CmUC06G117880 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G117880
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Transposon Tf2-1 polyprotein isoform X1
Location	CmU531Chr06: 15296495 .. 15296950 (-)
RNA-Seq Expression	CmUC06G117880
Synteny	CmUC06G117880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGCTGTAAGGTGATCAAAGATTCCTACTGTATCTGGTCCGAATCTGGTATGTTTGACGTGGAAGATATGGAAGCAAACAAAATACTTTCACTATCTGAATCACATCTTCACTGGTTTGTAGAGCAGATTTCAGAACTTCTACAGGGCACAACTGATCGTTTTCTCCCAAGAAATGGTCGGGATTACTTAAGGGCGACAAGGCTGGCGAAGTTTAGCAACAAATCTAGTTGGGTTTTGAGGTGTGTGGCTTGGCCAATAGACGGTGGTCGCTTCTTCTTACATGTTCAGGAAGGGGTGGCACAACAGGGTTGGATTTCTTTTTGGGGAATGTTAAGGAATTTTATTCAGAAATATGAGTTTAAAGTTCAACACGGCCCGAAGAGTTTGAAATTTGATTACAACTACGTTAGTCTCCACAAGAACTTTATTCTTCAAAGAGCCAAGAATTGA

mRNA sequence

ATGGTAAGCTGTAAGGTGATCAAAGATTCCTACTGTATCTGGTCCGAATCTGGTATGTTTGACGTGGAAGATATGGAAGCAAACAAAATACTTTCACTATCTGAATCACATCTTCACTGGTTTGTAGAGCAGATTTCAGAACTTCTACAGGGCACAACTGATCGTTTTCTCCCAAGAAATGGTCGGGATTACTTAAGGGCGACAAGGCTGGCGAAGTTTAGCAACAAATCTAGTTGGGTTTTGAGGTGTGTGGCTTGGCCAATAGACGGTGGTCGCTTCTTCTTACATGTTCAGGAAGGGGTGGCACAACAGGGTTGGATTTCTTTTTGGGGAATGTTAAGGAATTTTATTCAGAAATATGAGTTTAAAGTTCAACACGGCCCGAAGAGTTTGAAATTTGATTACAACTACGTTAGTCTCCACAAGAACTTTATTCTTCAAAGAGCCAAGAATTGA

Coding sequence (CDS)

ATGGTAAGCTGTAAGGTGATCAAAGATTCCTACTGTATCTGGTCCGAATCTGGTATGTTTGACGTGGAAGATATGGAAGCAAACAAAATACTTTCACTATCTGAATCACATCTTCACTGGTTTGTAGAGCAGATTTCAGAACTTCTACAGGGCACAACTGATCGTTTTCTCCCAAGAAATGGTCGGGATTACTTAAGGGCGACAAGGCTGGCGAAGTTTAGCAACAAATCTAGTTGGGTTTTGAGGTGTGTGGCTTGGCCAATAGACGGTGGTCGCTTCTTCTTACATGTTCAGGAAGGGGTGGCACAACAGGGTTGGATTTCTTTTTGGGGAATGTTAAGGAATTTTATTCAGAAATATGAGTTTAAAGTTCAACACGGCCCGAAGAGTTTGAAATTTGATTACAACTACGTTAGTCTCCACAAGAACTTTATTCTTCAAAGAGCCAAGAATTGA

Protein sequence

MVSCKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRNGRDYLRATRLAKFSNKSSWVLRCVAWPIDGGRFFLHVQEGVAQQGWISFWGMLRNFIQKYEFKVQHGPKSLKFDYNYVSLHKNFILQRAKN

Homology

[Close]

BLAST of CmUC06G117880 vs. NCBI nr
Match: KAA0036035.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MVSCKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRN 60
           +V CK+ +  YCIW E     +ED+EA + +S S S L W    IS LL+   D    + 
Sbjct: 45  IVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNNFKKF 104

Query: 61  GRDYLRATRLAKFSNKSSWVLRCVAWPIDGGRFFLHVQEGVAQQGWISFWGMLRNFIQKY 120
           G       R++KF  KS WVL C  WP  GG F +    G  QQGW+S   ML  F++K 
Sbjct: 105 GDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKFVEKM 164

Query: 121 EF 123
           ++
Sbjct: 165 DY 166

[Close]

BLAST of CmUC06G117880 vs. NCBI nr
Match: TYJ98834.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MVSCKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRN 60
           +V CK+ +  YCIW E     +ED+EA + +S S S L W    IS LL+   D    + 
Sbjct: 219 IVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNNFKKF 278

Query: 61  GRDYLRATRLAKFSNKSSWVLRCVAWPIDGGRFFLHVQEGVAQQGWISFWGMLRNFIQKY 120
           G       R++KF  KS WVL C  WP  GG F +    G  QQGW+S   ML  F++K 
Sbjct: 279 GDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKFVEKM 338

Query: 121 EF 123
           ++
Sbjct: 339 DY 340

[Close]

BLAST of CmUC06G117880 vs. NCBI nr
Match: TYJ98411.1 (nucleotide binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-11
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 4   CKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRNGRD 63
           CKV+   YCIW +   F +ED+EA KILSLS++   WF+++ISE L+G  + FL RNG D
Sbjct: 265 CKVVNVPYCIWFDKDYFHIEDVEARKILSLSDTQFRWFLKEISEFLRGPENGFLLRNGFD 324

Query: 64  YLRATRLAKF 74
              +TRL KF
Sbjct: 325 DFGSTRLLKF 334

[Close]

BLAST of CmUC06G117880 vs. NCBI nr
Match: TYK02777.1 (Transposon TX1 uncharacterized [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 2  VSCKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRNG 61
          VSCK++   YCIW E G F +ED++  KI+SLS++ L WF   I+ L++    +F  ++G
Sbjct: 3  VSCKIVDPFYCIWLEKGQFHIEDVDFQKIISLSKTQLEWFTNSIAVLVKEPAWKFFSKSG 62

Query: 62 RDYLRATRLAKFSNKSSWVL 82
           D    TRL+KF   S W L
Sbjct: 63 NDDAGITRLSKFQTPSGWFL 82

[Close]

BLAST of CmUC06G117880 vs. NCBI nr
Match: KAA0063979.1 (hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-10
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 3  SCKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRNGR 62
          S K+ K  YCIWS+   F +ED++  K L +S++ L WF+  + +L+Q     F  +NGR
Sbjct: 5  SRKIAKSIYCIWSDKVHFHIEDVDFRKNLRVSKNQLRWFIAAMLDLVQDEEHCFFLKNGR 64

Query: 63 DYLRATRLAKFSNKSSWVLRCVA 86
          D    TRL KF     W++RCVA
Sbjct: 65 DTDGTTRLTKFRRSPEWIVRCVA 87

[Close]

BLAST of CmUC06G117880 vs. ExPASy TrEMBL
Match: A0A5D3BIE8 (Putative 3,4-dihydroxy-2-butanone kinase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00250 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MVSCKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRN 60
           +V CK+ +  YCIW E     +ED+EA + +S S S L W    IS LL+   D    + 
Sbjct: 219 IVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNNFKKF 278

Query: 61  GRDYLRATRLAKFSNKSSWVLRCVAWPIDGGRFFLHVQEGVAQQGWISFWGMLRNFIQKY 120
           G       R++KF  KS WVL C  WP  GG F +    G  QQGW+S   ML  F++K 
Sbjct: 279 GDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKFVEKM 338

Query: 121 EF 123
           ++
Sbjct: 339 DY 340

[Close]

BLAST of CmUC06G117880 vs. ExPASy TrEMBL
Match: A0A5A7T3H6 (Putative 3,4-dihydroxy-2-butanone kinase isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00260 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MVSCKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRN 60
           +V CK+ +  YCIW E     +ED+EA + +S S S L W    IS LL+   D    + 
Sbjct: 45  IVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNNFKKF 104

Query: 61  GRDYLRATRLAKFSNKSSWVLRCVAWPIDGGRFFLHVQEGVAQQGWISFWGMLRNFIQKY 120
           G       R++KF  KS WVL C  WP  GG F +    G  QQGW+S   ML  F++K 
Sbjct: 105 GDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKFVEKM 164

Query: 121 EF 123
           ++
Sbjct: 165 DY 166

[Close]

BLAST of CmUC06G117880 vs. ExPASy TrEMBL
Match: A0A5D3BIA6 (Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00070 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 4   CKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRNGRD 63
           CKV+   YCIW +   F +ED+EA KILSLS++   WF+++ISE L+G  + FL RNG D
Sbjct: 265 CKVVNVPYCIWFDKDYFHIEDVEARKILSLSDTQFRWFLKEISEFLRGPENGFLLRNGFD 324

Query: 64  YLRATRLAKF 74
              +TRL KF
Sbjct: 325 DFGSTRLLKF 334

[Close]

BLAST of CmUC06G117880 vs. ExPASy TrEMBL
Match: A0A5D3BTI0 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00360 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 2  VSCKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRNG 61
          VSCK++   YCIW E G F +ED++  KI+SLS++ L WF   I+ L++    +F  ++G
Sbjct: 3  VSCKIVDPFYCIWLEKGQFHIEDVDFQKIISLSKTQLEWFTNSIAVLVKEPAWKFFSKSG 62

Query: 62 RDYLRATRLAKFSNKSSWVL 82
           D    TRL+KF   S W L
Sbjct: 63 NDDAGITRLSKFQTPSGWFL 82

[Close]

BLAST of CmUC06G117880 vs. ExPASy TrEMBL
Match: A0A5A7VEL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001380 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-10
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 3  SCKVIKDSYCIWSESGMFDVEDMEANKILSLSESHLHWFVEQISELLQGTTDRFLPRNGR 62
          S K+ K  YCIWS+   F +ED++  K L +S++ L WF+  + +L+Q     F  +NGR
Sbjct: 5  SRKIAKSIYCIWSDKVHFHIEDVDFRKNLRVSKNQLRWFIAAMLDLVQDEEHCFFLKNGR 64

Query: 63 DYLRATRLAKFSNKSSWVLRCVA 86
          D    TRL KF     W++RCVA
Sbjct: 65 DTDGTTRLTKFRRSPEWIVRCVA 87

The following BLAST results are available for this feature:

BLAST of CmUC06G117880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036035.1	1.2e-15	38.52	putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo var. makuwa]	[more]
TYJ98834.1	1.2e-15	38.52	putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Cucumis melo var. makuwa]	[more]
TYJ98411.1	4.0e-11	51.43	nucleotide binding protein [Cucumis melo var. makuwa]	[more]
TYK02777.1	4.0e-11	42.50	Transposon TX1 uncharacterized [Cucumis melo var. makuwa]	[more]
KAA0063979.1	3.4e-10	40.96	hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa]	[more]

BLAST of CmUC06G117880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G117880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIE8	5.8e-16	38.52	Putative 3,4-dihydroxy-2-butanone kinase isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A5A7T3H6	5.8e-16	38.52	Putative 3,4-dihydroxy-2-butanone kinase isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3BIA6	1.9e-11	51.43	Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3BTI0	1.9e-11	42.50	Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VEL7	1.6e-10	40.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmUC06G117880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G117880.1	CmUC06G117880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006810	transport
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003824	catalytic activity