CmUC06G115670 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G115670
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	glycine-rich protein 5-like
Location	CmU531Chr06: 9066651 .. 9068639 (-)
RNA-Seq Expression	CmUC06G115670
Synteny	CmUC06G115670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTGATCCATTAAATATAAAAAATTTATTTAATTAGTAAAAGGAAATTAAAAATTATCTAGAAAATGAAGAAATTAAAAAAGTAATCGGAGAAATTTTCTCCTCACTAAAATTTCGCAGGATAGAAATTACAATAGGGGAAAAAGATGGGAACAGGAAAGTTTTCCCCTTTTCTATCGTCACCCCTCTACTTCCCATCTTTCGAATAGATGATTTTTAACATAGCTGGAAAGATGTCAAATACCAAACAGAACATATCCGCTTGGTAAGAAATCTTTGTTGTTTTTACTTAAAGAAAACTAGAAAAGGATAACAGTCACGTGACCCTCCCTGATCCCCAGCAAAACAACCATCTCTGAGAAAACTAATTAATAGAAATCAAACAAAAAGTAGAGTTCACACACAACTGCATCTGCATGCACTGCAACACATTGCATATGGCCTTAACAATTTGTACATAAATTGTGTCTCTTAAATTATTTCTCATTGTTTGCAACTAACTCTGAGAATCCAAATTTAATTTAAAGAAATTTCTCCATGTTCGAGGCTTTTCTGCGAAGAGATATAAATGTGATGCAAAATATAAAATTTTACTATAAGTCTACAGCACCCTTCATTTATTACTCTCAACAGCCTCTTCCCTCTCAAATTGCCCTGTAAAATCCCATTCCCATGCACGAAAACTTCAGGTGAGTTTAGAGAGGGTTGAGAGAGGGAAATGGCGAAAATTTTCATCATTGCTGTTGCGTTTGTTTTCTTAATCGTGAATGCGGGTGCCCGAAACGTTCTAGGTAATTAATCGTTATACTATTACTAAACCTAAAAGCTTAGTCTAGTCGATTACACAATATATCTAGACATGTTTGATGGTTAAGATTTTGTTTTTAGCTTTCTATACTTAAATATTGTGTTTTTTTCTTTACCATTCCTTTTTTGTGGATTTCAAATATTTTTATAAAAACACTTAAATTCTCTATTGGATTCCAATTAAAAAATTAAGTTATTGAAAACTATTTTTTTTTTTCTTCTTCTTCTTTCTTTCTTTTTAAGTCAAATTGTTGCCTACAGTGTGAAAATTAGATAAGGGAGAAAAAAAAAAATAATTTATAAATAGAAGTAGTGTTTATAAAACTTTAAAAATCTAAAATCGAAAAACCAAATGGTTATCAAATGGAATTTGATACTTTGTAATTACTCATATTTGTTTTTTAAAATAATATCAAATTATCACATAAAAATGTGCGGTAAAAGAATTGAATAGAAAGTAAAAGTATATAAATCACTAAATTATGCCCATATGTTGGCAACAACTCACTCCATTTGTGAGTTTAAAAAATAAACTAATGCAACAGTAGTTAGTTGTCAGATACTAATGGAGAGAAAATGATACTAATTTGGGCACACGCAAAGGAATAGACAATTTTTTTTAATTCAACAATTAGAAAGTGAGAATCAAACTATCAACCATTTTACAATTAGAAAGTGAGAATCAAACTATCAACCTTTCTTTAAAATGGTATAACTAATGCTTTATCCACTAACTATACTCGGGTTGGGGAGATATAATACGATAAAATACAAGTATTACATTTATTTTATGCAAGACCAACAAGGACACCACACACACGGTCTCCTACTTTAATTACAACTAAAATCAAATGTTCATTTTGTTAACGTATATATTCTTAACACAGGCGGTGGCAGTAGGGAGGAGGAGTACCAAACCCTAGAACAGGCAGCGGCACCCATGGCAGATCCGCCGAGCAGCGGTGGTGTTGTTGATCAGAAGAGCATCTTTGGTGGGGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGGTTATTTCCACATCTTGGTGGGGTTGGCGTAATCGGCAAGTACGGCGGAATTGGTGGTGGCATTGGCTTCGGACACAGTGGCTTTGGAGGCGGAGTTGGCGGCGTCGGTGGCATGGGTGGTGGAGTTGTGCCATTTCCTTGA

mRNA sequence

ATGGCAAAGAGGGAAATGGCGAAAATTTTCATCATTGCTGTTGCGTTTGTTTTCTTAATCGTGAATGCGGGTGCCCGAAACGTTCTAGGCGGTGGCAGTAGGGAGGAGGAGTACCAAACCCTAGAACAGGCAGCGGCACCCATGGCAGATCCGCCGAGCAGCGGTGGTGTTGTTGATCAGAAGAGCATCTTTGGTGGGGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGGTTATTTCCACATCTTGGTGGGGTTGGCGTAATCGGCAAGTACGGCGGAATTGGTGGTGGCATTGGCTTCGGACACAGTGGCTTTGGAGGCGGAGTTGGCGGCGTCGGTGGCATGGGTGGTGGAGTTGTGCCATTTCCTTGA

Coding sequence (CDS)

ATGGCAAAGAGGGAAATGGCGAAAATTTTCATCATTGCTGTTGCGTTTGTTTTCTTAATCGTGAATGCGGGTGCCCGAAACGTTCTAGGCGGTGGCAGTAGGGAGGAGGAGTACCAAACCCTAGAACAGGCAGCGGCACCCATGGCAGATCCGCCGAGCAGCGGTGGTGTTGTTGATCAGAAGAGCATCTTTGGTGGGGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGGTTATTTCCACATCTTGGTGGGGTTGGCGTAATCGGCAAGTACGGCGGAATTGGTGGTGGCATTGGCTTCGGACACAGTGGCTTTGGAGGCGGAGTTGGCGGCGTCGGTGGCATGGGTGGTGGAGTTGTGCCATTTCCTTGA

Protein sequence

MAKREMAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMGGGVVPFP

Homology

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BLAST of CmUC06G115670 vs. NCBI nr
Match: XP_038906734.1 (glycine-rich protein 5-like [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-43
Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 6   MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFG 65
           MAKIFI+ VAFVFL VNAG RNV  GGS+ E+YQTLEQAAAP+ADPPSS GV DQK+IFG
Sbjct: 1   MAKIFIVVVAFVFLFVNAGGRNVPAGGSK-EDYQTLEQAAAPVADPPSSSGVDDQKNIFG 60

Query: 66  GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMGGGVVPFP 125
           GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGH GFGGGVGGVGG+GGG VPFP
Sbjct: 61  GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGFVPFP 119

[Close]

BLAST of CmUC06G115670 vs. NCBI nr
Match: XP_031736587.1 (glycine-rich protein 5-like isoform X3 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 94/121 (77.69%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 6   MAKIFIIAVAFVFLIVNAGARNVLG-GGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIF 65
           MAK F+I + FVFLI+N   RNV G GG R+E+Y+TLE+AAAP+A+PPS GGV DQK+IF
Sbjct: 1   MAKYFVILITFVFLIMNVDGRNVPGAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIF 60

Query: 66  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMGGGVVPF 125
           GGVG FAGMGGYIGGLFPHLGGVGVIGKYGGIGGG G GH GFGGGVGGVGG+GGG+VPF
Sbjct: 61  GGVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGFGVGHGGFGGGVGGVGGIGGGLVPF 120

[Close]

BLAST of CmUC06G115670 vs. NCBI nr
Match: XP_008460740.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo] >KAA0032005.1 glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa] >TYK16826.1 glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 7.9e-37
Identity = 90/120 (75.00%), Postives = 100/120 (83.33%), Query Frame = 0


Query: 6   MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFG 65
           MAK  ++ VAFVF I+N   R V  G SR+ EYQTLE+AA+P+A+PP  GGV DQK+IFG
Sbjct: 1   MAKKIVVLVAFVFFIMNVDGRKVPEGASRQGEYQTLERAASPVAEPPCRGGVDDQKNIFG 60

Query: 66  GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMGGGVVPFP 125
           GVGGF GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGH GFG GVGGVGG+GGGVVPFP
Sbjct: 61  GVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPFP 120

[Close]

BLAST of CmUC06G115670 vs. NCBI nr
Match: XP_031736586.1 (ctenidin-3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 6   MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFG 65
           MAK F+I + FVFLI+N   RNV  GG R+E+Y+TLE+AAAP+A+PPS GGV DQK+IFG
Sbjct: 1   MAKYFVILITFVFLIMNVDGRNVPAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFG 60

Query: 66  GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMG 119
           GVG FAGMGGYIGGLFPHLGGVGVIGKYGGIGGG G GH GFGGGVGGVGG+G
Sbjct: 61  GVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGFGVGHGGFGGGVGGVGGIG 113

[Close]

BLAST of CmUC06G115670 vs. NCBI nr
Match: XP_031736585.1 (elastin-like isoform X1 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 7.4e-35
Identity = 88/114 (77.19%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 6   MAKIFIIAVAFVFLIVNAGARNVLG-GGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIF 65
           MAK F+I + FVFLI+N   RNV G GG R+E+Y+TLE+AAAP+A+PPS GGV DQK+IF
Sbjct: 1   MAKYFVILITFVFLIMNVDGRNVPGAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIF 60

Query: 66  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMG 119
           GGVG FAGMGGYIGGLFPHLGGVGVIGKYGGIGGG G GH GFGGGVGGVGG+G
Sbjct: 61  GGVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGFGVGHGGFGGGVGGVGGIG 114

[Close]

BLAST of CmUC06G115670 vs. ExPASy TrEMBL
Match: A0A5D3D259 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001010 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.8e-37
Identity = 90/120 (75.00%), Postives = 100/120 (83.33%), Query Frame = 0


Query: 6   MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFG 65
           MAK  ++ VAFVF I+N   R V  G SR+ EYQTLE+AA+P+A+PP  GGV DQK+IFG
Sbjct: 1   MAKKIVVLVAFVFFIMNVDGRKVPEGASRQGEYQTLERAASPVAEPPCRGGVDDQKNIFG 60

Query: 66  GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMGGGVVPFP 125
           GVGGF GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGH GFG GVGGVGG+GGGVVPFP
Sbjct: 61  GVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPFP 120

[Close]

BLAST of CmUC06G115670 vs. ExPASy TrEMBL
Match: A0A1S3CEA9 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499502 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.8e-37
Identity = 90/120 (75.00%), Postives = 100/120 (83.33%), Query Frame = 0


Query: 6   MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFG 65
           MAK  ++ VAFVF I+N   R V  G SR+ EYQTLE+AA+P+A+PP  GGV DQK+IFG
Sbjct: 1   MAKKIVVLVAFVFFIMNVDGRKVPEGASRQGEYQTLERAASPVAEPPCRGGVDDQKNIFG 60

Query: 66  GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMGGGVVPFP 125
           GVGGF GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGH GFG GVGGVGG+GGGVVPFP
Sbjct: 61  GVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPFP 120

[Close]

BLAST of CmUC06G115670 vs. ExPASy TrEMBL
Match: A0A6J1HL05 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.4e-31
Identity = 89/122 (72.95%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 6   MAKI--FIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSI 65
           MAKI   ++ V FV L+V+A  RNV GGGS + +   L+ A AP+A  PSS   VDQK+I
Sbjct: 1   MAKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGD-GMLDLAVAPVAGQPSSND-VDQKNI 60

