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CmUC06G117490 (gene) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCAACATCCAATACCCAACTACCGGCACTACCAAAAGAGCAACCCTCTATCCCTACTCCGACGACCAATACTCATACCTCCTTTGTAACTCTTCCTCCGGGAACTTTACCTACTACCCCATATCACACTACTCGTCCTTTCAATCTCAATGTTTTCCCACTCTCCCCCACCTCCAATTTTCCTCCTCAAAATGATTTTCAATACCCTCCAACCCAGCCGGCGACTGTACCATTTTACAATGGTTTCACACCCACTAACCTTCCTCAACCTACTTCAAATTTTACCACCCTAACCCCCCCTCTTAACATCAAACTTTTAGACTCCAATTACCTCTTATGGGAGAAAAAATTATTGAATCATGTTATCATGTTTGGACTAGAAGGCTTCATCAATGGCATTGTCCAGAAGCCTCCACAATTTTTGGATGCTGCTCACACTCAAGTAAGTCCTACTTATATCAATTGGCAGAAGTGCAATCGCACCCTTATGAGTTGGATTGATTCCTCTCTTAATGAAGATAAATTAGGTGAAATTGTTGGTTATGATACTGCTTATGAAATCTGGGAATCTTTGCGTACTGTTTATGAATCATCTTCTACTGCTAAAATGATGGGTTTTCCATCTTAG ATGGCGTCAACATCCAATACCCAACTACCGGCACTACCAAAAGAGCAACCCTCTATCCCTACTCCGACGACCAATACTCATACCTCCTTTGTAACTCTTCCTCCGGGAACTTTACCTACTACCCCATATCACACTACTCGTCCTTTCAATCTCAATGTTTTCCCACTCTCCCCCACCTCCAATTTTCCTCCTCAAAATGATTTTCAATACCCTCCAACCCAGCCGGCGACTGTACCATTTTACAATGGTTTCACACCCACTAACCTTCCTCAACCTACTTCAAATTTTACCACCCTAACCCCCCCTCTTAACATCAAACTTTTAGACTCCAATTACCTCTTATGGGAGAAAAAATTATTGAATCATGTTATCATGTTTGGACTAGAAGGCTTCATCAATGGCATTGTCCAGAAGCCTCCACAATTTTTGGATGCTGCTCACACTCAAGTAAGTCCTACTTATATCAATTGGCAGAAGTGCAATCGCACCCTTATGAGTTGGATTGATTCCTCTCTTAATGAAGATAAATTAGGTGAAATTGTTGGTTATGATACTGCTTATGAAATCTGGGAATCTTTGCGTACTGTTTATGAATCATCTTCTACTGCTAAAATGATGGGTTTTCCATCTTAG ATGGCGTCAACATCCAATACCCAACTACCGGCACTACCAAAAGAGCAACCCTCTATCCCTACTCCGACGACCAATACTCATACCTCCTTTGTAACTCTTCCTCCGGGAACTTTACCTACTACCCCATATCACACTACTCGTCCTTTCAATCTCAATGTTTTCCCACTCTCCCCCACCTCCAATTTTCCTCCTCAAAATGATTTTCAATACCCTCCAACCCAGCCGGCGACTGTACCATTTTACAATGGTTTCACACCCACTAACCTTCCTCAACCTACTTCAAATTTTACCACCCTAACCCCCCCTCTTAACATCAAACTTTTAGACTCCAATTACCTCTTATGGGAGAAAAAATTATTGAATCATGTTATCATGTTTGGACTAGAAGGCTTCATCAATGGCATTGTCCAGAAGCCTCCACAATTTTTGGATGCTGCTCACACTCAAGTAAGTCCTACTTATATCAATTGGCAGAAGTGCAATCGCACCCTTATGAGTTGGATTGATTCCTCTCTTAATGAAGATAAATTAGGTGAAATTGTTGGTTATGATACTGCTTATGAAATCTGGGAATCTTTGCGTACTGTTTATGAATCATCTTCTACTGCTAAAATGATGGGTTTTCCATCTTAG MASTSNTQLPALPKEQPSIPTPTTNTHTSFVTLPPGTLPTTPYHTTRPFNLNVFPLSPTSNFPPQNDFQYPPTQPATVPFYNGFTPTNLPQPTSNFTTLTPPLNIKLLDSNYLLWEKKLLNHVIMFGLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKLGEIVGYDTAYEIWESLRTVYESSSTAKMMGFPS Homology
BLAST of CmUC06G117490 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia]) HSP 1 Score: 131.7 bits (330), Expect = 7.3e-27 Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 0
BLAST of CmUC06G117490 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa]) HSP 1 Score: 114.8 bits (286), Expect = 9.2e-22 Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 0
BLAST of CmUC06G117490 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa]) HSP 1 Score: 114.0 bits (284), Expect = 1.6e-21 Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 0
BLAST of CmUC06G117490 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale]) HSP 1 Score: 110.9 bits (276), Expect = 1.3e-20 Identity = 64/149 (42.95%), Postives = 86/149 (57.72%), Query Frame = 0
BLAST of CmUC06G117490 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 104.0 bits (258), Expect = 1.6e-18 Identity = 65/161 (40.37%), Postives = 90/161 (55.90%), Query Frame = 0
BLAST of CmUC06G117490 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27 Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 0
BLAST of CmUC06G117490 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 4.4e-22 Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 0
BLAST of CmUC06G117490 vs. ExPASy TrEMBL
Match: A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 7.6e-22 Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 0
BLAST of CmUC06G117490 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 6.4e-21 Identity = 64/149 (42.95%), Postives = 86/149 (57.72%), Query Frame = 0
BLAST of CmUC06G117490 vs. ExPASy TrEMBL
Match: A0A803NL56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 4.6e-19 Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 0
BLAST of CmUC06G117490 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08 Identity = 35/126 (27.78%), Postives = 64/126 (50.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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