CmUC06G112390 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G112390
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr06: 4813646 .. 4814928 (+)
RNA-Seq Expression	CmUC06G112390
Synteny	CmUC06G112390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTCGTTGATAATGGGGACGGGAAGAGAGCTTTAACCGGCATACGGAATTCTCACGCCGTGTTTTCAACGCACAAATTGGAAATTCCGACTAATTTCACCCAAACAGCCTCCGATTCTTCAACCCCATTTTGCTGCCGCCGCCGTGGACTTTGGATTAGGGGCCATCTTCTCCGCCGTCCCGCCCCAACTCTTTCCCTATCGCCGTACTCTTCTCCGGCCGCCGTTGCAGAACCTAACTCCTCTTCCGCCGCTTCAACTTCCTCCCTATTAACTCCACAGTTTGTGAAGATCTAGACTCGAATTTTCGCTTTTCATGCTCTTATTGACTCCTGGTTATTAGGGTTTTCTTTCGCCTGGGCCGCTCTTTTCTCACTTCCATTGGCGTACTTGTGCTGAAATTTGAGGTTTCCTTATTTCATTTCTGTATCTTTTGTTGGCATTTGAGGTTCTTCTGCTTTTTCCTTCTTTTCCCATTCATTGGATTCTTCTGCTTAACATCGTAAATAACGATTCTCTCTGTTGTTTTGTAATTTGCTTCCTTCTCAACTTTTACCTAGTCCTTTTGGGACATGCAATACGGATAAATCAGAAAAGAAAAAGATAACGTGCTTCCCTGGCTATATATTGATTCGGGAAAATGTGATTTCATGAATTGCTATATGCAATATTTGTATAGTTGGTCGGTGGGGAATGTATGTGAAATAAGCTTTGTTATTGATCTTTGTCACTCGTATTCATCGGTCTACTACATTAGTACTGGAAATGAGGTTTTTCCCTAAATATGGATTATGGACATTATCATCGATCAGTTTGTGTTATTTTCGTATTAGTTGACTCTTTATTTGATTTTCTATACTATTTTTTGCTGTTGGATGACTCTACTTCATTGAGAATGCTCTTCGCCACAGCTGCACTCTGCAAAATGGGTACTCCTGTCTGTGGTTCTGTGTGGTTCATGGTATAATGCATGCTAAACGATCAAAGGATGTGTAATTTTTTCTCACAAGAAGAAATACAACAAGTGTAGGTCAATTACACAATTGGTCATAAAATCTAAAGAAGTACAAATATAGAATATAGTTGTAGTCATGCAATATAAAAGCACACACCAACTTTAACCTTGACCGGCAGAAATTAAAAGGGAAAAGGGTGTGACCGTTAGGTGCACCTTTGTGAAACCTCATCATCAAAATGTGCAAGTTTTGCCTCTAACAACACTGGTTATGAATGTTTACACAATTGTTTTCCCTGTATTAGAAAGTTTTTCTGTCTGCTGA

mRNA sequence

ATGCTTGTCGTTGATAATGGGGACGGGAAGAGAGCTTTAACCGGCATACGGAATTCTCACGCCGTGTTTTCAACGCACAAATTGGAAATTCCGACTAATTTCACCCAAACAGCCTCCGATTCTTCAACCCCATTTTGCTGCCGCCGCCGTGGACTTTGGATTAGGGGCCATCTTCTCCGCCGTCCCGCCCCAACTCTTTCCCTATCGCCGTACTCTTCTCCGGCCGCCGTTGCAGAACCTAACTCCTCTTCCGCCGCTTCAACTTCCTCCCTATTAACTCCACAGGTTTTCTTTCGCCTGGGCCGCTCTTTTCTCACTTCCATTGGCGTACTTGTGCTGAAATTTGAGGTTTCCTTATTTCATTTCTGTATCTTTTGTTGGCATTTGAGTTGGTCGGTGGGGAATGTATGTGAAATAAGCTTTGTTATTGATCTTTGTCACTCGTATTCATCGGTCTACTACATTAGTACTGGAAATGAGAATGCTCTTCGCCACAGCTGCACTCTGCAAAATGGGTACTCCTGTCTGTGGTTCTGTGTGGTTCATGAAATTAAAAGGGAAAAGGGTGTGACCGTTAGGTGCACCTTTGTGAAACCTCATCATCAAAATGTGCAAGTTTTGCCTCTAACAACACTGGTTATGAATGTTTACACAATTGTTTTCCCTGTATTAGAAAGTTTTTCTGTCTGCTGA

Coding sequence (CDS)

ATGCTTGTCGTTGATAATGGGGACGGGAAGAGAGCTTTAACCGGCATACGGAATTCTCACGCCGTGTTTTCAACGCACAAATTGGAAATTCCGACTAATTTCACCCAAACAGCCTCCGATTCTTCAACCCCATTTTGCTGCCGCCGCCGTGGACTTTGGATTAGGGGCCATCTTCTCCGCCGTCCCGCCCCAACTCTTTCCCTATCGCCGTACTCTTCTCCGGCCGCCGTTGCAGAACCTAACTCCTCTTCCGCCGCTTCAACTTCCTCCCTATTAACTCCACAGGTTTTCTTTCGCCTGGGCCGCTCTTTTCTCACTTCCATTGGCGTACTTGTGCTGAAATTTGAGGTTTCCTTATTTCATTTCTGTATCTTTTGTTGGCATTTGAGTTGGTCGGTGGGGAATGTATGTGAAATAAGCTTTGTTATTGATCTTTGTCACTCGTATTCATCGGTCTACTACATTAGTACTGGAAATGAGAATGCTCTTCGCCACAGCTGCACTCTGCAAAATGGGTACTCCTGTCTGTGGTTCTGTGTGGTTCATGAAATTAAAAGGGAAAAGGGTGTGACCGTTAGGTGCACCTTTGTGAAACCTCATCATCAAAATGTGCAAGTTTTGCCTCTAACAACACTGGTTATGAATGTTTACACAATTGTTTTCCCTGTATTAGAAAGTTTTTCTGTCTGCTGA

Protein sequence

MLVVDNGDGKRALTGIRNSHAVFSTHKLEIPTNFTQTASDSSTPFCCRRRGLWIRGHLLRRPAPTLSLSPYSSPAAVAEPNSSSAASTSSLLTPQVFFRLGRSFLTSIGVLVLKFEVSLFHFCIFCWHLSWSVGNVCEISFVIDLCHSYSSVYYISTGNENALRHSCTLQNGYSCLWFCVVHEIKREKGVTVRCTFVKPHHQNVQVLPLTTLVMNVYTIVFPVLESFSVC

Homology

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BLAST of CmUC06G112390 vs. NCBI nr
Match: KAE8637117.1 (hypothetical protein CSA_004594 [Cucumis sativus] >KAE8647145.1 hypothetical protein Csa_021772 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-12
Identity = 58/121 (47.93%), Postives = 69/121 (57.02%), Query Frame = 0


Query: 3   VVDNGDGKRALTGIRNSHAVFSTHKLEIPTNFTQTASDSSTPFCCRRRGLWIRGHLLRRP 62
           VVDNGDG+ ALTGIR+SH VFSTH+L+    F      +STP   R    WI+ HL   P
Sbjct: 22  VVDNGDGEIALTGIRDSHPVFSTHRLK----FRLPQIITSTPQRRRLLRHWIQVHLPALP 81

Query: 63  APTLSLSPYSSPAAVAEPNSSSAASTSSLLTPQVFFRLGRSFLTSIGVLVLKFEVSLFHF 122
            PTLSLSPYSS                     +VFFRL  +FLTSIGVL+LK E ++   
Sbjct: 82  -PTLSLSPYSS--------------------SRVFFRLASTFLTSIGVLLLKLEATILLG 117

Query: 123 C 124
           C
Sbjct: 142 C 117

[Close]

BLAST of CmUC06G112390 vs. ExPASy TrEMBL
Match: A0A0A0KI41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324850 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 51/103 (49.51%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 3   VVDNGDGKRALTGIRNSHAVFSTHKLEI----------PTNFTQTASDSSTPFCCRRRGL 62
           VVDNGDG+ ALTGIR+SH VFSTH+L+           PT  + +  DSS P        
Sbjct: 22  VVDNGDGEIALTGIRDSHPVFSTHRLKFRLPQIITSTPPTPPSSSTLDSSPP-------- 81

Query: 63  WIRGHLLRRPAPTLSLSPY-SSPAAVAEPNSSSAASTSSLLTP 95
                      PTLSLSPY SSP  VA+PNSSS A+TS L TP
Sbjct: 82  ------SPPSPPTLSLSPYSSSPVLVAQPNSSSPATTSFLSTP 110

The following BLAST results are available for this feature:

BLAST of CmUC06G112390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637117.1	1.1e-12	47.93	hypothetical protein CSA_004594 [Cucumis sativus] >KAE8647145.1 hypothetical pro...	[more]

BLAST of CmUC06G112390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G112390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI41	2.8e-09	49.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324850 PE=4 SV=1	[more]

BLAST of CmUC06G112390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G112390.1	CmUC06G112390.1	mRNA