CmUC06G116540 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G116540
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Eukaryotic translation initiation factor 3 subunit L
Location	CmU531Chr06: 11345357 .. 11349107 (-)
RNA-Seq Expression	CmUC06G116540
Synteny	CmUC06G116540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGCAGAAGCTCCTTGGCATCTTCCATTTGGAGTGGGTGTTCAACAATTTTTTCAAAGACAATGTCATCCAAATCCTGGCTGGTCCTAGGTTGAAAAAACAAGTTTTATCTCATATGGATAAATAGCTGGAATTTGGTTCGAGAGGAACCAAAGGGTCTTTCATGAAAAATCCTTATCATGGATAAATCGTTTTAAAGCTGCTAAACTTGATTCATCCACTTGGTATTCACTCTCCAAGATATTCTCAAGCTTCTCGATGCAAGATATATGCCTCAATTGGAATGCTTTTACTTCCTTAGCTCAGATGCATTTTGTCTTTGGTGTATTAGAACATTATAGGCTATATGCTTTACCTTCTTATGTTGAATATTGATTTTTCTCTTTTGTAACTATCAGGATGTGATGAGGGCACTAGAGTGGTGTCATCCCCAGTTGACATGACCGGGCGCATGTGTTGATCCCTTGTCTCGTTTTCACTTTGCTTTGATTACTATGTTTCCTTGTAATTTAAGCATTAGACTCTTTTCATTATATCAATGAAAAGTTTGTTTCCCTTTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAGAAACCTGCACCAGCCTCTAACAAGAAAGGAAAATTGCCTTGCTTTCTTGCTAACTCTTAAATAATCAAACAAATCATCCCATTCCTTGTTGATCAGAAATTTGCCTAAGAGGGAATGTGATTTCAAGTGCCCTCCCTTGACCAAGTGAAATGCCCATTGGATAAAGGCACTTCGAGCAAACCTGCAGCTTTGATAAAACTGTTAAACTTTCTCATTCCTCCGGTGACTCTTCCGATTGGAAATCTTTCATGACTCCATCTTGTTATGTTCAAATCTCCTCCAATACAACGAGCTTCCTCGCAATAATCATGTATAGAAGAGAGTTTCGGCCAAAGATTTCATCTTTCTCTATAATCAGTCACCCCATTTACATTGGTCACCCAACAAATGATTTTGCATTGAGTCATAATCTTGACAAAAAGTGAGCCTTTCAAGAACTCCAATGGTGTCACCTTGCTTTCATCCCACATGGTGAGTGTCCCCCCTAATTTACCAAAAGCTTCAACAAAAGTCCATCCAATTTCATTAGAGCACCAGATGGATTTAATAAATTGTAGATCAACATTCGGGCACTTGGTTTCCTGAATCAACACTAAGCCTGGGTGTTGTTGTAAGAAGTGCTTTAGGGCTATTTGCTCAGATTTATCGTTGAGGCCCCTCGTATCCATGAGACTATCTTCATAATTGAGGTTCCTCCTTTGGAGGTTCAATTTCCTGCAAATGAAAACCACATGCCGCAACTAAAGATGAAAATTTGGATGGAATTTGAGATGGAGATGGATGAGGAGCAATTACGAGATCTTATCGTTGCTGGAGAAAAAGTGCTATGTAATCCTCATCCAACTGATCTGAACTATAATCTTCTTCTTTGACAAACTCTTCATGAACCGATTGTTCACTACTTACACTTATATTTGATTTGTTTCGTGTCAGATTTTTTGGTTTGGTCAAGGAACTTTTCTCCTTCTCCTTTGGTTTCCATCAGCCATTTTCCAATAGGGAAATAAAAGAGGTGGACTCTCTTCTTTCCTTGGTGGAGGATTTTGACTTTAGGCTCTGGAGAAGGGATGTTCATGTCTCAATCTTAATCCTTTGGAGGGCTTCTTTTGTAAGTCGTTCTTTTGGATTTTTATCGAACCCTTCTCCCATTATCGAGTCAATCTTTGTTGTTTTATGGAGGATTAAGATTCCTAAGAAAGTTAAGTTCTTCTCCAAGCAAGTTTTGCTTGGTTATGTGAATACAAATGGATAGGATCTCAAGAAAGATGCACGTTAATGCATCTCTTTTCTTTCATCCTTTGTCAGAAGGCAGAGGAAAACCTAAATCACCTTCTTCGAGATCCGTTTGGAATAGTTTCTTGCAAGAGTTTCATTTTTCACTTGCTCATCGGAGGGATACAATTAATCTAATTCTTGGAGAAAGCTCTCCGTTTTATCTCTTAGGCTACATAAAAAACTTTAGGATATATGTAAATTTAACATAAAAATACTAAATGTAATCCACTAAAAGGAATAAAATGTCAAGTTAATGAAAATAGTACAAAACACAATACAAACACTAAAATACAATGCAGAAAGCAATGTCAAAGATATTGAAATACAATAATCGATCAGTGTTATTAAGGCAACCCAAGGCGCTAGCCTAAGGCGAGAGGTGCTCAAACCTGGGGTTAATGCACCTCTTGTGTTACCTAGGCAAGCGTCTTCAAAGATGCGCTCGCCCAGCGACACCTTTTGGCACCTGGCAACACCTTCACTGATGAAGGAGGTGAGCACCTCTTTGAATATTTTTTTTTTTTTTTTTTTAATTTTTAAATTGATCGACAGTCGCTTCCTTCAACTTTCGATGCTTCAATTTCTTCTTTTTAAACTTTTCAAATTCTTCTTCTTCTCGAATGGCAACAAGCACTTTCTTCTCTTCACAATTTCTTCTTCTTTTTACGGCTGCTTCTTGTGGCTTTTGATTGTGGGTTTCAATTTCGATCGTGGTTTCTTGAAGTTCTGTTTTATAAAGGTATATTCATATTATCTTATAATAGTACTATATTATATTTTTTCACTAGACAATTCAGTCATCATGGCCTCATACGATTACGATGACTCACGGGCCAACTATGATGACCCTCGCCACGTGCCGGTGCCGTCTCCGGCTGGCCAAGACATTGGCTATGACCCTAATTTTGTTCCAGATTCCATCAAGTCCTTTGTCGTTCATCTATACCGCCACATCCGAGATAAGAATGACCATGTATTCTACCTGCTTTACTGCGAGATGTGGTTCTGCCATCTCTATGCGAGGCTATCACCAAATTGAAGCAAAGCATTGATTCATGGGATAACTATTGTAGCTTATTTCAGGTGGTTTTGCACGAAGTCGTGAATATGCAATTGCCTAACCAGTGGCTATGGGATATGGTGGATGAGTTTGTTTATCAGTTCCAGAGTTTCTGCCGATACCGGACCAAGATGAAGAATAAGACCGAGCAGGAAATTTCTCTTCTGAAGCAATTCGATCAGGCTTGGAACGTATATGGTGTCCTCAATTATTTGCAAGCATTTGTTGAGAAATCCTCAATTATTCATATTCTTGAGGAGGAGAAAGGTCTTGAACAATTTACAGCCACTGATGGTGGAAGTAGTAATGTTTTGAAGGTTTTGGGATATTTCAGCTTGGTTGGATTACTTCGAGTTCATTGCCTATTAGGTGATTATCACACAGGTTTGAAGTGCTTACTCTCGATTGACATAAGCCAACAAGGTGTTTTTACTAGTGTGATTGGAAGCCATATTATTACTATATACTATTACGAGTTTGCCAACCTGATGTTGCAGTGGTATGTGGACGCAATTCATGAATTTAACCGAATTCTCTTGTATATTTATAAAACCAAGCAATACCATCAGAAATCCCCTCAGTATGAGCAGATTCTGAAGAAGAACGAGTAGATGTATGCCTTGTTGGCTATGTCTGTTTCACTTTGTCCACAAGTGAAGCTTGTTGATGAAACTGTGAACTCTCAGTTGCGGGAGAAGTATGGTGAAAAGATGATCAGAATGCAAAGGTATGACGAGGAGGCGTTTGCCATCTATGACCAGCTTTTCTCTTATGCTTGTCCAAAGTTCATCACTCCATCTGCTCCTGTTTTGAGGAGCCTCTAG

mRNA sequence

ATGCTGGCAGAAGCTCCTTGGCATCTTCCATTTGGAGTGGGTGTTCAACAATTTTTTCAAAGACAATGTCATCCAAATCCTGGCTGGCACTTCGAGCAAACCTGCAGCTTTGATAAAACTGTTAAACTTTCTCATTCCTCCGGTGACTCTTCCGATTGGAAATCTTTCATGACTCCATCTTGTTATGTTCAAATCTCCTCCAATACAACGAGCTTCCTCGCAATAATCATGTATAGAAGAGAGTTTCGGCCAAAGATTTCATCTTTCTCTATAATCAGTCACCCCATTTACATTGGTCACCCAACAAATGATTTTGCATTGAGTCATAATCTTGACAAAAAATTTATCGTTGAGGCCCCTCGTATCCATGAGACTATCTTCATAATTGAGGTTCCTCCTTTGGAGGTTCAATTTCCTGCAAATGAAAACCACATGCCGCAACTAAAGATGAAAATTTGGATGGAATTTGAGATGGAGATGGATGAGGAGCAATTACGAGATCTTATCGTTGCTGGAGAAAAAGAACTTTTCTCCTTCTCCTTTGGTTTCCATCAGCCATTTTCCAATAGGGAAATAAAAGAGGTGGACTCTCTTCTTTCCTTGGTGGAGGATTTTGACTTTAGGCTCTGGAGAAGGGATGTTCATGTCTCAATCTTAATCCTTTGGAGGGCTTCTTTTGCAAGCGTCTTCAAAGATGCGCTCGCCCAGCGACACCTTTTGGCACCTGGCAACACCTTCACTGATGAAGGAGACAATTCAGTCATCATGGCCTCATACGATTACGATGACTCACGGGCCAACTATGATGACCCTCGCCACGTGCCGGTGCCGTCTCCGGCTGGCCAAGACATTGGCTATGACCCTAATTTTGTTCCAGATTCCATCAAGTCCTTTGTCGTTCATCTATACCGCCACATCCGAGATAAGAATGACCATGTGGTTTTGCACGAAGTCGTGAATATGCAATTGCCTAACCAGTGGCTATGGGATATGGTGGATGAGTTTGTTTATCAGTTCCAGAGTTTCTGCCGATACCGGACCAAGATGAAGAATAAGACCGAGCAGGAAATTTCTCTTCTGAAGCAATTCGATCAGGCTTGGAACGTATATGGTGTCCTCAATTATTTGCAAGCATTTGTTGAGAAATCCTCAATTATTCATATTCTTGAGGAGGAGAAAGGTCTTGAACAATTTACAGCCACTGATGGTGGAAGTAGTAATGTTTTGAAGGTTTTGGGATATTTCAGCTTGGTTGGATTACTTCGAGTTCATTGCCTATTAGGTGATTATCACACAGGTTTGAAGTGCTTACTCTCGATTGACATAAGCCAACAAGTGAAGCTTGTTGATGAAACTGTGAACTCTCAGTTGCGGGAGAAGTATGGTGAAAAGATGATCAGAATGCAAAGGTATGACGAGGAGGCGTTTGCCATCTATGACCAGCTTTTCTCTTATGCTTGTCCAAAGTTCATCACTCCATCTGCTCCTGTTTTGAGGAGCCTCTAG

Coding sequence (CDS)

ATGCTGGCAGAAGCTCCTTGGCATCTTCCATTTGGAGTGGGTGTTCAACAATTTTTTCAAAGACAATGTCATCCAAATCCTGGCTGGCACTTCGAGCAAACCTGCAGCTTTGATAAAACTGTTAAACTTTCTCATTCCTCCGGTGACTCTTCCGATTGGAAATCTTTCATGACTCCATCTTGTTATGTTCAAATCTCCTCCAATACAACGAGCTTCCTCGCAATAATCATGTATAGAAGAGAGTTTCGGCCAAAGATTTCATCTTTCTCTATAATCAGTCACCCCATTTACATTGGTCACCCAACAAATGATTTTGCATTGAGTCATAATCTTGACAAAAAATTTATCGTTGAGGCCCCTCGTATCCATGAGACTATCTTCATAATTGAGGTTCCTCCTTTGGAGGTTCAATTTCCTGCAAATGAAAACCACATGCCGCAACTAAAGATGAAAATTTGGATGGAATTTGAGATGGAGATGGATGAGGAGCAATTACGAGATCTTATCGTTGCTGGAGAAAAAGAACTTTTCTCCTTCTCCTTTGGTTTCCATCAGCCATTTTCCAATAGGGAAATAAAAGAGGTGGACTCTCTTCTTTCCTTGGTGGAGGATTTTGACTTTAGGCTCTGGAGAAGGGATGTTCATGTCTCAATCTTAATCCTTTGGAGGGCTTCTTTTGCAAGCGTCTTCAAAGATGCGCTCGCCCAGCGACACCTTTTGGCACCTGGCAACACCTTCACTGATGAAGGAGACAATTCAGTCATCATGGCCTCATACGATTACGATGACTCACGGGCCAACTATGATGACCCTCGCCACGTGCCGGTGCCGTCTCCGGCTGGCCAAGACATTGGCTATGACCCTAATTTTGTTCCAGATTCCATCAAGTCCTTTGTCGTTCATCTATACCGCCACATCCGAGATAAGAATGACCATGTGGTTTTGCACGAAGTCGTGAATATGCAATTGCCTAACCAGTGGCTATGGGATATGGTGGATGAGTTTGTTTATCAGTTCCAGAGTTTCTGCCGATACCGGACCAAGATGAAGAATAAGACCGAGCAGGAAATTTCTCTTCTGAAGCAATTCGATCAGGCTTGGAACGTATATGGTGTCCTCAATTATTTGCAAGCATTTGTTGAGAAATCCTCAATTATTCATATTCTTGAGGAGGAGAAAGGTCTTGAACAATTTACAGCCACTGATGGTGGAAGTAGTAATGTTTTGAAGGTTTTGGGATATTTCAGCTTGGTTGGATTACTTCGAGTTCATTGCCTATTAGGTGATTATCACACAGGTTTGAAGTGCTTACTCTCGATTGACATAAGCCAACAAGTGAAGCTTGTTGATGAAACTGTGAACTCTCAGTTGCGGGAGAAGTATGGTGAAAAGATGATCAGAATGCAAAGGTATGACGAGGAGGCGTTTGCCATCTATGACCAGCTTTTCTCTTATGCTTGTCCAAAGTTCATCACTCCATCTGCTCCTGTTTTGAGGAGCCTCTAG

Protein sequence

MLAEAPWHLPFGVGVQQFFQRQCHPNPGWHFEQTCSFDKTVKLSHSSGDSSDWKSFMTPSCYVQISSNTTSFLAIIMYRREFRPKISSFSIISHPIYIGHPTNDFALSHNLDKKFIVEAPRIHETIFIIEVPPLEVQFPANENHMPQLKMKIWMEFEMEMDEEQLRDLIVAGEKELFSFSFGFHQPFSNREIKEVDSLLSLVEDFDFRLWRRDVHVSILILWRASFASVFKDALAQRHLLAPGNTFTDEGDNSVIMASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDKNDHVVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLKQFDQAWNVYGVLNYLQAFVEKSSIIHILEEEKGLEQFTATDGGSSNVLKVLGYFSLVGLLRVHCLLGDYHTGLKCLLSIDISQQVKLVDETVNSQLREKYGEKMIRMQRYDEEAFAIYDQLFSYACPKFITPSAPVLRSL

Homology

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BLAST of CmUC06G116540 vs. NCBI nr
Match: XP_038899265.1 (eukaryotic translation initiation factor 3 subunit L [Benincasa hispida])

HSP 1 Score: 399.1 bits (1024), Expect = 5.8e-107
Identity = 231/398 (58.04%), Postives = 237/398 (59.55%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MASYDYDDSRANYDDPRH PVPSPAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MASYDYDDSRANYDDPRHAPVPSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQSLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH VVNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEISLL+
Sbjct: 121 DSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEISLLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK-GLEQFTATD-----GGSSNVLKVLGYF 495
           QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK GLEQFTATD     GGSSNVLKVLGYF
Sbjct: 181 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEKEGLEQFTATDGYDYSGGSSNVLKVLGYF 240

Query: 496 SLVGLLRVHCLLGDYHTGLKCLLSIDISQ------------------------------- 497
           S+VGLLRVHCLLGDYHTGLKCLL IDISQ                               
Sbjct: 241 SMVGLLRVHCLLGDYHTGLKCLLPIDISQQGVFTSVIGSHITTIYHYGFANLMLRRYVDA 300

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BLAST of CmUC06G116540 vs. NCBI nr
Match: XP_008466039.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Cucumis melo] >KAA0038608.1 eukaryotic translation initiation factor 3 subunit L-like [Cucumis melo var. makuwa] >TYK31207.1 eukaryotic translation initiation factor 3 subunit L-like [Cucumis melo var. makuwa])

HSP 1 Score: 394.8 bits (1013), Expect = 1.1e-105
Identity = 229/398 (57.54%), Postives = 236/398 (59.30%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MASYDYDDSRANYDDPRH PV SPAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MASYDYDDSRANYDDPRHAPVSSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQSLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH VVNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEI+LL+
Sbjct: 121 DSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK-GLEQFTATD-----GGSSNVLKVLGYF 495
           QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK GLEQFTATD     GGSSNVLKVLGYF
Sbjct: 181 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEKEGLEQFTATDGYDYSGGSSNVLKVLGYF 240

Query: 496 SLVGLLRVHCLLGDYHTGLKCLLSIDISQ------------------------------- 497
           S+VGLLRVHCLLGDYHTGLKCLL IDISQ                               
Sbjct: 241 SMVGLLRVHCLLGDYHTGLKCLLPIDISQQGVFTSVIGSHITTIYHYGFANLMLRRYVDA 300

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BLAST of CmUC06G116540 vs. NCBI nr
Match: XP_022980972.1 (eukaryotic translation initiation factor 3 subunit L-like [Cucurbita maxima])

HSP 1 Score: 394.4 bits (1012), Expect = 1.4e-105
Identity = 223/397 (56.17%), Postives = 235/397 (59.19%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MA+YDYDDSRANYDDPRH PVPSPAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MATYDYDDSRANYDDPRHAPVPSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQTLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH +VNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEISLL+
Sbjct: 121 DSWDNYCSLFQVVLHGIVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEISLLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEKGLEQFTATD-----GGSSNVLKVLGYFS 495
           Q+DQAWNVYGVLNYLQAFVEKSSIIHILEEEKGLEQFT  D     GGSSNVLKVLGYFS
Sbjct: 181 QYDQAWNVYGVLNYLQAFVEKSSIIHILEEEKGLEQFTLNDGYDYSGGSSNVLKVLGYFS 240

Query: 496 LVGLLRVHCLLGDYHTGLKCLLSIDISQ-------------------------------- 497
           +VGLLRVHCLLGDYHTGLKCLL IDI+Q                                
Sbjct: 241 MVGLLRVHCLLGDYHTGLKCLLPIDITQQGVFTSVIGSHITTIYHYGFANLMLRRYVDAI 300

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BLAST of CmUC06G116540 vs. NCBI nr
Match: XP_022940278.1 (eukaryotic translation initiation factor 3 subunit L-like [Cucurbita moschata] >KAG6608082.1 Eukaryotic translation initiation factor 3 subunit L, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031717.1 Eukaryotic translation initiation factor 3 subunit L [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.1 bits (1006), Expect = 7.1e-105
Identity = 225/398 (56.53%), Postives = 236/398 (59.30%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MA+YDYDDSRANYDDPRH PVPSPAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MATYDYDDSRANYDDPRHAPVPSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQTLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH VVNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEISLL+
Sbjct: 121 DSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEISLLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK-GLEQFTATD-----GGSSNVLKVLGYF 495
           Q+DQAWNVYGVLNYLQAFVEKSSIIHILEEEK GLEQFT TD     GGSSNVLKVLGYF
Sbjct: 181 QYDQAWNVYGVLNYLQAFVEKSSIIHILEEEKEGLEQFTLTDGYDYSGGSSNVLKVLGYF 240

Query: 496 SLVGLLRVHCLLGDYHTGLKCLLSIDISQ------------------------------- 497
           S+VGLLRVHCLLGDYHTGLKCLL IDI+Q                               
Sbjct: 241 SMVGLLRVHCLLGDYHTGLKCLLPIDITQQGVFTSVIGSHITTIYHYGFANLMLRRYVDA 300

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BLAST of CmUC06G116540 vs. NCBI nr
Match: XP_023525259.1 (eukaryotic translation initiation factor 3 subunit L-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.7 bits (1005), Expect = 9.3e-105
Identity = 224/398 (56.28%), Postives = 236/398 (59.30%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MA+YDYDDSRANYDDPRH PVPSPAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MATYDYDDSRANYDDPRHAPVPSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQTLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH VVNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEISLL+
Sbjct: 121 DSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEISLLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK-GLEQFTATD-----GGSSNVLKVLGYF 495
           Q+DQAWNVYGVLNYLQAFVEKSSIIHILEEEK GLEQFT TD     GGSSNVLKVLGYF
Sbjct: 181 QYDQAWNVYGVLNYLQAFVEKSSIIHILEEEKEGLEQFTLTDGYDYSGGSSNVLKVLGYF 240

Query: 496 SLVGLLRVHCLLGDYHTGLKCLLSIDISQ------------------------------- 497
           S+VGLLRVHCLLGDYHTGLKCLL IDI+Q                               
Sbjct: 241 SMVGLLRVHCLLGDYHTGLKCLLPIDITQQGVFTSVIGSHITTIYHYGFANLMLRRYVDA 300

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BLAST of CmUC06G116540 vs. ExPASy Swiss-Prot
Match: Q8AVJ0 (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus laevis OX=8355 GN=eif3l PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.3e-36
Identity = 91/254 (35.83%), Postives = 129/254 (50.79%), Query Frame = 0


Query: 321 MQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLKQFDQAWNVYGVLNYLQAFV 380
           ++LPNQWLWD++DEF+YQFQSF +YR K   K+E+EI  L+   + WNV+ VLN L + V
Sbjct: 174 LELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIEFLRSNPKIWNVHSVLNVLHSLV 233

Query: 381 EKSSIIHILE--EEKGLEQFTATDGGSSNVLKVLGYFSLVGLLRVHCLLGDYHTGLK--- 440
           +KS+I   LE     G  +  A + G  ++ K+LGYFSLVGLLR+H LLGDY+  +K   
Sbjct: 234 DKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLE 293

Query: 441 ------------------------------------------------------------ 497
                                                                       
Sbjct: 294 NIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDSIRVFANILLYIQRTKSMFQRTTY 353

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BLAST of CmUC06G116540 vs. ExPASy Swiss-Prot
Match: Q6P878 (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus tropicalis OX=8364 GN=eif3l PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.5e-36
Identity = 91/254 (35.83%), Postives = 132/254 (51.97%), Query Frame = 0


Query: 321 MQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLKQFDQAWNVYGVLNYLQAFV 380
           ++LPNQWLWD++DEF+YQFQSF +YR K   K+E+EI  L+   + WNV+ VLN L + V
Sbjct: 174 LELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIEFLRSNPKIWNVHSVLNVLHSLV 233

Query: 381 EKSSIIHILE--EEKGLEQFTATDGGSSNVLKVLGYFSLVGLLRVHCLLGDYHTGLKCLL 440
           +KS+I   LE     G  +  A + G  ++ K+LGYFSLVGLLR+H LLGDY+  +K L 
Sbjct: 234 DKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLE 293

Query: 441 SIDIS-------------------------------------------QQVK-------- 497
           +I+++                                           Q+ K        
Sbjct: 294 NIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTY 353

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BLAST of CmUC06G116540 vs. ExPASy Swiss-Prot
Match: Q5F428 (Eukaryotic translation initiation factor 3 subunit L OS=Gallus gallus OX=9031 GN=EIF3L PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.2e-35
Identity = 90/254 (35.43%), Postives = 128/254 (50.39%), Query Frame = 0


Query: 321 MQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLKQFDQAWNVYGVLNYLQAFV 380
           ++LPNQWLWD++DEF+YQFQSF +YR K   K+E+EI  L+   + WNV+ VLN L + V
Sbjct: 176 LELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLV 235

Query: 381 EKSSIIHILE--EEKGLEQFTATDGGSSNVLKVLGYFSLVGLLRVHCLLGDYHTGLK--- 440
           +KS+I   LE     G  +  A + G  ++ K+LGYFSLVGLLR+H LLGDY+  +K   
Sbjct: 236 DKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLE 295

Query: 441 ------------------------------------------------------------ 497
                                                                       
Sbjct: 296 NIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTY 355

[Close]

