CmUC06G113100 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G113100
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	40S ribosomal protein S21
Location	CmU531Chr06: 5608167 .. 5610549 (+)
RNA-Seq Expression	CmUC06G113100
Synteny	CmUC06G113100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTAGGGTTTTTCCCAACCCTAATTCTCATTCTTCCCCTCCGGCCGACTGGTATCAACTCTTCTCTCAGTTCATCTGGATTTTCCTTAGGGTTCTTTTGCTACTCTTACTTTCTTGTATTTCAGATCTGAATGCTATACGGCGTCTCTATCATTTTTTCTTTTTTTTCTTCGCTACATTGATTCTGTGATTGAGTTATTGCATTCGTTTCTGACTACTTCCGATTCCTCGAATATTTTTTTTCTTTCATATATGGATTAGAACTCAAATTTCTCAGCCTTAATCCATCGTTTTTTTATTTTTTATTTTTTATTACTGTAGCAGGTTGTTATTTAGGTATTTAACGAAACATCGTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGGTACGTAATCAGCACATTTTGTTTGTTATTTTACACTATTTTCATTTTTGTGTCCAACCCTTTTCTGAATTTGTTTGTGGCATCTGATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCGGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGTGGTTTCATCCGTGCTCAGGTTCGATTTCATGATAATTTCTGTTAATGTTTTCTGTGTGTTATGTGATTTGGTTATTCAGTGGCTGCTTCACTTGCATCATAGCATTTTCTTATTTGAATTGATTTCTGTACGTTGATGACTTGATCTATTCTGTTGAATCGCTAGGATATTATTGTGTATATCTATATTTTGATTTCAGGTACCAACTGAAATATTGTTAATAATTTCATGTGTTTTTCTTAAACGTAATTTTCATACGTGGAATGCAACGCTTTTGTGCTTTATTCTTTGATCATTTACATTTGTAGGGAGTTTTTTTTCTTACTATCTTTATTATGTAGTTAGCCATTTTATCTGAGGGCACACAAATCAGTATAGTTTTTCAGCTTCCCTGAAATGACTATAGTTTTTAACAGATATGAAATCGTTTAACCTTACTTGGTTATTCAGTAGGGTTCGATTCTCATGTTTTGTTTGCAACCTTACTTGAACATGATTTATTCTATAGGTTGTACAACTGTGTCCACTCTAATATGTTGATTTAACATGTACTTATCTGTATATAAAGAAGCAGGCAAACTAGTTTCATCAATTTCTCAAAGTAATATTGCTTTGTGTATTATTTTTCATATGGAAATATATGAAGATTATTTTATACATCTGAAATCGTTGGTTTCCAACATAATAACTCCCTATTCAAAAAATCAGATGAACCTGAAAAACCGATTAACCCGACCTAGGGTTGGGTTCAAATAAATGAAAATTTTATGGGTTGGGTTGGTTCATTGGTTCACTTAAAACAACTCAAACCAACTTGAACTTATTAATTTTAAAAAATATATATATATTTTTACTTATGATACAATTATATATACATATATTTATTTTAGTTTGATTTAATTTCATTATTTTTTAGATAATTTATTCTCCAACAACTCCTAAAAATAGAAATTATCGTGAAATTTATTTTAATGAAGTTGGTTTTTTATATATAGTGGCCCTTGTTTTTGAATTTTATGGAGGGGAAAAATTTTGCTTTGATAAGTTTTTGACATACAGAACTAGTTATCAATTTAGTGTGTGGCATTAGGGTTTCCTGTTCACGAGTTGTATTTGAAGTTGGTGGTTATGTTCTATTTTAGTTACTGTCACAAAATTCTGAAGAACTCTTGACAAGAAAAGCCCATGACAAAGCACAACTTAACAAGAATAAAACAGTGTCTTAGCCCATGTGCATATAAAACATATATTGGGTATGATTTTAATATGTAGAAGGAAATTAATGTGTTGGTGTGATGTTATATTCGACAGGGAGACGCGGACAGTGCTTTGGATAGGTTGTGGCAGAAGAAAAAAGCAGAAGTTCGCCAACAGTAGAAAGTGGAAATTTTCTTCTACTTGAAATTTTATGTTTCTAATTAAGTTTAGTTTTATTGCGAATTATGAATGTTGAGAGAGCCTAGCCTGCCTTTGCTTCTAAAGTTGTAGTGTTTGTTGGAATCTTCATTCGGTGAAGCTGGTTTTTGATCATTTATTAGTGGATTTATTCACATTTCCGTGTTTCATTTAATATCATTTTCATTTTCTAGCACCTTCCTCCTTTTTTTGGGTTTGGGATTTCAAGTTTTACCCTCAAATGAAACGACGACTGTGTTGGTTAAATTTAATATTTTCAAATACCTTTTATATTTTTATCTTTTTGTTTCTTAAGATTTTAGTTCATACTTGTGTAATTGTATCAATTAATTATTAGTTTAGAG

mRNA sequence

ATGGGTTGTTATTTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGGTACGTAATCAGCACATTTTGTTTGTTATTTTACACTATTTTCATTTTTGTGTCCAACCCTTTTCTGAATTTGTTTGTGGCATCTGATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCGGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGTGGTTTCATCCGTGCTCAGGGAGACGCGGACAGTGCTTTGGATAGGTTGTGGCAGAAGAAAAAAGCAGAAGTTCGCCAACAGTAGAAAGTGGAAATTTTCTTCTACTTGAAATTTTATGTTTCTAATTAAGTTTAGTTTTATTGCGAATTATGAATGTTGAGAGAGCCTAGCCTGCCTTTGCTTCTAAAGTTGTAGTGTTTGTTGGAATCTTCATTCGGTGAAGCTGGTTTTTGATCATTTATTAGTGGATTTATTCACATTTCCGTGTTTCATTTAATATCATTTTCATTTTCTAGCACCTTCCTCCTTTTTTTGGGTTTGGGATTTCAAGTTTTACCCTCAAATGAAACGACGACTGTGTTGGTTAAATTTAATATTTTCAAATACCTTTTATATTTTTATCTTTTTGTTTCTTAAGATTTTAGTTCATACTTGTGTAATTGTATCAATTAATTATTAGTTTAGAG

Coding sequence (CDS)

ATGGGTTGTTATTTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGGTACGTAATCAGCACATTTTGTTTGTTATTTTACACTATTTTCATTTTTGTGTCCAACCCTTTTCTGAATTTGTTTGTGGCATCTGATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCGGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGTGGTTTCATCCGTGCTCAGGGAGACGCGGACAGTGCTTTGGATAGGTTGTGGCAGAAGAAAAAAGCAGAAGTTCGCCAACAGTAG

Protein sequence

MGCYLAKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Homology

[Close]

BLAST of CmUC06G113100 vs. NCBI nr
Match: XP_004143089.1 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal protein S21-2-like [Benincasa hispida] >KGN47181.1 hypothetical protein Csa_021003 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 81/113 (71.68%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 82

[Close]

BLAST of CmUC06G113100 vs. NCBI nr
Match: XP_022138832.1 (40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138834.1 40S ribosomal protein S21-2-like [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-32
Identity = 80/113 (70.80%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Sbjct: 61  ASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 82

[Close]

BLAST of CmUC06G113100 vs. NCBI nr
Match: XP_004134210.2 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_016898984.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_038879937.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906504.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906506.1 40S ribosomal protein S21-2 [Benincasa hispida] >KAA0049493.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa] >KGN57104.1 hypothetical protein Csa_010287 [Cucumis sativus] >TYK16172.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 80/113 (70.80%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CmUC06G113100 vs. NCBI nr
Match: XP_022959408.1 (40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata] >XP_022959409.1 40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 147.9 bits (372), Expect = 5.6e-32
Identity = 78/115 (67.83%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 6   AKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSK 65
           A MQNEEGKITELYIPRK                                SATNRLITSK
Sbjct: 27  ANMQNEEGKITELYIPRK-------------------------------CSATNRLITSK 86

Query: 66  DHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           DHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSA+DRLWQKKK EVRQQ
Sbjct: 87  DHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ 110

[Close]

BLAST of CmUC06G113100 vs. NCBI nr
Match: KAG6575063.1 (40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.9 bits (372), Expect = 5.6e-32
Identity = 78/115 (67.83%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 6   AKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSK 65
           A MQNEEGKITELYIPRK                                SATNRLITSK
Sbjct: 32  ANMQNEEGKITELYIPRK-------------------------------CSATNRLITSK 91

Query: 66  DHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           DHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSA+DRLWQKKK EVRQQ
Sbjct: 92  DHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ 115

[Close]

BLAST of CmUC06G113100 vs. ExPASy Swiss-Prot
Match: Q3E902 (40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 8.4e-31
Identity = 68/112 (60.71%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEG++TELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGQVTELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ 120
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQ 81

[Close]

BLAST of CmUC06G113100 vs. ExPASy Swiss-Prot
Match: Q9M337 (40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 65/113 (57.52%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           M+N+ G++TELYIPRK                                SATNR+ITSKDH
Sbjct: 1   MENDAGQVTELYIPRK-------------------------------CSATNRMITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82

[Close]

BLAST of CmUC06G113100 vs. ExPASy Swiss-Prot
Match: P35687 (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-29
Identity = 66/113 (58.41%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEG++ +LY+PRK                                SATNR+IT+KDH
Sbjct: 1   MQNEEGQMVDLYVPRK-------------------------------CSATNRIITAKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+KAEV+QQ
Sbjct: 61  ASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVKQQ 82

[Close]

BLAST of CmUC06G113100 vs. ExPASy Swiss-Prot
Match: Q41852 (40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-28
Identity = 64/112 (57.14%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGK  +LY+PRK                                SATNR+IT+KDH
Sbjct: 1   MQNEEGKTVDLYVPRK-------------------------------CSATNRIITAKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ 120
           ASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKKAE++Q
Sbjct: 61  ASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKAEIKQ 81

[Close]

BLAST of CmUC06G113100 vs. ExPASy Swiss-Prot
Match: Q9SMI2 (40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-19
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQN+EGKI +LYIPRK                                SATNRLI++ DH
Sbjct: 1   MQNDEGKIVDLYIPRK-------------------------------CSATNRLISATDH 60

Query: 68  ASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK 113
           A+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Sbjct: 61  AAVQINVGHVDPNSGLYTGDYTTFALCGFVRSMGESDAALNRLCVK 75

[Close]

BLAST of CmUC06G113100 vs. ExPASy TrEMBL
Match: A0A0A0KHD3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.5e-33
Identity = 81/113 (71.68%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 82

[Close]

BLAST of CmUC06G113100 vs. ExPASy TrEMBL
Match: A0A6J1CCB6 (40S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009905 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 80/113 (70.80%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Sbjct: 61  ASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 82

[Close]

BLAST of CmUC06G113100 vs. ExPASy TrEMBL
Match: A0A1S4DSM1 (40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 80/113 (70.80%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CmUC06G113100 vs. ExPASy TrEMBL
Match: A0A5D3CXC9 (40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001000 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 80/113 (70.80%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CmUC06G113100 vs. ExPASy TrEMBL
Match: A0A0A0L7W3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 80/113 (70.80%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CmUC06G113100 vs. TAIR 10
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 134.4 bits (337), Expect = 6.0e-32
Identity = 68/112 (60.71%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEG++TELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGQVTELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ 120
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQ 81

[Close]

BLAST of CmUC06G113100 vs. TAIR 10
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 130.6 bits (327), Expect = 8.6e-31
Identity = 65/113 (57.52%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           M+N+ G++TELYIPRK                                SATNR+ITSKDH
Sbjct: 1   MENDAGQVTELYIPRK-------------------------------CSATNRMITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82

[Close]

BLAST of CmUC06G113100 vs. TAIR 10
Match: AT3G53890.2 (Ribosomal protein S21e )

HSP 1 Score: 130.6 bits (327), Expect = 8.6e-31
Identity = 65/113 (57.52%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           M+N+ G++TELYIPRK                                SATNR+ITSKDH
Sbjct: 1   MENDAGQVTELYIPRK-------------------------------CSATNRMITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82

The following BLAST results are available for this feature:

BLAST of CmUC06G113100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143089.1	1.1e-32	71.68	40S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal prot...	[more]
XP_022138832.1	2.5e-32	70.80	40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribos...	[more]
XP_004134210.2	3.3e-32	70.80	40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S rib...	[more]
XP_022959408.1	5.6e-32	67.83	40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata] >XP_022959409.1 40S ...	[more]
KAG6575063.1	5.6e-32	67.83	40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmUC06G113100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E902	8.4e-31	60.71	40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2	[more]
Q9M337	1.2e-29	57.52	40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1	[more]
P35687	3.5e-29	58.41	40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3...	[more]
Q41852	3.0e-28	57.14	40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1	[more]
Q9SMI2	3.3e-19	47.17	40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1	[more]

BLAST of CmUC06G113100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHD3	5.5e-33	71.68	40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1	[more]
A0A6J1CCB6	1.2e-32	70.80	40S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009905 PE=3 SV...	[more]
A0A1S4DSM1	1.6e-32	70.80	40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1	[more]
A0A5D3CXC9	1.6e-32	70.80	40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0L7W3	1.6e-32	70.80	40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1	[more]

BLAST of CmUC06G113100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27700.1	6.0e-32	60.71	Ribosomal protein S21e	[more]
AT3G53890.1	8.6e-31	57.52	Ribosomal protein S21e	[more]
AT3G53890.2	8.6e-31	57.52	Ribosomal protein S21e	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038579	Ribosomal protein S21e superfamily	GENE3D	3.30.1230.20		coord: 42..119 e-value: 4.3E-30 score: 105.5
IPR001931	Ribosomal protein S21e	PIRSF	PIRSF002148	RPS21e	coord: 8..30 e-value: 0.0034 score: 15.5 coord: 45..120 e-value: 3.9E-26 score: 89.0
IPR001931	Ribosomal protein S21e	PFAM	PF01249	Ribosomal_S21e	coord: 56..114 e-value: 1.0E-26 score: 92.8
IPR001931	Ribosomal protein S21e	PANTHER	PTHR10442	40S RIBOSOMAL PROTEIN S21	coord: 55..120
None	No IPR available	PANTHER	PTHR10442:SF13	40S RIBOSOMAL PROTEIN S21	coord: 55..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G113100.1	CmUC06G113100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome