CmUC06G115620 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G115620
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	S-protein homolog
Location	CmU531Chr06: 8981127 .. 8981539 (+)
RNA-Seq Expression	CmUC06G115620
Synteny	CmUC06G115620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCATCATTAGCACTTGTATTCCTAATGTTATTGTTGTTGCCCATTTGCCTGCATGCTACAGATCAATTAATCTCACTTCTACCAGAAACTACGGTCACTATTATCAACGAGGTGGCTGGCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAACAGTTCATATTATAGAGTCAGATAGAAGCTACTCATTTACCTTCAGACCGAGCGTTTGAGGGATGATGTTATTTTACTGTAGCTTGGAATGGATTCAAGGTCAAGTCCACACTACTTCACTATTTACGACTTCAAAAGAGATGCAAAGACTTGCACCAACTGCAAATGGCTCGTTTACGCAAGTGGCCCCTGTTTGCAACACTCTGAAACTTCGATCACTTGTTCTCCTTGGATTAAGAATGCCCTTGAGTGA

mRNA sequence

ATGGCCTCATCATTAGCACTTGTATTCCTAATGTTATTGTTGTTGCCCATTTGCCTGCATGCTACAGATCAATTAATCTCACTTCTACCAGAAACTACGGTCACTATTATCAACGAGGTGGCTGGCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAACAGTTCATATTATAGAGTCAGATAGAAGCTACTCATTTACCTTCAGACCGAGCCTTGGAATGGATTCAAGGTCAAGTCCACACTACTTCACTATTTACGACTTCAAAAGAGATGCAAAGACTTGCACCAACTGCAAATGGCTCGTTTACGCAAGTGGCCCCTGTTTGCAACACTCTGAAACTTCGATCACTTGTTCTCCTTGGATTAAGAATGCCCTTGAGTGA

Coding sequence (CDS)

ATGGCCTCATCATTAGCACTTGTATTCCTAATGTTATTGTTGTTGCCCATTTGCCTGCATGCTACAGATCAATTAATCTCACTTCTACCAGAAACTACGGTCACTATTATCAACGAGGTGGCTGGCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAACAGTTCATATTATAGAGTCAGATAGAAGCTACTCATTTACCTTCAGACCGAGCCTTGGAATGGATTCAAGGTCAAGTCCACACTACTTCACTATTTACGACTTCAAAAGAGATGCAAAGACTTGCACCAACTGCAAATGGCTCGTTTACGCAAGTGGCCCCTGTTTGCAACACTCTGAAACTTCGATCACTTGTTCTCCTTGGATTAAGAATGCCCTTGAGTGA

Protein sequence

MASSLALVFLMLLLLPICLHATDQLISLLPETTVTIINEVAGPLLGIHCRSKQTVHIIESDRSYSFTFRPSLGMDSRSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE

Homology

[Close]

BLAST of CmUC06G115620 vs. NCBI nr
Match: ABY56091.1 (self-incompatibility protein 1 [Cucumis melo] >ABY56095.1 self-incompatibility protein 3 [Cucumis melo] >ABY56096.1 self-incompatibility protein 4 [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 4.7e-45
Identity = 98/139 (70.50%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MASSLALVFLMLLLLPICLHATDQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHI 60
           M SSLAL F M LLLPI LHATD+LISLLPETTVTI+NEV GPLLGIHCRSKQ    V++
Sbjct: 1   MTSSLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNV 60

Query: 61  IESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPC 120
           + SD+SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPC
Sbjct: 61  VSSDKSYSFNFRPNVWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPC 120

Query: 121 LQHSETSITCSPWIKNALE 128
           LQHSETSITC PW KNA E
Sbjct: 121 LQHSETSITCFPWNKNAPE 139

[Close]

BLAST of CmUC06G115620 vs. NCBI nr
Match: ABY56092.1 (self-incompatibility protein 2 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-43
Identity = 94/135 (69.63%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 5   LALVFLMLLLLPICLHATDQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHIIESD 64
           +AL F M LLLPI LHATD+LISLLPETTVTI+NEV GPLLGIHCRSKQ    V+++ SD
Sbjct: 75  IALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSD 134

Query: 65  RSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHS 124
           +SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPCLQHS
Sbjct: 135 KSYSFNFRPNVWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPCLQHS 194

Query: 125 ETSITCSPWIKNALE 128
           ETSITC PW KNA E
Sbjct: 195 ETSITCFPWNKNAPE 209

[Close]

BLAST of CmUC06G115620 vs. NCBI nr
Match: KAA0046095.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-39
Identity = 84/129 (65.12%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 11  MLLLLPICLHATDQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHIIESDRSYSFT 70
           M LLLPI L ATD+LISLLPETTV I+NEV GPLLGIHCRSKQ    V+++  D+SYSF 
Sbjct: 1   MFLLLPISLSATDELISLLPETTVAIVNEVGGPLLGIHCRSKQDDLGVNVVSPDKSYSFN 60

Query: 71  FRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITC 128
           F P++   +         +  PHYFTIYDFKRD KTCTNC+WL+YASGPCLQHS+TS+TC
Sbjct: 61  FGPNIWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLIYASGPCLQHSKTSVTC 120

[Close]

BLAST of CmUC06G115620 vs. NCBI nr
Match: KAA0046284.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 7.2e-38
Identity = 80/117 (68.38%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 23  DQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS--- 82
           ++LISLLPETTVTI+NEV GPLLGIHCRSKQ    V+++ SD+SYSF FRP++   +   
Sbjct: 70  NELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNIWGTTLFY 129

Query: 83  ------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE 128
                 +  PHYFTIYDFKRD KTCTNC+WLVYASGPCLQHSETSITC PW KNA E
Sbjct: 130 CVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPCLQHSETSITCFPWNKNAPE 186

[Close]

BLAST of CmUC06G115620 vs. NCBI nr
Match: KAA0046083.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 11 MLLLLPICLHATDQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHIIESDRSYSFT 70
          M LLLPI L A D+LISLLPETTVTI+NEV GPLLGIH R KQ    V+++ SD+SYSF 
Sbjct: 1  MFLLLPISLRAIDELISLLPETTVTIVNEVGGPLLGIHYRFKQDDLGVNVVSSDKSYSFN 60

Query: 71 FRPSL 73
          FRP++
Sbjct: 61 FRPNI 65

[Close]

BLAST of CmUC06G115620 vs. ExPASy TrEMBL
Match: B0F817 (S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.3e-45
Identity = 98/139 (70.50%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MASSLALVFLMLLLLPICLHATDQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHI 60
           M SSLAL F M LLLPI LHATD+LISLLPETTVTI+NEV GPLLGIHCRSKQ    V++
Sbjct: 1   MTSSLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNV 60

Query: 61  IESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPC 120
           + SD+SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPC
Sbjct: 61  VSSDKSYSFNFRPNVWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPC 120

Query: 121 LQHSETSITCSPWIKNALE 128
           LQHSETSITC PW KNA E
Sbjct: 121 LQHSETSITCFPWNKNAPE 139

[Close]

BLAST of CmUC06G115620 vs. ExPASy TrEMBL
Match: B0F818 (S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-43
Identity = 94/135 (69.63%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 5   LALVFLMLLLLPICLHATDQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHIIESD 64
           +AL F M LLLPI LHATD+LISLLPETTVTI+NEV GPLLGIHCRSKQ    V+++ SD
Sbjct: 75  IALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSD 134

Query: 65  RSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHS 124
           +SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPCLQHS
Sbjct: 135 KSYSFNFRPNVWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPCLQHS 194

Query: 125 ETSITCSPWIKNALE 128
           ETSITC PW KNA E
Sbjct: 195 ETSITCFPWNKNAPE 209

[Close]

BLAST of CmUC06G115620 vs. ExPASy TrEMBL
Match: A0A5A7TXE8 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00180 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-39
Identity = 84/129 (65.12%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 11  MLLLLPICLHATDQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHIIESDRSYSFT 70
           M LLLPI L ATD+LISLLPETTV I+NEV GPLLGIHCRSKQ    V+++  D+SYSF 
Sbjct: 1   MFLLLPISLSATDELISLLPETTVAIVNEVGGPLLGIHCRSKQDDLGVNVVSPDKSYSFN 60

Query: 71  FRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITC 128
           F P++   +         +  PHYFTIYDFKRD KTCTNC+WL+YASGPCLQHS+TS+TC
Sbjct: 61  FGPNIWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLIYASGPCLQHSKTSVTC 120

[Close]

BLAST of CmUC06G115620 vs. ExPASy TrEMBL
Match: A0A5A7TT98 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold384G00010 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.5e-38
Identity = 80/117 (68.38%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 23  DQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS--- 82
           ++LISLLPETTVTI+NEV GPLLGIHCRSKQ    V+++ SD+SYSF FRP++   +   
Sbjct: 70  NELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNIWGTTLFY 129

Query: 83  ------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE 128
                 +  PHYFTIYDFKRD KTCTNC+WLVYASGPCLQHSETSITC PW KNA E
Sbjct: 130 CVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPCLQHSETSITCFPWNKNAPE 186

[Close]

BLAST of CmUC06G115620 vs. ExPASy TrEMBL
Match: A0A5A7TR91 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00040 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.7e-13
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 11 MLLLLPICLHATDQLISLLPETTVTIINEVAGPLLGIHCRSKQT---VHIIESDRSYSFT 70
          M LLLPI L A D+LISLLPETTVTI+NEV GPLLGIH R KQ    V+++ SD+SYSF 
Sbjct: 1  MFLLLPISLRAIDELISLLPETTVTIVNEVGGPLLGIHYRFKQDDLGVNVVSSDKSYSFN 60

Query: 71 FRPSL 73
          FRP++
Sbjct: 61 FRPNI 65

The following BLAST results are available for this feature:

BLAST of CmUC06G115620 vs. NCBI nr


Match Name	E-value	Identity	Description
ABY56091.1	4.7e-45	70.50	self-incompatibility protein 1 [Cucumis melo] >ABY56095.1 self-incompatibility p...	[more]
ABY56092.1	2.6e-43	69.63	self-incompatibility protein 2 [Cucumis melo]	[more]
KAA0046095.1	2.9e-39	65.12	self-incompatibility protein 1 [Cucumis melo var. makuwa]	[more]
KAA0046284.1	7.2e-38	68.38	self-incompatibility protein 1 [Cucumis melo var. makuwa]	[more]
KAA0046083.1	1.8e-12	67.69	self-incompatibility protein 1 [Cucumis melo var. makuwa]	[more]

BLAST of CmUC06G115620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G115620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B0F817	2.3e-45	70.50	S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1	[more]
B0F818	1.2e-43	69.63	S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1	[more]
A0A5A7TXE8	1.4e-39	65.12	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00...	[more]
A0A5A7TT98	3.5e-38	68.38	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold384G00...	[more]
A0A5A7TR91	8.7e-13	67.69	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00...	[more]

BLAST of CmUC06G115620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 33..121 e-value: 6.6E-9 score: 36.2
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 18..121
None	No IPR available	PANTHER	PTHR31232:SF43	S-PROTEIN HOMOLOG 18-RELATED	coord: 18..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G115620.1	CmUC06G115620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region