BLAST of CmUC06G116540 vs. ExPASy Swiss-Prot
Match: Q3ZCK1 (Eukaryotic translation initiation factor 3 subunit L OS=Bos taurus OX=9913 GN=EIF3L PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.8e-35
Identity = 89/254 (35.04%), Postives = 128/254 (50.39%), Query Frame = 0


Query: 321 MQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLKQFDQAWNVYGVLNYLQAFV 380
           ++LPNQWLWD++DEF+YQFQSF +YR K   K+E+EI  L+   + WNV+ VLN L + V
Sbjct: 176 LELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLV 235

Query: 381 EKSSIIHILE--EEKGLEQFTATDGGSSNVLKVLGYFSLVGLLRVHCLLGDYHTGLK--- 440
           +KS+I   LE     G  +  A + G  ++ K+LGYFSLVGLLR+H LLGDY+  +K   
Sbjct: 236 DKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLE 295

Query: 441 ------------------------------------------------------------ 497
                                                                       
Sbjct: 296 NIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTY 355

[Close]

BLAST of CmUC06G116540 vs. ExPASy Swiss-Prot
Match: Q9Y262 (Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens OX=9606 GN=EIF3L PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.8e-35
Identity = 89/254 (35.04%), Postives = 128/254 (50.39%), Query Frame = 0


Query: 321 MQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLKQFDQAWNVYGVLNYLQAFV 380
           ++LPNQWLWD++DEF+YQFQSF +YR K   K+E+EI  L+   + WNV+ VLN L + V
Sbjct: 176 LELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLV 235

Query: 381 EKSSIIHILE--EEKGLEQFTATDGGSSNVLKVLGYFSLVGLLRVHCLLGDYHTGLK--- 440
           +KS+I   LE     G  +  A + G  ++ K+LGYFSLVGLLR+H LLGDY+  +K   
Sbjct: 236 DKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLE 295

Query: 441 ------------------------------------------------------------ 497
                                                                       
Sbjct: 296 NIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTY 355

[Close]

BLAST of CmUC06G116540 vs. ExPASy TrEMBL
Match: A0A5A7T6X7 (Eukaryotic translation initiation factor 3 subunit L OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004920 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 5.3e-106
Identity = 229/398 (57.54%), Postives = 236/398 (59.30%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MASYDYDDSRANYDDPRH PV SPAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MASYDYDDSRANYDDPRHAPVSSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQSLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH VVNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEI+LL+
Sbjct: 121 DSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK-GLEQFTATD-----GGSSNVLKVLGYF 495
           QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK GLEQFTATD     GGSSNVLKVLGYF
Sbjct: 181 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEKEGLEQFTATDGYDYSGGSSNVLKVLGYF 240

Query: 496 SLVGLLRVHCLLGDYHTGLKCLLSIDISQ------------------------------- 497
           S+VGLLRVHCLLGDYHTGLKCLL IDISQ                               
Sbjct: 241 SMVGLLRVHCLLGDYHTGLKCLLPIDISQQGVFTSVIGSHITTIYHYGFANLMLRRYVDA 300

[Close]

BLAST of CmUC06G116540 vs. ExPASy TrEMBL
Match: A0A1S3CQA5 (Eukaryotic translation initiation factor 3 subunit L OS=Cucumis melo OX=3656 GN=LOC103503591 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 5.3e-106
Identity = 229/398 (57.54%), Postives = 236/398 (59.30%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MASYDYDDSRANYDDPRH PV SPAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MASYDYDDSRANYDDPRHAPVSSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQSLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH VVNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEI+LL+
Sbjct: 121 DSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK-GLEQFTATD-----GGSSNVLKVLGYF 495
           QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK GLEQFTATD     GGSSNVLKVLGYF
Sbjct: 181 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEKEGLEQFTATDGYDYSGGSSNVLKVLGYF 240

Query: 496 SLVGLLRVHCLLGDYHTGLKCLLSIDISQ------------------------------- 497
           S+VGLLRVHCLLGDYHTGLKCLL IDISQ                               
Sbjct: 241 SMVGLLRVHCLLGDYHTGLKCLLPIDISQQGVFTSVIGSHITTIYHYGFANLMLRRYVDA 300

[Close]

BLAST of CmUC06G116540 vs. ExPASy TrEMBL
Match: A0A6J1ISQ6 (Eukaryotic translation initiation factor 3 subunit L OS=Cucurbita maxima OX=3661 GN=LOC111480263 PE=3 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 6.9e-106
Identity = 223/397 (56.17%), Postives = 235/397 (59.19%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MA+YDYDDSRANYDDPRH PVPSPAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MATYDYDDSRANYDDPRHAPVPSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQTLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH +VNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEISLL+
Sbjct: 121 DSWDNYCSLFQVVLHGIVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEISLLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEKGLEQFTATD-----GGSSNVLKVLGYFS 495
           Q+DQAWNVYGVLNYLQAFVEKSSIIHILEEEKGLEQFT  D     GGSSNVLKVLGYFS
Sbjct: 181 QYDQAWNVYGVLNYLQAFVEKSSIIHILEEEKGLEQFTLNDGYDYSGGSSNVLKVLGYFS 240

Query: 496 LVGLLRVHCLLGDYHTGLKCLLSIDISQ-------------------------------- 497
           +VGLLRVHCLLGDYHTGLKCLL IDI+Q                                
Sbjct: 241 MVGLLRVHCLLGDYHTGLKCLLPIDITQQGVFTSVIGSHITTIYHYGFANLMLRRYVDAI 300

[Close]

BLAST of CmUC06G116540 vs. ExPASy TrEMBL
Match: A0A6J1FNU3 (Eukaryotic translation initiation factor 3 subunit L OS=Cucurbita moschata OX=3662 GN=LOC111445947 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 3.4e-105
Identity = 225/398 (56.53%), Postives = 236/398 (59.30%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MA+YDYDDSRANYDDPRH PVPSPAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MATYDYDDSRANYDDPRHAPVPSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQTLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH VVNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEISLL+
Sbjct: 121 DSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEISLLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK-GLEQFTATD-----GGSSNVLKVLGYF 495
           Q+DQAWNVYGVLNYLQAFVEKSSIIHILEEEK GLEQFT TD     GGSSNVLKVLGYF
Sbjct: 181 QYDQAWNVYGVLNYLQAFVEKSSIIHILEEEKEGLEQFTLTDGYDYSGGSSNVLKVLGYF 240

Query: 496 SLVGLLRVHCLLGDYHTGLKCLLSIDISQ------------------------------- 497
           S+VGLLRVHCLLGDYHTGLKCLL IDI+Q                               
Sbjct: 241 SMVGLLRVHCLLGDYHTGLKCLLPIDITQQGVFTSVIGSHITTIYHYGFANLMLRRYVDA 300

[Close]

BLAST of CmUC06G116540 vs. ExPASy TrEMBL
Match: A0A0A0LH26 (Eukaryotic translation initiation factor 3 subunit L OS=Cucumis sativus OX=3659 GN=Csa_3G895800 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 1.7e-104
Identity = 226/398 (56.78%), Postives = 235/398 (59.05%), Query Frame = 0


Query: 256 MASYDYDDSRANYDDPRHVPVPSPAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK------ 315
           MA+YDYDDSRANYDDPRH PV +PAGQDIGYDPNFVPDS+KSFVVHLYRHIR+K      
Sbjct: 1   MATYDYDDSRANYDDPRHAPVSAPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETH 60

Query: 316 -------------------------------NDH-------------------------- 375
                                          NDH                          
Sbjct: 61  QMYETSFQSLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRI 120

Query: 376 -----------VVLHEVVNMQLPNQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLK 435
                      VVLH VVNMQLPNQWLWDMVDEFVYQFQSFC+YR KMKNKTEQEI+LL+
Sbjct: 121 DSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLR 180

Query: 436 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK-GLEQFTATD-----GGSSNVLKVLGYF 495
           QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEK GLEQFTATD     GGSSNVLKVLGYF
Sbjct: 181 QFDQAWNVYGVLNYLQAFVEKSSIIHILEEEKEGLEQFTATDGYDYSGGSSNVLKVLGYF 240

Query: 496 SLVGLLRVHCLLGDYHTGLKCLLSIDISQ------------------------------- 497
           S+VGLLRVHCLLGDYHTGLKCLL IDISQ                               
Sbjct: 241 SMVGLLRVHCLLGDYHTGLKCLLPIDISQQGVFTSVIGSHITTIYHYGFANLMLRRYVDA 300

[Close]

BLAST of CmUC06G116540 vs. TAIR 10
Match: AT5G25754.1 (RNA polymerase I-associated factor PAF67 )

HSP 1 Score: 284.3 bits (726), Expect = 1.9e-76
Identity = 172/373 (46.11%), Postives = 193/373 (51.74%), Query Frame = 0


Query: 279 PAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK----------------------------- 338
           P  ++ GYDPN VPDS+KSFV H+YRHIRDK                             
Sbjct: 11  PGERESGYDPNMVPDSVKSFVSHMYRHIRDKNVYEIHQMCETSFQSISERLFKDTPWPSV 70

Query: 339 --------NDH-------------------------------------VVLHEVVNMQLP 398
                   NDH                                     VVLH VVNMQLP
Sbjct: 71  EAIAPYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSYDNYCSLFQVVLHGVVNMQLP 130

Query: 399 NQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLKQFDQAWNVYGVLNYLQAFVEKSS 458
           NQWLWDMVDEFVYQFQSFC++R K+KNKTE+EI+LL+Q D+AWNVYGVLN+LQA VEKS 
Sbjct: 131 NQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQHDKAWNVYGVLNFLQALVEKSC 190

Query: 459 IIHILEEEKGLEQFTATDG----GSSNVLKVLGYFSLVGLLRVHCLLGDYHTGLKCLLSI 497
           II ILE +K   +FT TDG    G SNVLKVLGYFS+VGLLRVHCLLGDYHT LK L  I
Sbjct: 191 IIQILEHDKDGLEFTETDGYDFSGGSNVLKVLGYFSMVGLLRVHCLLGDYHTALKWLQPI 250

[Close]

BLAST of CmUC06G116540 vs. TAIR 10
Match: AT5G25757.1 (RNA polymerase I-associated factor PAF67 )

HSP 1 Score: 284.3 bits (726), Expect = 1.9e-76
Identity = 172/373 (46.11%), Postives = 193/373 (51.74%), Query Frame = 0


Query: 279 PAGQDIGYDPNFVPDSIKSFVVHLYRHIRDK----------------------------- 338
           P  ++ GYDPN VPDS+KSFV H+YRHIRDK                             
Sbjct: 11  PGERESGYDPNMVPDSVKSFVSHMYRHIRDKNVYEIHQMCETSFQSISERLFKDTPWPSV 70

Query: 339 --------NDH-------------------------------------VVLHEVVNMQLP 398
                   NDH                                     VVLH VVNMQLP
Sbjct: 71  EAIAPYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSYDNYCSLFQVVLHGVVNMQLP 130

Query: 399 NQWLWDMVDEFVYQFQSFCRYRTKMKNKTEQEISLLKQFDQAWNVYGVLNYLQAFVEKSS 458
           NQWLWDMVDEFVYQFQSFC++R K+KNKTE+EI+LL+Q D+AWNVYGVLN+LQA VEKS 
Sbjct: 131 NQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQHDKAWNVYGVLNFLQALVEKSC 190

Query: 459 IIHILEEEKGLEQFTATDG----GSSNVLKVLGYFSLVGLLRVHCLLGDYHTGLKCLLSI 497
           II ILE +K   +FT TDG    G SNVLKVLGYFS+VGLLRVHCLLGDYHT LK L  I
Sbjct: 191 IIQILEHDKDGLEFTETDGYDFSGGSNVLKVLGYFSMVGLLRVHCLLGDYHTALKWLQPI 250

The following BLAST results are available for this feature:

BLAST of CmUC06G116540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899265.1	5.8e-107	58.04	eukaryotic translation initiation factor 3 subunit L [Benincasa hispida]	[more]
XP_008466039.1	1.1e-105	57.54	PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Cucumis me...	[more]
XP_022980972.1	1.4e-105	56.17	eukaryotic translation initiation factor 3 subunit L-like [Cucurbita maxima]	[more]
XP_022940278.1	7.1e-105	56.53	eukaryotic translation initiation factor 3 subunit L-like [Cucurbita moschata] >...	[more]
XP_023525259.1	9.3e-105	56.28	eukaryotic translation initiation factor 3 subunit L-like [Cucurbita pepo subsp....	[more]

BLAST of CmUC06G116540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8AVJ0	4.3e-36	35.83	Eukaryotic translation initiation factor 3 subunit L OS=Xenopus laevis OX=8355 G...	[more]
Q6P878	9.5e-36	35.83	Eukaryotic translation initiation factor 3 subunit L OS=Xenopus tropicalis OX=83...	[more]
Q5F428	1.2e-35	35.43	Eukaryotic translation initiation factor 3 subunit L OS=Gallus gallus OX=9031 GN...	[more]
Q3ZCK1	2.8e-35	35.04	Eukaryotic translation initiation factor 3 subunit L OS=Bos taurus OX=9913 GN=EI...	[more]
Q9Y262	2.8e-35	35.04	Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens OX=9606 GN=...	[more]

BLAST of CmUC06G116540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6X7	5.3e-106	57.54	Eukaryotic translation initiation factor 3 subunit L OS=Cucumis melo var. makuwa...	[more]
A0A1S3CQA5	5.3e-106	57.54	Eukaryotic translation initiation factor 3 subunit L OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1ISQ6	6.9e-106	56.17	Eukaryotic translation initiation factor 3 subunit L OS=Cucurbita maxima OX=3661...	[more]
A0A6J1FNU3	3.4e-105	56.53	Eukaryotic translation initiation factor 3 subunit L OS=Cucurbita moschata OX=36...	[more]
A0A0A0LH26	1.7e-104	56.78	Eukaryotic translation initiation factor 3 subunit L OS=Cucumis sativus OX=3659 ...	[more]

BLAST of CmUC06G116540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25754.1	1.9e-76	46.11	RNA polymerase I-associated factor PAF67	[more]
AT5G25757.1	1.9e-76	46.11	RNA polymerase I-associated factor PAF67	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019382	Translation initiation factor 3 complex subunit L	PFAM	PF10255	Paf67	coord: 447..498 e-value: 4.2E-12 score: 45.8 coord: 315..445 e-value: 7.2E-50 score: 170.2
IPR019382	Translation initiation factor 3 complex subunit L	PANTHER	PTHR13242	EUKARYOTIC TRANSLATION INITIATION FACTOR 3	coord: 283..310 coord: 313..445
IPR019382	Translation initiation factor 3 complex subunit L	PANTHER	PTHR13242	EUKARYOTIC TRANSLATION INITIATION FACTOR 3	coord: 446..499
None	No IPR available	PANTHER	PTHR13242:SF3	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT L	coord: 283..310
None	No IPR available	PANTHER	PTHR13242:SF3	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT L	coord: 313..445
None	No IPR available	PANTHER	PTHR13242:SF3	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT L	coord: 446..499

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G116540.1	CmUC06G116540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity