CmUC06G112350 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G112350
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	30S ribosomal protein S1, chloroplastic
Location	CmU531Chr06: 4743324 .. 4746669 (-)
RNA-Seq Expression	CmUC06G112350
Synteny	CmUC06G112350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAGATTTCCAGAACAATTCTCATTTATTGTTATCTGAACGAACACCTTCACAGCTTTACAAAATCACTTCATCTTTATTTTTTTGTAAAAGCGACTAGGAAATAATGGAATTGCGTGTTTTGTTCTTTTTGAAGGGTAATGCTTGCCATGTAGGAGGTTCTGGTTATTGAGCACATTCTTTTGTTGAATTTTGGGCATAGAACGAAAAAAGTAGTCCTACGTGAGTGGATTTGCGAAGAATTTTATTTCTGGAACATTTTCTTTCTTTTGGTGGTTGGGATAGTTGGAATTTGCAGCGGTTAGAATTTGAATTTGCATTGGTATTGCTTCATCAAGTAAACTCACAATGTAGCATCGTGAGTTTGAGAAACAGAAAACTATTCAATCAAAGAAAGAACAGCCTAGGGGCAGAGAGGCGAGAAGCCCCTCCCCTTAAAGAACTAGCGTATCAGAGCCTTCCAATTATGGAGGATTTGAGTAAGACTGTAATTACAAAAAAGATCCTTTTCCGCAAGAGTCCATAAAGAAATAATTTGTTCAATATTGGAAAAATCAACAAAAGGGCAAGACTTATCTTCAAAGCTTGAGAGGGGATGTTAGATCATATTATTCAAATTCGATTTAGTTTAAATTTGCAATTTGAATTAGGTTTGTTTAGTATGTGAATTGTGTTATTAGATTTATTTTTTAGAACCATAAATAGGTTTTTAGCGTTGTATTTCATAATGCACTCTTTATTCAATGGAACTCTAGCTGTCGTTTGTGTTATCTTCCTCTTTTCTCTTCCCTAAATTTAGAAGTAATAATATCTAGATACATCAAATGCCACGAATGGTTCCCAATCTCAAGAAACATTGGGCCTTACGCGTATGAAGTTCGAGGTTTTCAATAGTTCCACCAAGCACGAGCTGACTACAGAAAGAATTGAGCTACACGTTCCTGAAAATTTGTGACTTACAGCTGCAACTATTTAACTACCCAGAGTTTTTATAGCCACCCCAAAAGAACCAGCTTAACAGAAATCTGTGGCATTACTTTTTGGCTCCAATATCAGATAGCTAACAGAAATCTGTGCCATTTCTTTCTTTAATATTTGCACATGCATCTCGTGGGCTAATGGATAGTGGTTAACTTCTCAATAAGTTCAAATTATTGTTTTCTCAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTGGGTTCTGCAAGATATATCATGCTTTTATAATTTTGTTTGTTCCTTATATCGTTGCGCAAGATCCTTCAATCTTGTTATGCTAGTAGTATTCATGTGACCATTGCCTTTCATCCTTTTGTTGCCTTCTTAGCTTCATAACCTAGTTGCAGGGCAGAGGCACTCCCACATTATTGTTTTATCATCTTTTTTACTCATTACAAATGTGTTTTTATTTAATATTGATCATCTTTGTCATTCACTGAATAATTTAAGATTTCACACTTGTTTTTACCTGTTGCTACTTTTACTATCTCATTTTTATTTTCCTTTTCTAAGAGAAAGATCTTGAAATGCAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAGTTAGTTCACTTGACTGACATTCTTTTTGCTGACTTTTGATGCTCTAGCTGACTTAACTTTTAAAACTTCTATTATTATTTACTTTGCGGTCATACTGATAGCCTACACATTTATATGTTTTTGTGATTATATGATTATCTTGACCATCACAGACCACTACTTTTGCTCATATTCTTCATCAGTTTTAAGCTCACATACTGTGCCATATATCTCTTTTTCTTGTCAATTTATCAGAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTATTTCATTGTCATTTGTCAATGAGAGCTTGAAGGAGGTCTTCATCATTGTGCAGCCTTGAACATGTTGAAATTAATTTTTGAGGTTGCAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGTATTTCTTTTGCCCTTTACTCTTCTTACTATTATGACGTGCATTGCTTGTATTTTCAGAAGGTGTTTGCACTTTTCAATTCTTATTGTTAGTGTGCATATTAGGTTGCCTAGTCTTTTCCCCCCCTTATATTTAACCGCTAGCATGACTTGAACCTTTATGTAATATTGTGTAGGAGAGCTCCAAAATTTATGGTTTCACTTCCATCCATTCAATTTCACCTCATATAAATTATTGAACTAGAGTAGATTTTTAATTTTTTTTAATTTCTTGTATCTATTCTAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGGTACTTATTTATTTGGCTTGGATTTTTCAACTTAATTCATTGAAAATGTTGGAGCGTGATTAA

mRNA sequence

ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGGTACTTATTTATTTGGCTTGGATTTTTCAACTTAATTCATTGAAAATGTTGGAGCGTGATTAA

Coding sequence (CDS)

ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGGTACTTATTTATTTGGCTTGGATTTTTCAACTTAATTCATTGAAAATGTTGGAGCGTGATTAA

Protein sequence

MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQAETMARAGLLGFQLEVLIYLAWIFQLNSLKMLERD

Homology

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BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_038906593.1 (30S ribosomal protein S1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 679.9 bits (1753), Expect = 1.4e-191
Identity = 355/390 (91.03%), Postives = 368/390 (94.36%), Query Frame = 0


Query: 1   MSSSAHQP-CGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISN 60
           MSSSAHQP CGL SRYSY PLSS R SASSWNWNRF P +  K+LPLVSAAASSPSPISN
Sbjct: 1   MSSSAHQPCCGLKSRYSYSPLSSWRLSASSWNWNRFPPKEWRKLLPLVSAAASSPSPISN 60

Query: 61  AQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTD 120
           AQTK RLKLKQLFKEAYERCCT+PMDG+SFTLEDFHAALA+YDFV+ELGTKVKGTVFCT+
Sbjct: 61  AQTKERLKLKQLFKEAYERCCTSPMDGVSFTLEDFHAALADYDFVSELGTKVKGTVFCTN 120

Query: 121 ANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRS 180
           ANGALVD T KGTAYLPTQEACILKI+HVEE GIYPGLEEEF+IIAEQEDGDGLILSLRS
Sbjct: 121 ANGALVD-TVKGTAYLPTQEACILKIKHVEEAGIYPGLEEEFIIIAEQEDGDGLILSLRS 180

Query: 181 VQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNK 240
           VQYGLAWERCRQLQAEDIVIKGKVVGATKGG+VVLVEGLRGFVPFSQISAKST EELLNK
Sbjct: 181 VQYGLAWERCRQLQAEDIVIKGKVVGATKGGVVVLVEGLRGFVPFSQISAKSTAEELLNK 240

Query: 241 ELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLL 300
           ELRLKFVEVDE+LSRL+LSNSKAIV SQAELRIGSVVTGTVQ LKPYGAFIDIGGINGLL
Sbjct: 241 ELRLKFVEVDEELSRLILSNSKAIV-SQAELRIGSVVTGTVQILKPYGAFIDIGGINGLL 300

Query: 301 HVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFE 360
           HVSQISQNHI DIATVLQPGD+LKVMILSYD NKGRVSLSTKKLEPTPGDMIHNPKLVFE
Sbjct: 301 HVSQISQNHILDIATVLQPGDVLKVMILSYDQNKGRVSLSTKKLEPTPGDMIHNPKLVFE 360

Query: 361 KADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           KADEMAQ FRQRIAQAE MARAGLLG Q E
Sbjct: 361 KADEMAQTFRQRIAQAEAMARAGLLGCQPE 388

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BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_023006590.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 592.0 bits (1525), Expect = 3.8e-165
Identity = 318/394 (80.71%), Postives = 338/394 (85.79%), Query Frame = 0


Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHA+LANYDFV+E+GTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKLSRLVLSNSKAI SSQ+ELRIGSVVTG VQ LKPYGAFIDIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHISDIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLEVLI 393
           EKADEMAQ FRQRIAQAE MARA LL FQ E+L+
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPELLL 377

[Close]

BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_022958818.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 590.9 bits (1522), Expect = 8.5e-165
Identity = 317/394 (80.46%), Postives = 337/394 (85.53%), Query Frame = 0


Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHAALANYDFV+ELGTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKL RL+LSNSKAIVSSQ+ELRIGSVVTG VQ LKPYGAF+DIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHI DIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLEVLI 393
           EKADEMAQ FRQRIAQAE MARA LL FQ E+L+
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPELLL 377

[Close]

BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_023006591.1 (30S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 589.7 bits (1519), Expect = 1.9e-164
Identity = 317/391 (81.07%), Postives = 335/391 (85.68%), Query Frame = 0


Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHA+LANYDFV+E+GTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKLSRLVLSNSKAI SSQ+ELRIGSVVTG VQ LKPYGAFIDIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHISDIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           EKADEMAQ FRQRIAQAE MARA LL FQ E
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPE 374

[Close]

BLAST of CmUC06G112350 vs. NCBI nr
Match: XP_022138847.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 588.6 bits (1516), Expect = 4.2e-164
Identity = 309/383 (80.68%), Postives = 334/383 (87.21%), Query Frame = 0


Query: 11  LNSRYSYPPLSSSRFSASSWNWNRF----SPNQRPKVLPLVSAAASSPSPISNAQTKGRL 70
           +NS     PLSS R S SS +W RF    S N + + LP+VS+AAS+ +PISNAQTK RL
Sbjct: 1   MNSLAHRVPLSSLRLSVSSSSWRRFSRKESHNHKFRALPVVSSAAST-TPISNAQTKERL 60

Query: 71  KLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVD 130
           KLKQLFKEAYERCCT PMDG+SFTLEDFHAAL+NYDFV+ELGTKVKGTVF TDA+GALVD
Sbjct: 61  KLKQLFKEAYERCCTTPMDGVSFTLEDFHAALSNYDFVSELGTKVKGTVFSTDASGALVD 120

Query: 131 TTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAW 190
           TTAKGTAYLP +EACILKIRHVEE GIYPGLEEEFVIIAE E    LILSLR +QYGLAW
Sbjct: 121 TTAKGTAYLPIEEACILKIRHVEEAGIYPGLEEEFVIIAEHETDGSLILSLRRLQYGLAW 180

Query: 191 ERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFV 250
           ERCRQLQAED+VIKGKVVGA KGG+ VLVEGLRGFVPFSQISAKST EELL+KELRLKFV
Sbjct: 181 ERCRQLQAEDVVIKGKVVGANKGGVFVLVEGLRGFVPFSQISAKSTAEELLDKELRLKFV 240

Query: 251 EVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQ 310
           EVDE+LSRL+LSN KAI +SQAELRIGSVVTGTVQ LK YGAFIDIGG+NGLLH+SQIS 
Sbjct: 241 EVDEELSRLILSNCKAIANSQAELRIGSVVTGTVQILKSYGAFIDIGGVNGLLHISQISH 300

Query: 311 NHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQ 370
           NHISD+ATVL+PGD LKVMILSYD  +GRVSLSTK LEPTPGDMIHNPKLVFEKADEMAQ
Sbjct: 301 NHISDMATVLRPGDTLKVMILSYDHERGRVSLSTKNLEPTPGDMIHNPKLVFEKADEMAQ 360

Query: 371 IFRQRIAQAETMARAGLLGFQLE 390
            FRQRIAQAE MAR  LL  Q E
Sbjct: 361 TFRQRIAQAEAMARVDLLRLQPE 382

[Close]

BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 1.7e-144
Identity = 268/374 (71.66%), Postives = 307/374 (82.09%), Query Frame = 0


Query: 18  PPLSSSRFSASSWNWNRFSPNQ--RPKVLPLVSAAASSPSPISNAQTKGRLKLKQLFKEA 77
           PPLS+S  S        FSP    +P+  P+VSA A     +SNAQT+ R KLKQLF++A
Sbjct: 15  PPLSNSNLS------KPFSPKHTLKPRFSPIVSAVA-----VSNAQTRERQKLKQLFEDA 74

Query: 78  YERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYL 137
           YERC  APM+G+SFT++DFH AL  YDF +E+G++VKGTVFCTDANGALVD TAK +AYL
Sbjct: 75  YERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYL 134

Query: 138 PTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAE 197
           P  EACI +I++VEE GI PG+ EEFVII E E  D LILSLR +QY LAWERCRQLQAE
Sbjct: 135 PLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAE 194

Query: 198 DIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRL 257
           D+V+KGK+VGA KGG+V LVEGLRGFVPFSQIS+KS+ EELL KE+ LKFVEVDE+ SRL
Sbjct: 195 DVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRL 254

Query: 258 VLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATV 317
           V+SN KA+  SQA+L IGSVVTGTVQ LKPYGAFIDIGGINGLLHVSQIS + +SDIATV
Sbjct: 255 VMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATV 314

Query: 318 LQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQA 377
           LQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NPKLVFEKA+EMAQ FRQRIAQA
Sbjct: 315 LQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQA 374

Query: 378 ETMARAGLLGFQLE 390
           E MARA +L FQ E
Sbjct: 375 EAMARADMLRFQPE 377

[Close]

BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 1.7e-136
Identity = 258/389 (66.32%), Postives = 309/389 (79.43%), Query Frame = 0


Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           M+S A Q  GL      P  SSSR S  +     F  N+   V P + AA +    +S+ 
Sbjct: 1   MASLAQQFSGLRCS---PLSSSSRLSRRA--SKNFPQNKSASVSPTIVAAVA----MSSG 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RL+LK++F++AYERC T+PM+G++FT++DF AA+  YDF +E+GT+VKGTVF TDA
Sbjct: 61  QTKERLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSV 180
           NGALVD +AK +AYL  ++ACI +I+HVEE GI PG+ EEFVII E E  D L+LSLR++
Sbjct: 121 NGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNI 180

Query: 181 QYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKE 240
           QY LAWERCRQLQAED+++K KV+GA KGGLV LVEGLRGFVPFSQIS+K+  EELL KE
Sbjct: 181 QYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKE 240

Query: 241 LRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLH 300
           + LKFVEVDE+ ++LVLSN KA+  SQA+L IGSVV G VQ LKPYGAFIDIGGINGLLH
Sbjct: 241 IPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLH 300

Query: 301 VSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEK 360
           VSQIS + +SDIATVLQPGD LKVMILS+D ++GRVSLSTKKLEPTPGDMI NPKLVFEK
Sbjct: 301 VSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEK 360

Query: 361 ADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           A+EMAQ FRQRIAQAE MARA +L FQ E
Sbjct: 361 AEEMAQTFRQRIAQAEAMARADMLRFQPE 380

[Close]

BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 273.1 bits (697), Expect = 5.2e-72
Identity = 141/293 (48.12%), Postives = 196/293 (66.89%), Query Frame = 0


Query: 83  PMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACI 142
           P   I FT EDF A L  YD+    G  V GTVF  +  GAL+D  AK  A+LP QE  I
Sbjct: 7   PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66

Query: 143 LKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAEDIVIKGK 202
            ++   EEV + P    EF I++++ +   L LS+R ++Y  AWER RQLQ ED  ++ +
Sbjct: 67  NRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSE 126

Query: 203 VVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKA 262
           V    +GG +V +EGLRGF+P S IS +   E+L+ +EL LKF+EVDE  +RLVLS+ +A
Sbjct: 127 VFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 186

Query: 263 IVSSQA-ELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDM 322
           +V  +   L +G VV G V+ +KPYGAFIDIGG++GLLH+S+IS +HI    +V    D 
Sbjct: 187 LVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDE 246