Query: 66  FGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMGGGVVP 125
           +GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGH GFGGGVGGVGG+GGGVVP
Sbjct: 61  YGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVP 120

[Close]

BLAST of CmUC06G115670 vs. ExPASy TrEMBL
Match: A0A6J1KIQ3 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.8e-31
Identity = 85/117 (72.65%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 9   IFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVG 68
           + ++ V FV L+V+A  RNV GGGS + +   L+ A AP+A  PSS   VDQK+I+GGVG
Sbjct: 6   VVVVVVVFVLLVVHANGRNVPGGGSGDGD-GMLDLAVAPVAGQPSSND-VDQKNIYGGVG 65

Query: 69  GFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGGVGGVGGMGGGVVPFP 126
           GFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGH GFGGGVGGVGG+GGGVVPFP
Sbjct: 66  GFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPFP 120

[Close]

BLAST of CmUC06G115670 vs. ExPASy TrEMBL
Match: A0A6J1CDU6 (WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009813 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.5e-22
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 9   IFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKS-IFGGV 68
           +F++  AFV L+V+A  R+V G    +++ QTLE A  P+ADPPSSGGV +QK  IFGGV
Sbjct: 6   VFVVLAAFVLLVVHASGRHVPGHDRSDDKDQTLELAPTPVADPPSSGGVREQKQIIFGGV 65

Query: 69  GGFAGMGGYIGGLFPHL--GGVGVIGKYGGIGGGIGF------GHSGFGGGVGGVGGMGG 126
           GGFAGMGG++GGLFPHL  GGVG IGK+GGIGGG G       G  G GGG GGVGG  G
Sbjct: 66  GGFAGMGGFVGGLFPHLGFGGVGGIGKFGGIGGGTGIIPGGVGGIGGVGGGAGGVGGGVG 125

[Close]

BLAST of CmUC06G115670 vs. TAIR 10
Match: AT1G04660.1 (glycine-rich protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-07
Identity = 62/132 (46.97%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 11  IIAVAFVFLIVNAGARNVLG----GGSREEEYQTLEQAAAPMAD--PPSSGGVVDQKSIF 70
           ++ V      V A AR V G    G +   +  T     A  AD  PP S G  D+K I 
Sbjct: 7   VVCVLLAISFVCARARQVPGESDEGKTTGHDDTTTMPMHAKAADQLPPKSVG--DKKCIG 66

Query: 71  G--GVGGFAGMGGY--IGGL-FPHLGGVGVIGKYGGIGGGIGFG--HS--------GFGG 122
           G  GVGGFAG+GG   +GGL  P +GG+G IGKYGGIGG  G G  HS        G GG
Sbjct: 67  GVAGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAAGIGGFHSIGGVGGLGGVGG 126

The following BLAST results are available for this feature:

BLAST of CmUC06G115670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906734.1	1.5e-43	86.67	glycine-rich protein 5-like [Benincasa hispida]	[more]
XP_031736587.1	1.1e-38	77.69	glycine-rich protein 5-like isoform X3 [Cucumis sativus]	[more]
XP_008460740.1	7.9e-37	75.00	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo] >KAA0...	[more]
XP_031736586.1	1.5e-35	76.99	ctenidin-3-like isoform X2 [Cucumis sativus]	[more]
XP_031736585.1	7.4e-35	77.19	elastin-like isoform X1 [Cucumis sativus]	[more]

BLAST of CmUC06G115670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G115670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D259	3.8e-37	75.00	Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CEA9	3.8e-37	75.00	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1HL05	1.4e-31	72.95	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 S...	[more]
A0A6J1KIQ3	1.8e-31	72.65	glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=...	[more]
A0A6J1CDU6	3.5e-22	59.69	WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]

BLAST of CmUC06G115670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04660.1	2.4e-07	46.97	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463:SF12	GLYCINE-RICH PROTEIN	coord: 6..120
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 6..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G115670.1	CmUC06G115670.1	mRNA