CmUC06G117620 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G117620
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	ribosomal protein L5
Location	CmU531Chr06: 14937023 .. 14937700 (+)
RNA-Seq Expression	CmUC06G117620
Synteny	CmUC06G117620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGATATTGGAAATGTCTTTCAGTTCTTTGATCCATTTCGTGGTGCGAAATCCATCATTTGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTGTTGCATTGTTTGCTCCAATGATGACCTTTTTTTATCTCATTTGTATTCCAATAGGAAAAAAGAAAGAATTTTTCCGTTTCACTCAACCATCTTTTTGAAGCAAATAGTTCACAGTGCTCATTCTATAGATACTGTGTAAAAAAGCCAACTCATGTTTTCACTCGATTTTCATTATGAAGATGTATCACGTCAGGATCCATTGCTCAAACTAAATCACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGATAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGAAAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG

mRNA sequence

ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGATATTGGAAATGTCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACGTCAGGATCCATTGCTCAAACTAAATCACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGATAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGAAAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG

Coding sequence (CDS)

ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGATATTGGAAATGTCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACGTCAGGATCCATTGCTCAAACTAAATCACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGATAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGAAAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG

Protein sequence

MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM

Homology

[Close]

BLAST of CmUC06G117620 vs. NCBI nr
Match: KAF4349909.1 (hypothetical protein G4B88_002331 [Cannabis sativa])

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50
Identity = 117/211 (55.45%), Postives = 127/211 (60.19%), Query Frame = 0


Query: 1   MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQ----------------- 60
           +THTNPTLLS I+ LSLLGNHEEDS+TGLSGR  AV IGNVF                  
Sbjct: 46  VTHTNPTLLSSIVSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQLF 105

Query: 61  ----------------------------------------------------FFDPFRDV 120
                                                                +  + DV
Sbjct: 106 GYAIFGFALTEAIAILCPLLRKLKFHSYNYLFEADSSQCSFYRYCKSQLMFPLYFHYEDV 165

Query: 121 SRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGK 143
           SRQDPLLK NHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQT+RGS+GK
Sbjct: 166 SRQDPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGK 225

[Close]

BLAST of CmUC06G117620 vs. NCBI nr
Match: KAF3452179.1 (hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis])

HSP 1 Score: 192.2 bits (487), Expect = 3.1e-45
Identity = 107/184 (58.15%), Postives = 113/184 (61.41%), Query Frame = 0


Query: 15  LSLLGNHEEDSQTGLSGREVAVDIGNV--------------------------------- 74
           LSLLGNHEEDS+TGLSGR  AV IGNV                                 
Sbjct: 133 LSLLGNHEEDSRTGLSGRGAAVGIGNVLSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 192

Query: 75  -----------------------FQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIP 134
                                  F     + DVSRQDPLLK NHA VMEVPGSCEIR +P
Sbjct: 193 SFASFFANSSQCSFYRKSKSHLMFPLHFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVP 252

Query: 135 KAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLR 143
           KAPYDFIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSN FL SNKDKGYVSDLAR+STLR
Sbjct: 253 KAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNQFLGSNKDKGYVSDLARQSTLR 312

[Close]

BLAST of CmUC06G117620 vs. NCBI nr
Match: YP_009913650.1 (ribosomal protein L5 [Luffa acutangula] >QLJ93020.1 ribosomal protein L5 [Luffa acutangula])

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-42
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 48  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFLESNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. NCBI nr
Match: QHE65829.1 (ribosomal protein L5 [Castanospermum australe])

HSP 1 Score: 181.4 bits (459), Expect = 5.4e-42
Identity = 86/102 (84.31%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 41  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. NCBI nr
Match: YP_009522804.1 (ribosomal protein L5 [Styphnolobium japonicum] >AXQ37258.1 ribosomal protein L5 [Styphnolobium japonicum])

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 85/102 (83.33%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 41  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQ+GS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQKGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. ExPASy Swiss-Prot
Match: P42793 (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-39
Identity = 79/95 (83.16%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 48  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DV RQD LLKLN+A VMEVPG CEIR +PKAPY+FIIKNGK AM+IP GQKFIQTQRG
Sbjct: 8   YEDVLRQDLLLKLNYANVMEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. ExPASy Swiss-Prot
Match: Q05492 (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-36
Identity = 77/97 (79.38%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 48  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPK--APYDFIIKNGKFAMKIPRGQKFIQTQ 107
           + DV RQD LLKLN A VMEVPG CEIR +PK  + YDFIIKNGK AM+I RGQKFIQT+
Sbjct: 8   YEDVLRQDLLLKLNLANVMEVPGLCEIRIVPKTSSTYDFIIKNGKLAMEILRGQKFIQTE 67

Query: 108 RGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           RGS+GKSFRSNPFLESNKDKGYVSDLAR+S LRGHGM
Sbjct: 68  RGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGM 104

[Close]

BLAST of CmUC06G117620 vs. ExPASy Swiss-Prot
Match: P49388 (60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 151.8 bits (382), Expect = 6.0e-36
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 48  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVSRQDPLL     T+ +  GSCEIR +P  PY+FIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLNRITPTLWKFLGSCEIRVVPNGPYNFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. ExPASy Swiss-Prot
Match: P51409 (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-26
Identity = 69/104 (66.35%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 41  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPK-APYDFIIKNGKFAMKIPRGQ 100
           +F  +  + DV RQD LLKLN+A VMEVPG C+I  +PK AP    IKNGK AM+I  GQ
Sbjct: 5   MFPLYFHYEDVLRQDLLLKLNYANVMEVPGLCKIIVVPKTAP---SIKNGKLAMEISCGQ 64