Query: 323 LKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQ 375
           +KVMI+  D  +GR+SLSTK+LEP PGDM+ NP++V+EKA+EMA  +R+++ Q
Sbjct: 247 VKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298

[Close]

BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 5.7e-71
Identity = 144/292 (49.32%), Postives = 198/292 (67.81%), Query Frame = 0


Query: 87  ISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIR 146
           I FTLEDF A L  YD+    G  V GTVF  ++ GAL+D  AK  AY+P QE  I ++ 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 147 HVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAEDIVIKGKVVGA 206
             EEV + P    EF I+ ++ +   L LS+R ++Y  AWER RQLQAED  ++  V   
Sbjct: 70  DPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 129

Query: 207 TKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAIVSS 266
            +GG +V +EGLRGF+P S ISA+   E+L+ ++L LKF+EVDE+ +RLVLS+ +A+V  
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 189

Query: 267 QAE-LRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDMLKVM 326
           +   L +  VV G+V+ +KPYGAFIDIGG++GLLH+S+IS +HI    +V    D +KVM
Sbjct: 190 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 249

Query: 327 ILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQ-RIAQAE 377
           I+  D  +GR+SLSTK+LEP PG M+ +  LV E ADEMA+IFRQ R+A+A+
Sbjct: 250 IIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQ 300

[Close]

BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot
Match: P51345 (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps1 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.8e-40
Identity = 94/262 (35.88%), Postives = 153/262 (58.40%), Query Frame = 0


Query: 88  SFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIRH 147
           SFT  +F A L  Y +   LG  V GT+F  + NG LVD     +AYLP QE     +  
Sbjct: 7   SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQE-----VSS 66

Query: 148 VEEVGIYPGLE----EEFVIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAEDIVIKGKV 207
            +E+  +  L      EF ++    +   LILS+R ++Y  AW+R RQL AED ++  ++
Sbjct: 67  NQELNNFNSLNINDTREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRI 126

Query: 208 VGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAI 267
            G  KGG++V +EG+ GFVP S ++  S      NK ++LK + V+EK + L+LS+ +A+
Sbjct: 127 KGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRAL 186

Query: 268 VS-SQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDML 327
           ++ + + L +G+++ G +  + PYG FI  G + GL+H+S+I+   +  I +  + GD +
Sbjct: 187 IAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTI 246

Query: 328 KVMILSYDCNKGRVSLSTKKLE 345
           K +I+  D  +GR+SLS K L+
Sbjct: 247 KAVIIHVDKKQGRLSLSMKHLK 263

[Close]

BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1L0J3 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 1.9e-165
Identity = 318/394 (80.71%), Postives = 338/394 (85.79%), Query Frame = 0


Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHA+LANYDFV+E+GTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKLSRLVLSNSKAI SSQ+ELRIGSVVTG VQ LKPYGAFIDIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHISDIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLEVLI 393
           EKADEMAQ FRQRIAQAE MARA LL FQ E+L+
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPELLL 377

[Close]

BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1H453 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 4.1e-165
Identity = 317/394 (80.46%), Postives = 337/394 (85.53%), Query Frame = 0


Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHAALANYDFV+ELGTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKL RL+LSNSKAIVSSQ+ELRIGSVVTG VQ LKPYGAF+DIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHI DIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLEVLI 393
           EKADEMAQ FRQRIAQAE MARA LL FQ E+L+
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPELLL 377

[Close]

BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1KY62 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 9.2e-165
Identity = 317/391 (81.07%), Postives = 335/391 (85.68%), Query Frame = 0


Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHA+LANYDFV+E+GTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKLSRLVLSNSKAI SSQ+ELRIGSVVTG VQ LKPYGAFIDIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHISDIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           EKADEMAQ FRQRIAQAE MARA LL FQ E
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPE 374

[Close]

BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1CCC9 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009918 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 2.0e-164
Identity = 309/383 (80.68%), Postives = 334/383 (87.21%), Query Frame = 0


Query: 11  LNSRYSYPPLSSSRFSASSWNWNRF----SPNQRPKVLPLVSAAASSPSPISNAQTKGRL 70
           +NS     PLSS R S SS +W RF    S N + + LP+VS+AAS+ +PISNAQTK RL
Sbjct: 1   MNSLAHRVPLSSLRLSVSSSSWRRFSRKESHNHKFRALPVVSSAAST-TPISNAQTKERL 60

Query: 71  KLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVD 130
           KLKQLFKEAYERCCT PMDG+SFTLEDFHAAL+NYDFV+ELGTKVKGTVF TDA+GALVD
Sbjct: 61  KLKQLFKEAYERCCTTPMDGVSFTLEDFHAALSNYDFVSELGTKVKGTVFSTDASGALVD 120

Query: 131 TTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSVQYGLAW 190
           TTAKGTAYLP +EACILKIRHVEE GIYPGLEEEFVIIAE E    LILSLR +QYGLAW
Sbjct: 121 TTAKGTAYLPIEEACILKIRHVEEAGIYPGLEEEFVIIAEHETDGSLILSLRRLQYGLAW 180

Query: 191 ERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFV 250
           ERCRQLQAED+VIKGKVVGA KGG+ VLVEGLRGFVPFSQISAKST EELL+KELRLKFV
Sbjct: 181 ERCRQLQAEDVVIKGKVVGANKGGVFVLVEGLRGFVPFSQISAKSTAEELLDKELRLKFV 240

Query: 251 EVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQ 310
           EVDE+LSRL+LSN KAI +SQAELRIGSVVTGTVQ LK YGAFIDIGG+NGLLH+SQIS 
Sbjct: 241 EVDEELSRLILSNCKAIANSQAELRIGSVVTGTVQILKSYGAFIDIGGVNGLLHISQISH 300

Query: 311 NHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQ 370
           NHISD+ATVL+PGD LKVMILSYD  +GRVSLSTK LEPTPGDMIHNPKLVFEKADEMAQ
Sbjct: 301 NHISDMATVLRPGDTLKVMILSYDHERGRVSLSTKNLEPTPGDMIHNPKLVFEKADEMAQ 360

Query: 371 IFRQRIAQAETMARAGLLGFQLE 390
            FRQRIAQAE MAR  LL  Q E
Sbjct: 361 TFRQRIAQAEAMARVDLLRLQPE 382

[Close]

BLAST of CmUC06G112350 vs. ExPASy TrEMBL
Match: A0A6J1H681 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 2.0e-164
Identity = 316/391 (80.82%), Postives = 334/391 (85.42%), Query Frame = 0


Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           MSS AHQ CGL S     PLSS+  S       RFSP         V +AA+SP+PISNA
Sbjct: 1   MSSLAHQLCGLRS----SPLSSTPISTR----KRFSP---------VVSAAASPTPISNA 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RLKLKQLFKEAYERCC  PMDG+SFTLEDFHAALANYDFV+ELGTKVKGTVF TDA
Sbjct: 61  QTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIA--EQEDGDGLILSLR 180
           NGALVDT+AKGTAYLPTQEACI  IRHVEE GIYPGLEEEFVII   EQED   LILSLR
Sbjct: 121 NGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           SVQYGLAWERCRQLQAED VIKGKVV   KGG+VVLVEGL+GFVPFSQISAKST EELLN
Sbjct: 181 SVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLN 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDEKL RL+LSNSKAIVSSQ+ELRIGSVVTG VQ LKPYGAF+DIGG+NGL
Sbjct: 241 KELLLKFVEVDEKLYRLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQISQNHI DIA VLQPGDMLKVMILSYD ++GR+SLSTKKLEP+PGDM+HNPKLVF
Sbjct: 301 LHVSQISQNHIPDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           EKADEMAQ FRQRIAQAE MARA LL FQ E
Sbjct: 361 EKADEMAQTFRQRIAQAEAMARAELLEFQPE 374

[Close]

BLAST of CmUC06G112350 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 487.3 bits (1253), Expect = 1.2e-137
Identity = 258/389 (66.32%), Postives = 309/389 (79.43%), Query Frame = 0


Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           M+S A Q  GL      P  SSSR S  +     F  N+   V P + AA +    +S+ 
Sbjct: 1   MASLAQQFSGLRCS---PLSSSSRLSRRA--SKNFPQNKSASVSPTIVAAVA----MSSG 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RL+LK++F++AYERC T+PM+G++FT++DF AA+  YDF +E+GT+VKGTVF TDA
Sbjct: 61  QTKERLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLRSV 180
           NGALVD +AK +AYL  ++ACI +I+HVEE GI PG+ EEFVII E E  D L+LSLR++
Sbjct: 121 NGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNI 180

Query: 181 QYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKE 240
           QY LAWERCRQLQAED+++K KV+GA KGGLV LVEGLRGFVPFSQIS+K+  EELL KE
Sbjct: 181 QYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKE 240

Query: 241 LRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLH 300
           + LKFVEVDE+ ++LVLSN KA+  SQA+L IGSVV G VQ LKPYGAFIDIGGINGLLH
Sbjct: 241 IPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLH 300

Query: 301 VSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEK 360
           VSQIS + +SDIATVLQPGD LKVMILS+D ++GRVSLSTKKLEPTPGDMI NPKLVFEK
Sbjct: 301 VSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEK 360

Query: 361 ADEMAQIFRQRIAQAETMARAGLLGFQLE 390
           A+EMAQ FRQRIAQAE MARA +L FQ E
Sbjct: 361 AEEMAQTFRQRIAQAEAMARADMLRFQPE 380

[Close]

BLAST of CmUC06G112350 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 99.0 bits (245), Expect = 9.5e-21
Identity = 66/210 (31.43%), Postives = 118/210 (56.19%), Query Frame = 0


Query: 174 ILSLRSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAK-ST 233
           +LS R     +AW R RQ++  +  I+ K+     GGL+  +EGLR F+P  ++  K +T
Sbjct: 261 LLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNT 320

Query: 234 GEEL---LNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAF 293
             EL   + +   ++   ++E  + L+L  S+ +   +  LR G+++ GTV  + PYGA 
Sbjct: 321 FTELKENVGRRFLVQITRLNEDKNDLIL--SEKVAWEKLYLREGTLLEGTVVKILPYGAQ 380

Query: 294 IDIG--GINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTP 353
           + +G    +GLLH+S I++  I  ++ VLQ  + +KV+++       ++SLS   LE  P
Sbjct: 381 VKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLESEP 440

Query: 354 GDMIHNPKLVFEKADEMAQIFRQRIAQAET 378
           G  I + + VF +A+EMA+ +R+++    T
Sbjct: 441 GLFISDREKVFTEAEEMAKKYREKMPLVAT 467

[Close]

BLAST of CmUC06G112350 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-18
Identity = 54/180 (30.00%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 186 WERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEE---------- 245
           W+  +         +G+V G   GGL++    L GF+P+ Q+S   + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 246 -LLNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAE-LRIGSVVTGTVQFLKPYGAFIDIG 305
            L+  +L +K V+ DE+  +L+LS   A+    ++ + +G V  G V  ++ YGAFI + 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 306 ------GINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTP 348
                  + GL+HVS++S +++ D+  VL+ GD ++V++ + D  K R++LS K+LE  P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]

BLAST of CmUC06G112350 vs. TAIR 10
Match: AT4G29060.1 (elongation factor Ts family protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-10
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 269 ELRIGSVVTGTVQFLKPYGAFIDIGGI-NGLLHVSQISQNHISDIATVLQPGDMLKVMIL 328
           EL  G+  TG V+ ++P+GAF+D G   +GL+HVSQ+S N + D+++V+  G  +KV ++
Sbjct: 132 ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLV 191

Query: 329 SYDCNKGRVSLSTKKLEPTP 348
             D    R+SL+ ++ +  P
Sbjct: 192 EADIESKRISLTMRENDDPP 211

[Close]

BLAST of CmUC06G112350 vs. TAIR 10
Match: AT4G29060.2 (elongation factor Ts family protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-10
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 269 ELRIGSVVTGTVQFLKPYGAFIDIGGI-NGLLHVSQISQNHISDIATVLQPGDMLKVMIL 328
           EL  G+  TG V+ ++P+GAF+D G   +GL+HVSQ+S N + D+++V+  G  +KV ++
Sbjct: 132 ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLV 191

Query: 329 SYDCNKGRVSLSTKKLEPTP 348
             D    R+SL+ ++ +  P
Sbjct: 192 EADIESKRISLTMRENDDPP 211

The following BLAST results are available for this feature:

BLAST of CmUC06G112350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906593.1	1.4e-191	91.03	30S ribosomal protein S1, chloroplastic-like [Benincasa hispida]	[more]
XP_023006590.1	3.8e-165	80.71	30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima]	[more]
XP_022958818.1	8.5e-165	80.46	30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
XP_023006591.1	1.9e-164	81.07	30S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]
XP_022138847.1	4.2e-164	80.68	30S ribosomal protein S1, chloroplastic-like isoform X1 [Momordica charantia]	[more]

BLAST of CmUC06G112350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29344	1.7e-144	71.66	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=...	[more]
Q93VC7	1.7e-136	66.32	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ...	[more]
P46228	5.2e-72	48.12	30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA...	[more]
P73530	5.7e-71	49.32	30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
P51345	1.8e-40	35.88	30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps1 PE=...	[more]

BLAST of CmUC06G112350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L0J3	1.9e-165	80.71	30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1H453	4.1e-165	80.46	30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1KY62	9.2e-165	81.07	30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3...	[more]
A0A6J1CCC9	2.0e-164	80.68	30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia O...	[more]
A0A6J1H681	2.0e-164	80.82	30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX...	[more]

BLAST of CmUC06G112350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30510.1	1.2e-137	66.32	ribosomal protein S1	[more]
AT1G71720.1	9.5e-21	31.43	Nucleic acid-binding proteins superfamily	[more]
AT3G23700.1	2.0e-18	30.00	Nucleic acid-binding proteins superfamily	[more]
AT4G29060.1	3.4e-10	37.50	elongation factor Ts family protein	[more]
AT4G29060.2	3.4e-10	37.50	elongation factor Ts family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035104	Ribosomal protein S1-like	PRINTS	PR00681	RIBOSOMALS1	coord: 108..126 score: 37.59 coord: 217..234 score: 32.54 coord: 199..215 score: 36.97 coord: 126..140 score: 24.76
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 194..260 e-value: 2.7E-7 score: 40.2 coord: 106..178 e-value: 0.016 score: 24.4 coord: 271..341 e-value: 2.9E-22 score: 90.0
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 270..341 e-value: 1.5E-16 score: 60.5 coord: 195..258 e-value: 3.4E-8 score: 33.7
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 196..260 score: 13.699032
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 108..178 score: 10.369238
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 273..341 score: 20.471109
None	No IPR available	GENE3D	2.40.50.140		coord: 189..265 e-value: 1.2E-6 score: 30.5
None	No IPR available	GENE3D	2.40.50.140		coord: 91..188 e-value: 1.7E-5 score: 26.5
None	No IPR available	GENE3D	2.40.50.140		coord: 266..345 e-value: 1.2E-20 score: 75.2
None	No IPR available	PANTHER	PTHR10724:SF11	30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC	coord: 45..390
None	No IPR available	PANTHER	PTHR10724	30S RIBOSOMAL PROTEIN S1	coord: 45..390
None	No IPR available	CDD	cd05692	S1_RPS1_repeat_hs4	coord: 273..341 e-value: 4.21835E-27 score: 100.823
None	No IPR available	CDD	cd04465	S1_RPS1_repeat_ec2_hs2	coord: 196..258 e-value: 3.93777E-20 score: 81.7363
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 196..262
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 266..347
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 106..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G112350.1	CmUC06G112350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding