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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCCACCCTGGGCGCCTACCATGCCTACAAGCAAGCCTACGCTCTGTATACATTAGCCTGCCATGCCCACCCTGTGCGCCTGCCATGCCCACCCTATGCGCCTACCATGCCCACCCTGTGCGCCTGCAATGCCCACCCTGTGCGCCTGCCATGCCCACCATGGTGGGCGCCTGCCATGCCCACCCTGGGCGCCTGCCATGCCTACAAGCAAGCCTACGCTCTGTATACATTAGCAAGTCATGCCCACCCTGTGCGCCTGCCATGCCCACCCTATGCGCCTACCATGCCCACCCTATGCGCTTGCCATGCCTACAAGCAAGCCTAA mRNA sequence ATGCCCACCCTGGGCGCCTACCATGCCTACAAGCAAGCCTACGCTCTGTATACATTAGCCTGCCATGCCCACCCTGTGCGCCTGCCATGCCCACCCTATGCGCCTACCATGCCCACCCTGTGCGCCTGCAATGCCCACCCTGTGCGCCTGCCATGCCCACCATGGTGGGCGCCTGCCATGCCCACCCTGGGCGCCTGCCATGCCTACAAGCAAGCCTACGCTCTGTATACATTAGCAAGTCATGCCCACCCTGTGCGCCTGCCATGCCCACCCTATGCGCCTACCATGCCCACCCTATGCGCTTGCCATGCCTACAAGCAAGCCTAA Coding sequence (CDS) ATGCCCACCCTGGGCGCCTACCATGCCTACAAGCAAGCCTACGCTCTGTATACATTAGCCTGCCATGCCCACCCTGTGCGCCTGCCATGCCCACCCTATGCGCCTACCATGCCCACCCTGTGCGCCTGCAATGCCCACCCTGTGCGCCTGCCATGCCCACCATGGTGGGCGCCTGCCATGCCCACCCTGGGCGCCTGCCATGCCTACAAGCAAGCCTACGCTCTGTATACATTAGCAAGTCATGCCCACCCTGTGCGCCTGCCATGCCCACCCTATGCGCCTACCATGCCCACCCTATGCGCTTGCCATGCCTACAAGCAAGCCTAA Protein sequence MPTLGAYHAYKQAYALYTLACHAHPVRLPCPPYAPTMPTLCACNAHPVRLPCPPWWAPAMPTLGACHAYKQAYALYTLASHAHPVRLPCPPYAPTMPTLCACHAYKQA
Homology
BLAST of CmUC06G116100 vs. NCBI nr
Match: XP_005774955.1 (hypothetical protein EMIHUDRAFT_56989, partial [Emiliania huxleyi CCMP1516] >EOD22526.1 hypothetical protein EMIHUDRAFT_56989, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 61.2 bits (147), Expect = 6.2e-06 Identity = 39/84 (46.43%), Postives = 40/84 (47.62%), Query Frame = 0
Query: 21 CHAHPVRLPCPPYAPTMPTLCACNAHPVRLPCPPWWAPAMPTLGACHAYKQAYALYTLAS 80
CHA P RLPCP MP L C+A P RLPCP AMP L C
Sbjct: 20 CHAPPPRLPCPSSTTAMPLLHDCHAPPPRLPCPS-STTAMPLLHDC-------------- 79
Query: 81 HAHPVRLPCPPYAPTMPTLCACHA 105
HA P RLPCP MP L CHA
Sbjct: 80 HAPPPRLPCPSSTTAMPLLHDCHA 88
BLAST of CmUC06G116100 vs. NCBI nr
Match: XP_041710063.1 (vegetative cell wall protein gp1-like [Coregonus clupeaformis]) HSP 1 Score: 55.1 bits (131), Expect = 4.4e-04 Identity = 39/103 (37.86%), Postives = 41/103 (39.81%), Query Frame = 0
Query: 20 ACHAHPVRLPCPPYAPTMPTLCACNAHPVRLPCP--------------PWWAPAMPTLGA 79
ACHA P L CPP P MP AC+A P L CP P P MP A
Sbjct: 203 ACHAPPACLSCPPSLPVMPPQPACHAPPACLSCPLSLPVMPPSACLSCPLSLPVMPPQPA 262
Query: 80 CHAYKQAYALYTLASHAHPVRLPCPPYAPTMPTLCACHAYKQA 109
CHA L CPP P MP ACHA + A
Sbjct: 263 CHAPSAC--------------LSCPPSLPVMPPQPACHAPQPA 291
BLAST of CmUC06G116100 vs. ExPASy TrEMBL
Match: R1EHU6 (Uncharacterized protein (Fragment) OS=Emiliania huxleyi OX=2903 GN=EMIHUDRAFT_56989 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06 Identity = 39/84 (46.43%), Postives = 40/84 (47.62%), Query Frame = 0
Query: 21 CHAHPVRLPCPPYAPTMPTLCACNAHPVRLPCPPWWAPAMPTLGACHAYKQAYALYTLAS 80
CHA P RLPCP MP L C+A P RLPCP AMP L C
Sbjct: 20 CHAPPPRLPCPSSTTAMPLLHDCHAPPPRLPCPS-STTAMPLLHDC-------------- 79
Query: 81 HAHPVRLPCPPYAPTMPTLCACHA 105
HA P RLPCP MP L CHA
Sbjct: 80 HAPPPRLPCPSSTTAMPLLHDCHA 88
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_005774955.1 | 6.2e-06 | 46.43 | hypothetical protein EMIHUDRAFT_56989, partial [Emiliania huxleyi CCMP1516] >EOD... | [more] |
| XP_041710063.1 | 4.4e-04 | 37.86 | vegetative cell wall protein gp1-like [Coregonus clupeaformis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| R1EHU6 | 3.0e-06 | 46.43 | Uncharacterized protein (Fragment) OS=Emiliania huxleyi OX=2903 GN=EMIHUDRAFT_56... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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