Query: 101 KFIQTQRGSSGKSFRSNPFLESNKD-KGYVSDLARKSTLRGHGM 143
           K    QR S+GKSFRSNPFL SNKD KGYVSDLAR+STLRGHGM
Sbjct: 65  KL--KQRASTGKSFRSNPFLGSNKDKKGYVSDLARQSTLRGHGM 103

[Close]

BLAST of CmUC06G117620 vs. ExPASy Swiss-Prot
Match: P26860 (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-19
Identity = 58/99 (58.59%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 48  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQ-R 107
           +  V R D LLK+N+  +MEVP  C+I  +PKAP +F IKN K AM+I  GQKFIQT+ R
Sbjct: 13  YNQVIRPDLLLKINYENIMEVPRLCKIIVVPKAPSNF-IKNVKLAMEIVCGQKFIQTRSR 72

Query: 108 GSSGKSFRSNPFL---ESNKDKGYVSDLARKSTLRGHGM 143
           GS+GKSFR N F+   ES +D GYV+ LAR STLRGH M
Sbjct: 73  GSTGKSFRFNKFVLNQESKRDTGYVTYLAR-STLRGHIM 109

[Close]

BLAST of CmUC06G117620 vs. ExPASy TrEMBL
Match: A0A7J6DWT2 (ATP-synt_C domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002331 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.3e-51
Identity = 117/211 (55.45%), Postives = 127/211 (60.19%), Query Frame = 0


Query: 1   MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQ----------------- 60
           +THTNPTLLS I+ LSLLGNHEEDS+TGLSGR  AV IGNVF                  
Sbjct: 46  VTHTNPTLLSSIVSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQLF 105

Query: 61  ----------------------------------------------------FFDPFRDV 120
                                                                +  + DV
Sbjct: 106 GYAIFGFALTEAIAILCPLLRKLKFHSYNYLFEADSSQCSFYRYCKSQLMFPLYFHYEDV 165

Query: 121 SRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGK 143
           SRQDPLLK NHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQT+RGS+GK
Sbjct: 166 SRQDPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGK 225

[Close]

BLAST of CmUC06G117620 vs. ExPASy TrEMBL
Match: A0A7D5Y005 (Ribosomal protein L5 OS=Luffa acutangula OX=56866 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 48  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFLESNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. ExPASy TrEMBL
Match: A0A6B9QFQ7 (Ribosomal protein L5 OS=Castanospermum australe OX=24962 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.6e-42
Identity = 86/102 (84.31%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 41  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. ExPASy TrEMBL
Match: A0A385CAQ4 (Ribosomal protein L5 OS=Styphnolobium japonicum OX=3897 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.8e-42
Identity = 85/102 (83.33%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 41  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQ+GS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQKGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. ExPASy TrEMBL
Match: A0A6J5TIQ9 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32351 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.9e-42
Identity = 85/102 (83.33%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 41  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVLPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQT+RGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTKRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. TAIR 10
Match: AT2G07725.1 (Ribosomal L5P family protein )

HSP 1 Score: 174.9 bits (442), Expect = 4.7e-44
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 48  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVSRQDPLLK NHA VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of CmUC06G117620 vs. TAIR 10
Match: ATMG00210.1 (ribosomal protein L5 )

HSP 1 Score: 174.9 bits (442), Expect = 4.7e-44
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 48  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVSRQDPLLK NHA VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

The following BLAST results are available for this feature:

BLAST of CmUC06G117620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4349909.1	1.1e-50	55.45	hypothetical protein G4B88_002331 [Cannabis sativa]	[more]
KAF3452179.1	3.1e-45	58.15	hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis]	[more]
YP_009913650.1	3.2e-42	90.53	ribosomal protein L5 [Luffa acutangula] >QLJ93020.1 ribosomal protein L5 [Luffa ...	[more]
QHE65829.1	5.4e-42	84.31	ribosomal protein L5 [Castanospermum australe]	[more]
YP_009522804.1	1.2e-41	83.33	ribosomal protein L5 [Styphnolobium japonicum] >AXQ37258.1 ribosomal protein L5 ...	[more]

BLAST of CmUC06G117620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42793	1.5e-39	83.16	60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 ...	[more]
Q05492	3.5e-36	79.38	60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 ...	[more]
P49388	6.0e-36	76.84	60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 S...	[more]
P51409	2.5e-26	66.35	60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=...	[more]
P26860	1.3e-19	58.59	60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5...	[more]

BLAST of CmUC06G117620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6DWT2	5.3e-51	55.45	ATP-synt_C domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002331 ...	[more]
A0A7D5Y005	1.5e-42	90.53	Ribosomal protein L5 OS=Luffa acutangula OX=56866 GN=rpl5 PE=3 SV=1	[more]
A0A6B9QFQ7	2.6e-42	84.31	Ribosomal protein L5 OS=Castanospermum australe OX=24962 GN=rpl5 PE=3 SV=1	[more]
A0A385CAQ4	5.8e-42	83.33	Ribosomal protein L5 OS=Styphnolobium japonicum OX=3897 GN=rpl5 PE=3 SV=1	[more]
A0A6J5TIQ9	9.9e-42	83.33	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32351 PE=3 S...	[more]

BLAST of CmUC06G117620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07725.1	4.7e-44	87.37	Ribosomal L5P family protein	[more]
ATMG00210.1	4.7e-44	87.37	ribosomal protein L5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11994:SF34	RIBOSOMAL PROTEIN L5 DOMAIN-CONTAINING PROTEIN-RELATED	coord: 48..142
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 48..142
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 46..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G117620.1	CmUC06G117620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome