: 99.0 bits (245), Expect = 6.2e-17
Identity = 60/170 (35.29%), Postives = 87/170 (51.18%), Query Frame = 0
Query: 10 SKPKCPPPITSKKP---KLQRELQGLHSPIHYNKTTLAIREGSFLIQQHNTGIVLLQETK 69
+K + PPP P L +Q P H + I+ + +LLQ
Sbjct: 31 AKLRVPPPNNDPSPVPTDLNSTVQHPIPPSHPTACDILSTSTCCPIRLRDMAFILLQHG- 90
Query: 70 LSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFSVSIQVTLA 129
SIWSS +IGW +L AI +S G LI W DF+++DVIQ +++SI +++
Sbjct: 91 ---------LSIWSSAFIGWLALDAIGTSGGFLILWQALDFTVHDVIQGLYTISIHISMV 150
Query: 130 DGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLMIERY 177
D +SF L VY +D Y DFW + D+LA LGG +W+IG GN + R+
Sbjct: 151 DDFSFLLSTVYSPSDGFYLTDFWHELDNLAGLGGVSWIIG--GNFNVTRW 188
BLAST of CmUC06G117930 vs. ExPASy TrEMBL
Match:
A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 2.1e-26
Identity = 73/206 (35.44%), Postives = 118/206 (57.28%), Query Frame = 0
Query: 52 IQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSIND 111
I + N +V+LQETKLS +D ++KS+WS+ I W++L A ++GILI W++ D +
Sbjct: 24 ISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSALDASGMASGILILWNDPDLKAAE 83
Query: 112 VIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNL 171
+I+ FS++I L+DG+ FW+ +Y + +H FWQ+ DL+ L ++W+ L G+
Sbjct: 84 MIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLFWQELLDLSDLCENHWI--LAGDF 143
Query: 172 MIERY-------HPIFVHLIVGYNY----QLHDIPLFNGCFTWSSFGSIQYMSLLDRFFI 231
+ R+ P+ + + ++ L D+PL NG TWS S SL+D F +
Sbjct: 144 NVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWSRNTS---FSLIDCFLL 203
Query: 232 MKNCLQKFGVVTLKSLERTTSDHFPL 247
C+ K G+ K + RTTSDHFP+
Sbjct: 204 TNGCIDKLGMPIAKRMTRTTSDHFPI 224
BLAST of CmUC06G117930 vs. ExPASy TrEMBL
Match:
A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 4.9e-20
Identity = 68/197 (34.52%), Postives = 100/197 (50.76%), Query Frame = 0
Query: 59 IVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFS 118
IV+L ETK SS+++ IKS+WSS I W SL A +S GI++ W + S +VI +FS
Sbjct: 31 IVILSETKSSSINNKFIKSLWSSISIAWASLDASGASGGIILLWDQLSTSAVEVICGHFS 90
Query: 119 VSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLMIERYHP 178
+S+ LAD +++WL VY FWQ+ DL L G W++G + N+ +
Sbjct: 91 ISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNGLCGPIWLLGEDFNIYRWSHET 150
Query: 179 IFVH-LIVGYNYQLHDIP--------LFNGCFTWSSFGSIQYMSLLDRFFIMKNCLQKFG 238
+ G N H I + NG +TWS+ +S ++RF K KF
Sbjct: 151 SSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTWSNLRPHIVLSRINRFLYSKGWSDKFS 210
Query: 239 VVTLKSLERTTSDHFPL 247
+K L R SDH+P+
Sbjct: 211 HHHIKRLPRACSDHYPI 227
BLAST of CmUC06G117930 vs. ExPASy TrEMBL
Match:
A0A7N2L897 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 3.5e-18
Identity = 74/252 (29.37%), Postives = 126/252 (50.00%), Query Frame = 0
Query: 16 PPITSKKPKLQRELQGLHSPIHYNKTTLAIREG----------SFLIQQHNTGIVLLQET 75
PP+ + + L REL+GL S ++Y+ TL+ + G L+++ +V LQET
Sbjct: 485 PPVKAGQKGL-RELRGLFSSVNYD-GTLSEQRGLNNPQKMEVCKNLLKEWRCDVVCLQET 544
Query: 76 KLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFSVSIQVT- 135
KL+S++S L++S+W S ++ W L A+ +S G+L+ W + DV FSVS+ +
Sbjct: 545 KLASINSTLVRSLWGSPFVNWAVLDAVQTSRGVLLIWDKRVVEKIDVSVGRFSVSVLLKG 604
Query: 136 LADGYSFWLC-AVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLM--------IER 195
+ DG+ W+C +Y + + A W++ + W + + N++ E
Sbjct: 605 VLDGFE-WVCTGLYGPNVDHHRAALWEELSRVRVRWNTAWFLFGDFNIIRFPCERLGCES 664
Query: 196 YHP-IFVHLIVGYNYQLHDIPLFNGCFTWSSFGSIQYMSLLDRFFIMKNCLQKFGVVTLK 247
+ P +F N L D+PL FTW Q MS +DR + + + FG+++ +
Sbjct: 665 FSPAMFAFSDFIENNYLVDLPLEGAAFTWFRDAEPQAMSHIDRTLVSMDWVDHFGIMSQR 724
BLAST of CmUC06G117930 vs. ExPASy TrEMBL
Match:
A0A5D3CGF9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00460 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 3.0e-17
Identity = 60/170 (35.29%), Postives = 87/170 (51.18%), Query Frame = 0
Query: 10 SKPKCPPPITSKKP---KLQRELQGLHSPIHYNKTTLAIREGSFLIQQHNTGIVLLQETK 69
+K + PPP P L +Q P H + I+ + +LLQ
Sbjct: 31 AKLRVPPPNNDPSPVPTDLNSTVQHPIPPSHPTACDILSTSTCCPIRLRDMAFILLQHG- 90
Query: 70 LSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFSVSIQVTLA 129
SIWSS +IGW +L AI +S G LI W DF+++DVIQ +++SI +++
Sbjct: 91 ---------LSIWSSAFIGWLALDAIGTSGGFLILWQALDFTVHDVIQGLYTISIHISMV 150
Query: 130 DGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLMIERY 177
D +SF L VY +D Y DFW + D+LA LGG +W+IG GN + R+
Sbjct: 151 DDFSFLLSTVYSPSDGFYLTDFWHELDNLAGLGGVSWIIG--GNFNVTRW 188
BLAST of CmUC06G117930 vs. ExPASy TrEMBL
Match:
A0A803P8A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 5.1e-17
Identity = 66/202 (32.67%), Postives = 92/202 (45.54%), Query Frame = 0
Query: 56 NTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQV 115
N +V+LQE K ++VD I SIW S + W L AI S G L+ W S+ D +
Sbjct: 28 NPDMVILQEVKRATVDRRFIGSIWRSRFKAWILLPAIGRSGGTLLIWDTRIISVLDSLVG 87
Query: 116 NFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNL---- 175
FS+S+ + +W VY FW + L+ + G++W +G + N+
Sbjct: 88 EFSISVLINAEGKEPWWFSGVYGPCSYKIRHVFWDELAGLSSICGESWCVGGDFNVTRRV 147
Query: 176 -------MIERYHPIFVHLIVGYNYQLHDIPLFNGCFTWSSFGSIQYMSLLDRFFIMKNC 235
R +F LI QL D L NG FTWS+F +I S LDRF + N
Sbjct: 148 GEKLNSSSSTRSMKLFDGLI--RELQLIDPKLENGSFTWSNFRAIPICSRLDRFLFLNNW 207
Query: 236 LQKFGVVTLKSLERTTSDHFPL 247
F V + L R SDH P+
Sbjct: 208 NVVFPFVRQEMLVRLVSDHSPV 227
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022158956.1 | 4.3e-26 | 35.44 | uncharacterized protein LOC111025405 [Momordica charantia] | [more] |
XP_022145142.1 | 1.0e-19 | 34.52 | uncharacterized protein LOC111014657 [Momordica charantia] | [more] |
XP_031739979.1 | 1.6e-17 | 35.33 | uncharacterized protein LOC116403332 [Cucumis sativus] | [more] |
CAN60722.1 | 2.8e-17 | 31.55 | hypothetical protein VITISV_022058 [Vitis vinifera] | [more] |
KAA0059738.1 | 6.2e-17 | 35.29 | hypothetical protein E6C27_scaffold551G00160 [Cucumis melo var. makuwa] >TYK0945... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E2G6 | 2.1e-26 | 35.44 | uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A6J1CVN2 | 4.9e-20 | 34.52 | uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A7N2L897 | 3.5e-18 | 29.37 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
A0A5D3CGF9 | 3.0e-17 | 35.29 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A803P8A0 | 5.1e-17 | 32.67 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |