Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAATTCAATCGCCCTTTGTTTCTTCAGGCCCTCCTCCTCCACCGCCGCGGCCATGGCTGAATTTGGCCGAGGAACCGCCGCCGATCTCCACCATCTACGCCCTCTTCCAATTCCCGGCAGTCCGCTTGTCGCTTGCCGAATCTGCGACGCTGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCACGTGTCCGATGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAGCCAAACGCATCGGTTTCCGCCTGGTCCCCCGTTCTTAACGCCGCCACGAGCGTCGGCGCTGTTTCTGCCAAGTAGATTTTCAGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGCGCCGCCGCCCGTCGGTCGGTACTTTACGAATTTGATTGTGACGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAACCAATTGGAGAAATGTTTACCGAAAGTGGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACTTGACCCTGAAGCTGTGA
mRNA sequence
ATGCAAAATTCAATCGCCCTTTGTTTCTTCAGGCCCTCCTCCTCCACCGCCGCGGCCATGGCTGAATTTGGCCGAGGAACCGCCGCCGATCTCCACCATCTACGCCCTCTTCCAATTCCCGGCAGTCCGCTTGTCGCTTGCCGAATCTGCGACGCTGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCACGTGTCCGATGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAGCCAAACGCATCGGTTTCCGCCTGGTCCCCCGTTCTTAACGCCGCCACGAGCGTCGGCGCTGTTTCTGCCAAGTAGATTTTCAGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGCGCCGCCGCCCGTCGGTCGGTACTTTACGAATTTGATTGTGACGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAACCAATTGGAGAAATGTTTACCGAAAGTGGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACTTGACCCTGAAGCTGTGA
Coding sequence (CDS)
ATGCAAAATTCAATCGCCCTTTGTTTCTTCAGGCCCTCCTCCTCCACCGCCGCGGCCATGGCTGAATTTGGCCGAGGAACCGCCGCCGATCTCCACCATCTACGCCCTCTTCCAATTCCCGGCAGTCCGCTTGTCGCTTGCCGAATCTGCGACGCTGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCACGTGTCCGATGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAGCCAAACGCATCGGTTTCCGCCTGGTCCCCCGTTCTTAACGCCGCCACGAGCGTCGGCGCTGTTTCTGCCAAGTAGATTTTCAGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGCGCCGCCGCCCGTCGGTCGGTACTTTACGAATTTGATTGTGACGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAACCAATTGGAGAAATGTTTACCGAAAGTGGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACTTGACCCTGAAGCTGTGA
Protein sequence
MQNSIALCFFRPSSSTAAAMAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLWPNQLSPFARSLFREAPPPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL
Homology
BLAST of CmUC06G115080 vs. NCBI nr
Match:
KAG6574909.1 (hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 311.2 bits (796), Expect = 6.4e-81
Identity = 159/189 (84.13%), Postives = 167/189 (88.36%), Query Frame = 0
Query: 20 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 79
MAEFGR TAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGA+SAAAS
Sbjct: 1 MAEFGRATAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGASSAAAS 60
Query: 80 RRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSA-PNSLGFDAAESLWPNQLSPFARS 139
RRQ+QQRSQTHR PPG PPRA+A+FLPSR+S PNSLGFDAAESLWPNQLSPFARS
Sbjct: 61 RRQSQQRSQTHRLPPG-----PPRATAMFLPSRYSVPPNSLGFDAAESLWPNQLSPFARS 120
Query: 140 LFREA----PPPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKV-GDGGEEDDGRQLYF 199
LFRE PPPVG+Y TN EEA GDCTKPYINQLEKCLPKV G GGEEDDGRQLYF
Sbjct: 121 LFREGPPSYPPPVGQYLTNWNAAEEATGDCTKPYINQLEKCLPKVGGGGGEEDDGRQLYF 180
Query: 200 SKLDLTLKL 203
SKLDL+L+L
Sbjct: 181 SKLDLSLRL 184
BLAST of CmUC06G115080 vs. NCBI nr
Match:
KAA0050710.1 (hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 275.4 bits (703), Expect = 3.9e-70
Identity = 141/191 (73.82%), Postives = 157/191 (82.20%), Query Frame = 0
Query: 20 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 79
MA+F RGT ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS
Sbjct: 1 MADFARGTTADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS---R 60
Query: 80 RRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLWPN-QLSPFARS 139
R Q+QQ+ RFP GP FLTP RA+A+FLP+RFS+PNS+GF+ AES+W N Q+SPF RS
Sbjct: 61 RSQDQQQ---RRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWGNHQISPFGRS 120
Query: 140 LFREAPPP-------VGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQL 199
+FR+ PP VG+YFTNLI +E GDCTKPYINQLEKCLPKVG GGEEDD RQL
Sbjct: 121 VFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGKGGEEDDCRQL 180
Query: 200 YFSKLDLTLKL 203
Y SK+DLTLKL
Sbjct: 181 YLSKIDLTLKL 185
BLAST of CmUC06G115080 vs. NCBI nr
Match:
KAE8651808.1 (hypothetical protein Csa_006798 [Cucumis sativus])
HSP 1 Score: 270.4 bits (690), Expect = 1.3e-68
Identity = 140/191 (73.30%), Postives = 156/191 (81.68%), Query Frame = 0
Query: 20 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 79
MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS
Sbjct: 1 MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV 60
Query: 80 RRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLWPNQLSPFARSL 139
Q+QQR RFP GP FLT PRA+A+FLP+R+S+PN +GF+ AES+W NQ+SPF RS+
Sbjct: 61 --QDQQR----RFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSV 120
Query: 140 FREA-----PPP--VGRYFTNLIVTEE-AVGDCTKPYINQLEKCLPKVGDGGEEDDGRQL 199
FRE PPP +G+YFTNLI EE GDCTKPYINQLEKCLPKVG+GGEEDD RQL
Sbjct: 121 FREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVGNGGEEDDCRQL 180
Query: 200 YFSKLDLTLKL 203
Y SK+DLTLKL
Sbjct: 181 YLSKIDLTLKL 185
BLAST of CmUC06G115080 vs. NCBI nr
Match:
KAB8495643.1 (hypothetical protein FH972_025385 [Carpinus fangiana])
HSP 1 Score: 85.1 bits (209), Expect = 7.5e-13
Identity = 72/197 (36.55%), Postives = 97/197 (49.24%), Query Frame = 0
Query: 32 HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHR 91
H R P +ACR+CD VF S+QALINHI +H+++E +T+A+ SR Q R+ T R
Sbjct: 21 HIARQEPFQSPTQIACRLCDQVFMSTQALINHIESHMAEEESTAASRSR---QHRATTTR 80
Query: 92 FP---------PGPPFLTPPRASALFLPSRFSAPN----------SLGFDAAESLWPNQL 151
P P F T P + L L R S P+ S +L P Q+
Sbjct: 81 LPSQRDLLFNCSQPNFATHPE-NRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QV 140
Query: 152 SPFARSLFREAP-----PPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDD 203
SP AR AP P G+ ++ EE +GDCTKPY++QLE + V + +D
Sbjct: 141 SPMAR-FSSHAPQLILSSPQGQ--RRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRND 200
BLAST of CmUC06G115080 vs. NCBI nr
Match:
KAB1219262.1 (hypothetical protein CJ030_MR3G001255 [Morella rubra])
HSP 1 Score: 65.9 bits (159), Expect = 4.7e-07
Identity = 71/212 (33.49%), Postives = 93/212 (43.87%), Query Frame = 0
Query: 20 MAEFGRGTA-ADLHHLRP-LPIPGSPL-VACRICDAVFSSSQALINHIGAHVSDE----- 79
MAE+G + ++H L P P SP +ACR+CD VF S+QALINHI +H+ +E
Sbjct: 1 MAEYGWNMSHRNMHGLNPGGQRPYSPTRIACRLCDHVFLSTQALINHIESHMREEESARR 60
Query: 80 -----GATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNS----LGFD 139
G S N + P P +T P P+ A + LG D
Sbjct: 61 QHRTCGLPSTRDPFVMNSFLPANYIALPAPTGVTLPILENRLPPAGPVASSERHVLLGVD 120
Query: 140 ---AAESLWPNQLSPFARSLFREAPPPVGRYFTNLIV------TEEAVGDCTKPYINQLE 199
A+ P Q P AR+ F AP LIV E+ DCTKPY+NQL+
Sbjct: 121 RIVASRPTLPPQSPPMARNNFSLAP--------RLIVPASPRQAEQPPKDCTKPYLNQLD 180
Query: 200 KCLPKVGD--GGEEDDGRQLYFS-KLDLTLKL 203
+ V D G +D + LDL LKL
Sbjct: 181 HPIMAVVDITGSSDDHNTKSSLDINLDLALKL 204
BLAST of CmUC06G115080 vs. ExPASy TrEMBL
Match:
A0A5A7U6B7 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00040 PE=4 SV=1)
HSP 1 Score: 275.4 bits (703), Expect = 1.9e-70
Identity = 141/191 (73.82%), Postives = 157/191 (82.20%), Query Frame = 0
Query: 20 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 79
MA+F RGT ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS
Sbjct: 1 MADFARGTTADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS---R 60
Query: 80 RRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLWPN-QLSPFARS 139
R Q+QQ+ RFP GP FLTP RA+A+FLP+RFS+PNS+GF+ AES+W N Q+SPF RS
Sbjct: 61 RSQDQQQ---RRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWGNHQISPFGRS 120
Query: 140 LFREAPPP-------VGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQL 199
+FR+ PP VG+YFTNLI +E GDCTKPYINQLEKCLPKVG GGEEDD RQL
Sbjct: 121 VFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGKGGEEDDCRQL 180
Query: 200 YFSKLDLTLKL 203
Y SK+DLTLKL
Sbjct: 181 YLSKIDLTLKL 185
BLAST of CmUC06G115080 vs. ExPASy TrEMBL
Match:
A0A0A0LNN3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 PE=4 SV=1)
HSP 1 Score: 234.2 bits (596), Expect = 4.8e-58
Identity = 123/173 (71.10%), Postives = 137/173 (79.19%), Query Frame = 0
Query: 20 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 79
MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS
Sbjct: 1 MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV 60
Query: 80 RRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLWPNQLSPFARSL 139
Q+QQR RFP GP FLT PRA+A+FLP+R+S+PN +GF+ AES+W NQ+SPF RS+
Sbjct: 61 --QDQQR----RFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSV 120
Query: 140 FREA-----PPP--VGRYFTNLIVTEE-AVGDCTKPYINQLEKCLPKVGDGGE 185
FRE PPP +G+YFTNLI EE GDCTKPYINQLEKCLPKV G E
Sbjct: 121 FREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTE 167
BLAST of CmUC06G115080 vs. ExPASy TrEMBL
Match:
A0A5N6L1V8 (C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_025385 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 3.6e-13
Identity = 72/197 (36.55%), Postives = 97/197 (49.24%), Query Frame = 0
Query: 32 HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHR 91
H R P +ACR+CD VF S+QALINHI +H+++E +T+A+ SR Q R+ T R
Sbjct: 21 HIARQEPFQSPTQIACRLCDQVFMSTQALINHIESHMAEEESTAASRSR---QHRATTTR 80
Query: 92 FP---------PGPPFLTPPRASALFLPSRFSAPN----------SLGFDAAESLWPNQL 151
P P F T P + L L R S P+ S +L P Q+
Sbjct: 81 LPSQRDLLFNCSQPNFATHPE-NRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QV 140
Query: 152 SPFARSLFREAP-----PPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDD 203
SP AR AP P G+ ++ EE +GDCTKPY++QLE + V + +D
Sbjct: 141 SPMAR-FSSHAPQLILSSPQGQ--RRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRND 200
BLAST of CmUC06G115080 vs. ExPASy TrEMBL
Match:
A0A2N9E7H8 (C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 5.8e-11
Identity = 60/180 (33.33%), Postives = 83/180 (46.11%), Query Frame = 0
Query: 45 VACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQ-----NQQRSQTHRFPPGPPFL 104
+ACR+CD VF S+QALINHI +H+ +E ATS R +Q+ + F P
Sbjct: 26 IACRLCDNVFMSTQALINHIESHMGEEEATSRMQHRTNRLPIPSQRDICANPFQPNFALP 85
Query: 105 TPPRASALFLPSRFSAPNSLGFDAAESLW------------PNQLSPFARSLFREAPPP- 164
PPR + +R L + P +SP AR+ F A PP
Sbjct: 86 IPPRETQQLFENRLPVMQPLAPPERHPFYGLNRMIVPRPTLPPLVSPMARNNF--AVPPQ 145
Query: 165 --VGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLY--FSKLDLTLKL 203
+ + EE GDCTKPY+NQL+ + K+ D + +D +KLDL LKL
Sbjct: 146 FILSAEQAQRRMVEEPSGDCTKPYLNQLDHPIMKLVDVTDSNDDNNSISGLNKLDLALKL 203
BLAST of CmUC06G115080 vs. ExPASy TrEMBL
Match:
A0A6A1W232 (C2H2-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR3G001255 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 2.3e-07
Identity = 71/212 (33.49%), Postives = 93/212 (43.87%), Query Frame = 0
Query: 20 MAEFGRGTA-ADLHHLRP-LPIPGSPL-VACRICDAVFSSSQALINHIGAHVSDE----- 79
MAE+G + ++H L P P SP +ACR+CD VF S+QALINHI +H+ +E
Sbjct: 1 MAEYGWNMSHRNMHGLNPGGQRPYSPTRIACRLCDHVFLSTQALINHIESHMREEESARR 60
Query: 80 -----GATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNS----LGFD 139
G S N + P P +T P P+ A + LG D
Sbjct: 61 QHRTCGLPSTRDPFVMNSFLPANYIALPAPTGVTLPILENRLPPAGPVASSERHVLLGVD 120
Query: 140 ---AAESLWPNQLSPFARSLFREAPPPVGRYFTNLIV------TEEAVGDCTKPYINQLE 199
A+ P Q P AR+ F AP LIV E+ DCTKPY+NQL+
Sbjct: 121 RIVASRPTLPPQSPPMARNNFSLAP--------RLIVPASPRQAEQPPKDCTKPYLNQLD 180
Query: 200 KCLPKVGD--GGEEDDGRQLYFS-KLDLTLKL 203
+ V D G +D + LDL LKL
Sbjct: 181 HPIMAVVDITGSSDDHNTKSSLDINLDLALKL 204
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6574909.1 | 6.4e-81 | 84.13 | hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAA0050710.1 | 3.9e-70 | 73.82 | hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa] | [more] |
| KAE8651808.1 | 1.3e-68 | 73.30 | hypothetical protein Csa_006798 [Cucumis sativus] | [more] |
| KAB8495643.1 | 7.5e-13 | 36.55 | hypothetical protein FH972_025385 [Carpinus fangiana] | [more] |
| KAB1219262.1 | 4.7e-07 | 33.49 | hypothetical protein CJ030_MR3G001255 [Morella rubra] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U6B7 | 1.9e-70 | 73.82 | C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
| A0A0A0LNN3 | 4.8e-58 | 71.10 | C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 P... | [more] |
| A0A5N6L1V8 | 3.6e-13 | 36.55 | C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0253... | [more] |
| A0A2N9E7H8 | 5.8e-11 | 33.33 | C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799... | [more] |
| A0A6A1W232 | 2.3e-07 | 33.49 | C2H2-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR3G0012... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
