CmUC06G115490 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G115490
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	late embryogenesis abundant protein 1-like
Location	CmU531Chr06: 8688848 .. 8689688 (-)
RNA-Seq Expression	CmUC06G115490
Synteny	CmUC06G115490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAACATGCAACAAAGTTTAAATGCTGGCCAAACCAAAGGCCAGACCCAGGTCACACCAACTCTCTACTTTCTTTCTTTTTTTCCTCTTTATTTTATATATATTTCTATAAATCTCTTGAAACTTAAACTTTATTTTAATCTGTAAACTTATTTGCCTCTATATTTTAGAAGTTCTGTGGAGATTTCTCATTTTTGCTTAATTATTGGTTAGATACTGACATTCTCTTAAATTGAAATTCTTCTCTTTAATTTATCCTTTTTTTTCCGTTTTTTTTTTTTTTTTTTTTTGTCAAATTAGATAAAATTGTTTCAAAGTACCCAAACAAAAATAGAAACAGTCTCAAAAGTGTATATATATATATATACCAAAATGATATTTTGACCTTACCTGTTCTTGTCAAATTTTTGCACTTTGAAAATATAAAATATGACATTGAAAGTGTAAAATCTAAATGTTTTGAAAATATAATTTGTTTTTGGGGGTTTGGAATGAGGGCAGGCAAGAACAGAAGAATGGATGGAAGCGATCAAAAGCCCAACAAGTGAACCAAGAGAGATGTCTTGTAATTCAGGCCAACCTCAGCTCTCTGCTCCACACTCTGCTCATCAAGAGAAACAAGAACCCACTACTTTTCTCCAACAGGTTCCATTTTTTTTTTTTTAATTATATATATATATATATATATATATATATATTTGAAATTGTTTTTATTCATATGATATAATTGTAGTTGTAATGTTATAATTTGTTGCAGACTGGAGAGAAGATGGTTCACATGGCTCAGGATGCAGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGA

mRNA sequence

ATGTCTAACATGCAACAAAGTTTAAATGCTGGCCAAACCAAAGGCCAGACCCAGATAAAATTGTTTCAAAGTACCCAAACAAAAATAGAAACAGTCTCAAAAGCAAGAACAGAAGAATGGATGGAAGCGATCAAAAGCCCAACAAGTGAACCAAGAGAGATGTCTTGTAATTCAGGCCAACCTCAGCTCTCTGCTCCACACTCTGCTCATCAAGAGAAACAAGAACCCACTACTTTTCTCCAACAGACTGGAGAGAAGATGGTTCACATGGCTCAGGATGCAGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGA

Coding sequence (CDS)

ATGTCTAACATGCAACAAAGTTTAAATGCTGGCCAAACCAAAGGCCAGACCCAGATAAAATTGTTTCAAAGTACCCAAACAAAAATAGAAACAGTCTCAAAAGCAAGAACAGAAGAATGGATGGAAGCGATCAAAAGCCCAACAAGTGAACCAAGAGAGATGTCTTGTAATTCAGGCCAACCTCAGCTCTCTGCTCCACACTCTGCTCATCAAGAGAAACAAGAACCCACTACTTTTCTCCAACAGACTGGAGAGAAGATGGTTCACATGGCTCAGGATGCAGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGA

Protein sequence

MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

Homology

[Close]

BLAST of CmUC06G115490 vs. NCBI nr
Match: KAA0031971.1 (late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK16791.1 late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 80/112 (71.43%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSG 60
           MSNMQQSLNAGQTKGQTQ                ARTEEWMEA K  PTSEPR+MS NS 
Sbjct: 1   MSNMQQSLNAGQTKGQTQ----------------ARTEEWMEATKLGPTSEPRDMSSNSA 60

Query: 61  QPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61  QAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of CmUC06G115490 vs. NCBI nr
Match: XP_008460707.2 (PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 80/112 (71.43%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSG 60
           MSNMQQSLNAGQTKGQTQ                ARTEEWMEA K  PTSEPR+MS NS 
Sbjct: 49  MSNMQQSLNAGQTKGQTQ----------------ARTEEWMEATKLGPTSEPRDMSSNSA 108

Query: 61  QPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 109 QAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 144

[Close]

BLAST of CmUC06G115490 vs. NCBI nr
Match: XP_011649123.1 (late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetical protein Csa_005950 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24
Identity = 75/112 (66.96%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSG 60
           MSNMQQSLNAGQTKGQTQ                 RTEEWMEA K  PT+EP +MS NS 
Sbjct: 1   MSNMQQSLNAGQTKGQTQ----------------ERTEEWMEATKLGPTNEPGDMSSNSA 60

Query: 61  QPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           Q QL   SA HS HQ  QEP + LQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61  QAQLCANSAQHSTHQHDQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of CmUC06G115490 vs. NCBI nr
Match: XP_016902588.1 (PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 67/88 (76.14%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 25  TQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFL 84
           TQ KIE    ARTEEWMEA K  PTSEPR+MS NS Q QL   SA HS HQ  QEPT+FL
Sbjct: 2   TQEKIE----ARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFL 61

Query: 85  QQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           QQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 62  QQTGEKMVHMAQGAVDTVKETLGMGDKK 85

[Close]

BLAST of CmUC06G115490 vs. NCBI nr
Match: XP_023000573.1 (late embryogenesis abundant protein 1-like [Cucurbita maxima])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 67/109 (61.47%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIKSPTSEPRE-MSCNSG 60
           MS+MQQS NA QT                +++S+ARTEEWMEA +S  +EPR+ +  +S 
Sbjct: 1   MSSMQQSFNADQT----------------QSLSQARTEEWMEATQSTGNEPRDILPTDSA 60

Query: 61  QPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           Q QL    SAH +KQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
Sbjct: 61  QAQL----SAHHDKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 89

[Close]

BLAST of CmUC06G115490 vs. ExPASy TrEMBL
Match: A0A5A7SQZ2 (Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00540 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.1e-28
Identity = 80/112 (71.43%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSG 60
           MSNMQQSLNAGQTKGQTQ                ARTEEWMEA K  PTSEPR+MS NS 
Sbjct: 1   MSNMQQSLNAGQTKGQTQ----------------ARTEEWMEATKLGPTSEPRDMSSNSA 60

Query: 61  QPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61  QAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of CmUC06G115490 vs. ExPASy TrEMBL
Match: A0A1S3CCL5 (late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.1e-28
Identity = 80/112 (71.43%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSG 60
           MSNMQQSLNAGQTKGQTQ                ARTEEWMEA K  PTSEPR+MS NS 
Sbjct: 49  MSNMQQSLNAGQTKGQTQ----------------ARTEEWMEATKLGPTSEPRDMSSNSA 108

Query: 61  QPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 109 QAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 144

[Close]

BLAST of CmUC06G115490 vs. ExPASy TrEMBL
Match: A0A0A0LI39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.4e-25
Identity = 75/112 (66.96%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSG 60
           MSNMQQSLNAGQTKGQTQ                 RTEEWMEA K  PT+EP +MS NS 
Sbjct: 1   MSNMQQSLNAGQTKGQTQ----------------ERTEEWMEATKLGPTNEPGDMSSNSA 60

Query: 61  QPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           Q QL   SA HS HQ  QEP + LQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61  QAQLCANSAQHSTHQHDQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of CmUC06G115490 vs. ExPASy TrEMBL
Match: A0A1S4E2Z2 (late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.1e-22
Identity = 67/88 (76.14%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 25  TQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFL 84
           TQ KIE    ARTEEWMEA K  PTSEPR+MS NS Q QL   SA HS HQ  QEPT+FL
Sbjct: 2   TQEKIE----ARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFL 61

Query: 85  QQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           QQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 62  QQTGEKMVHMAQGAVDTVKETLGMGDKK 85

[Close]

BLAST of CmUC06G115490 vs. ExPASy TrEMBL
Match: A0A6J1KN05 (late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111494812 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.4e-21
Identity = 67/109 (61.47%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIKSPTSEPRE-MSCNSG 60
           MS+MQQS NA QT                +++S+ARTEEWMEA +S  +EPR+ +  +S 
Sbjct: 1   MSSMQQSFNADQT----------------QSLSQARTEEWMEATQSTGNEPRDILPTDSA 60

Query: 61  QPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 109
           Q QL    SAH +KQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
Sbjct: 61  QAQL----SAHHDKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 89

[Close]

BLAST of CmUC06G115490 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-05
Identity = 35/107 (32.71%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 5   QQSLNAGQTKGQTQIKLFQSTQTKIETVSKA--RTEEWMEAIKSPTSEPREMSCN-SGQP 64
           QQ  NAGQ +GQ Q K  Q T++  +T   A  +T +  ++ +   ++  + + + +   
Sbjct: 3   QQQFNAGQNRGQAQEKAEQWTESAKQTAQSACDKTADLTQSARDKAADLTQSARDKTADG 62

Query: 65  QLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 109
             SA  SA   +++      QTGE + +MAQ A+D VK +LGM +KK
Sbjct: 63  SHSANKSAQHNQEQAAGLFGQTGESVKNMAQGALDGVKNSLGMNEKK 109

The following BLAST results are available for this feature:

BLAST of CmUC06G115490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031971.1	1.7e-27	71.43	late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008460707.2	1.7e-27	71.43	PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo]	[more]
XP_011649123.1	1.7e-24	66.96	late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetic...	[more]
XP_016902588.1	1.1e-21	76.14	PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo]	[more]
XP_023000573.1	1.5e-20	61.47	late embryogenesis abundant protein 1-like [Cucurbita maxima]	[more]

BLAST of CmUC06G115490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G115490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQZ2	8.1e-28	71.43	Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CCL5	8.1e-28	71.43	late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LI39	8.4e-25	66.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1	[more]
A0A1S4E2Z2	5.1e-22	76.14	late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1KN05	7.4e-21	61.47	late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CmUC06G115490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13560.1	1.5e-05	32.71	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..77
None	No IPR available	PANTHER	PTHR34191:SF20	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..107
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G115490.1	CmUC06G115490.1	mRNA