CmUC06G109280 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G109280
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RNA-binding protein 38
Location	CmU531Chr06: 1121499 .. 1124062 (+)
RNA-Seq Expression	CmUC06G109280
Synteny	CmUC06G109280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAAGGGGTTTCTTTTCTCCTTTTCCTTTTCTATTTTCCACCCTCAAAAACAGTAATCATTTTCTCGTTAAGGGTATCGTTGTTGGAGGAATCTGGGTAGTTGTATTTGTTTGTGTATGTGGAGAAAAGGGTAGTTATTATATTACCTTCAAAAGAAAAAAAAGAAAAATAAATAAATAAAAACCATTCTCCTTCCCCTCCTCCTCTTGAGAGAGAAATATGGGAGTCCATTGATTTGGTCTTGAAAATGTGTGTTTGATTTTGGGGGTTAGATTTCTTTGCATTTAGTTTTGTACTTTTTTGGGGAGAGGAGCATATTTTTGTGTGTTCTCTCTCTAATTTCCCTTATGTCTCAACAGAGGCAATTTCATAACATTAGCAGCAGCAACAATAACAGCAGCCTTAGCCTTGGAGGCCAATACAATGACACGACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAGAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTCCCCCATTTTTTTTCTCTCCCATTTCCCCCTCTTTTTCTTCTTCTCAAAATGGGGATTTGATTTGATTTGATTTCTATTTTTTTGGGTTTTGATTGATTCTGTTTTTAGGTAACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTTATTGATGGAAGAAGAGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCGTCCTCCCACTCCTCAACATGGTTCTTTTTCATTCTTTTCATCTTTACCCTTTTTTTTCCTTAAGTAAATGCTTTGATCTCCTCAATGGATCATAAAAATTCCCACATGCAATGTGTTTTTTTTCCGTTCCAAAACTTGGGATGACTTCCTTCAATGGAGGCCTTTGAATCTGCATTTCTTAAGGACTCATTTTGTCTGAGAAAGAAATCTAAACAAACAAAAGTGGAGTAATATTTTCCCAAACATTAACCAAAAAAAGTTGTGGAACAAATTTGCAGGTGTAGGTGGAAGATTTAGAGGTGCATCTGGGATTGTAACCCCTCCTGCTTATCATGTTTCTTCATCACCTTATATCCATCAACCCACGAGCCAATACTCATTCCCTCTTTCAGGATATGGGTAAGGTTGAAACAAGAATTATAAATGGAATAAACAAGACCCGTTTTTTTTTTTCCATTTTGCCCATTTATTGATTAAAAATGTCCTCTATCTTTCTTTTGGCCTCATTTCAGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGGTGTGAATCTATGTTTATTTGTTTCTATGTTTGTATGTTCATATATGTGTTGTTTCTTTTTGGTTTAATGTTGTTTTGTGTTTGTTTGTGATCTCCTTTGCATTGATTTTGGTCTGAGCGTCGTGTTTTCGATGCAGAATTATTACAGTGTTTACAGTGGCCAACAATTTTCTCCTTATTACCCTGCGAGCGGGATTTCGGGACCAGCTGGAATGTTTCAAAATCTATATCCGTATTATGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATACAGTATCCACACCTAATGCAGTACCCATATCTTCCTCAGCAGCATGGTTCGACTGGTATTCTATCACTTCCTGGCTCGAACGCAATAGGAACGACAACTGCAGGTGCTAAATGAAATACAAATGCTTATAATCTAATCCATTAGTATGTCATTGATGTTGGGAATTGTTATCTGAAGAATGTCATTTGTTTGGAGCATGATGTTGGTTTTGGAATTTATGTGCAAAATGCAACAGGTGCAACAGCAACAACGATAATGGCGGTTGGATCGGGGCCTTCACAAGTTTCTTCTGCAGTAGCATCTGAACCGAATTCGTCCGAGCTAATTTCAACTGGATGATGTTAATGTCTTCTTTATCACACGCTAACCACGTAGACAAAGCTTGGAAAAACAAAACGTCTAAGGGAAGTACTGAATAACAATGGCAAGTTTTTAAGTCGTGTGATTCGATAAAAAGGATGAGAAAAAAGAAATCCATGTTCCAGCATCATCGAGTCATTCGTTAAAGTCGGTAACAAGCATTCCAGAGACAATACAAAGTAAAGTTGATTCAGTAACATCATATCCATCTCTATCAACATTATTTATGTTTGGTCCAATGTATTTGAGAGGAGTCTGCTAGTAGTTTGTTAGAATTAGGCGAAGAATTTTATTCATTCATGTATTAAAGCGAAAGATGGGGGACCGAAAGGAGGCTTTGGATTCCCGTCTTTCGTTCTGACTGCAACAAGACGATCGTGTCGGGGAAGCACGGAGCATCCTATGACACACTCTTGTTTATATAATTAACAGTGAATGGTTCAAAAGATTGATTTTATGTCTTTTGAGCTTCACAATTTCTGGTTGGTCAACATGGAAAGGCAAGCTCCAAAAGCTTAGCTGGTTGATGTGTAATTGATGGATCTTTCTTTGATTAAAATACTTTTGGAGGGGTTGG

mRNA sequence

AACAAAAGGGGTTTCTTTTCTCCTTTTCCTTTTCTATTTTCCACCCTCAAAAACAGTAATCATTTTCTCGTTAAGGGTATCGTTGTTGGAGGAATCTGGGTAGTTGTATTTGTTTGTGTATGTGGAGAAAAGGGTAGTTATTATATTACCTTCAAAAGAAAAAAAAGAAAAATAAATAAATAAAAACCATTCTCCTTCCCCTCCTCCTCTTGAGAGAGAAATATGGGAGTCCATTGATTTGGTCTTGAAAATGTGTGTTTGATTTTGGGGGTTAGATTTCTTTGCATTTAGTTTTGTACTTTTTTGGGGAGAGGAGCATATTTTTGTGTGTTCTCTCTCTAATTTCCCTTATGTCTCAACAGAGGCAATTTCATAACATTAGCAGCAGCAACAATAACAGCAGCCTTAGCCTTGGAGGCCAATACAATGACACGACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAGAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTTATTGATGGAAGAAGAGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCGTCCTCCCACTCCTCAACATGGTGTAGGTGGAAGATTTAGAGGTGCATCTGGGATTGTAACCCCTCCTGCTTATCATGTTTCTTCATCACCTTATATCCATCAACCCACGAGCCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAATTATTACAGTGTTTACAGTGGCCAACAATTTTCTCCTTATTACCCTGCGAGCGGGATTTCGGGACCAGCTGGAATGTTTCAAAATCTATATCCGTATTATGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATACAGTATCCACACCTAATGCAGTACCCATATCTTCCTCAGCAGCATGGTTCGACTGGTATTCTATCACTTCCTGGCTCGAACGCAATAGGAACGACAACTGCAGGTGCAACAGCAACAACGATAATGGCGGTTGGATCGGGGCCTTCACAAGTTTCTTCTGCAGTAGCATCTGAACCGAATTCGTCCGAGCTAATTTCAACTGGATGATGTTAATGTCTTCTTTATCACACGCTAACCACGTAGACAAAGCTTGGAAAAACAAAACGTCTAAGGGAAGTACTGAATAACAATGGCAAGTTTTTAAGTCGTGTGATTCGATAAAAAGGATGAGAAAAAAGAAATCCATGTTCCAGCATCATCGAGTCATTCGTTAAAGTCGGTAACAAGCATTCCAGAGACAATACAAAGTAAAGTTGATTCAGTAACATCATATCCATCTCTATCAACATTATTTATGTTTGGTCCAATGTATTTGAGAGGAGTCTGCTAGTAGTTTGTTAGAATTAGGCGAAGAATTTTATTCATTCATGTATTAAAGCGAAAGATGGGGGACCGAAAGGAGGCTTTGGATTCCCGTCTTTCGTTCTGACTGCAACAAGACGATCGTGTCGGGGAAGCACGGAGCATCCTATGACACACTCTTGTTTATATAATTAACAGTGAATGGTTCAAAAGATTGATTTTATGTCTTTTGAGCTTCACAATTTCTGGTTGGTCAACATGGAAAGGCAAGCTCCAAAAGCTTAGCTGGTTGATGTGTAATTGATGGATCTTTCTTTGATTAAAATACTTTTGGAGGGGTTGG

Coding sequence (CDS)

ATGTCTCAACAGAGGCAATTTCATAACATTAGCAGCAGCAACAATAACAGCAGCCTTAGCCTTGGAGGCCAATACAATGACACGACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAGAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTTATTGATGGAAGAAGAGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCGTCCTCCCACTCCTCAACATGGTGTAGGTGGAAGATTTAGAGGTGCATCTGGGATTGTAACCCCTCCTGCTTATCATGTTTCTTCATCACCTTATATCCATCAACCCACGAGCCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAATTATTACAGTGTTTACAGTGGCCAACAATTTTCTCCTTATTACCCTGCGAGCGGGATTTCGGGACCAGCTGGAATGTTTCAAAATCTATATCCGTATTATGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATACAGTATCCACACCTAATGCAGTACCCATATCTTCCTCAGCAGCATGGTTCGACTGGTATTCTATCACTTCCTGGCTCGAACGCAATAGGAACGACAACTGCAGGTGCAACAGCAACAACGATAATGGCGGTTGGATCGGGGCCTTCACAAGTTTCTTCTGCAGTAGCATCTGAACCGAATTCGTCCGAGCTAATTTCAACTGGATGA

Protein sequence

MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYSGQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILSLPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG

Homology

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BLAST of CmUC06G109280 vs. NCBI nr
Match: XP_038906691.1 (RNA-binding protein 24-B [Benincasa hispida])

HSP 1 Score: 553.1 bits (1424), Expect = 1.4e-153
Identity = 276/286 (96.50%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYY VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+GISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNAIGTTT GA ATTIM VGSGPSQ SSAVASEPNSSELISTG
Sbjct: 241 LPGSNAIGTTTTGAIATTIMGVGSGPSQASSAVASEPNSSELISTG 286

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BLAST of CmUC06G109280 vs. NCBI nr
Match: XP_008460001.1 (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 545.4 bits (1404), Expect = 2.9e-151
Identity = 270/286 (94.41%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYY VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+G+SGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TAT+  AVGSGPSQ SSAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

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BLAST of CmUC06G109280 vs. NCBI nr
Match: XP_004140591.1 (RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_005255 [Cucumis sativus])

HSP 1 Score: 543.5 bits (1399), Expect = 1.1e-150
Identity = 269/286 (94.06%), Postives = 276/286 (96.50%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYY VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+G+SGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TATTI AVGSGPSQ S AVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of CmUC06G109280 vs. NCBI nr
Match: KAA0039913.1 (RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding protein 24-B [Cucumis melo var. makuwa])

HSP 1 Score: 520.4 bits (1339), Expect = 9.9e-144
Identity = 262/286 (91.61%), Postives = 269/286 (94.06%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRS        KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYY VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+G+SGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TAT+  AVGSGPSQ SSAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 278

[Close]

BLAST of CmUC06G109280 vs. NCBI nr
Match: KAG7025354.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 464.9 bits (1195), Expect = 4.9e-127
Identity = 242/289 (83.74%), Postives = 253/289 (87.54%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ R FH    SNN    S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQPRPFH----SNN----SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK     PQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           G GGRFRG SGIVTPPAYHVSSS Y+HQPTSQY FPLS YG++GYSQDRIYP+NYY VY 
Sbjct: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+ I GPAGMFQNLYPYYAQSSQGY FG+QYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAG--ATATTIMAV-GSGPSQVSSAVASEPNSSELISTG 287
           LP S A GTT+AG  AT TT MAV GSGP Q SSAVA+EPNSSE+ISTG
Sbjct: 241 LPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of CmUC06G109280 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-28
Identity = 90/235 (38.30%), Postives = 117/235 (49.79%), Query Frame = 0


Query: 17  SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGF 76
           +S ++ G + DT  TK+FVGGLAW+T +  M  +F ++G+ILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 77  VTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPT---PQHGVGGRFRGASGIV 136
           VTFKD  AA RAC++ +P+I+GRRANCNLASLG    + PT   PQ G     R      
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNR-----A 122

Query: 137 TPPAYHVSSSPYI--------HQPTSQYSFPLSGYGFAGYSQDR-----------IYPLN 196
           TPP     S  Y         HQ  +  + P  GY  A  + +             Y   
Sbjct: 123 TPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQKVGYVGGTYMNG 182

Query: 197 YYSVYSGQQFSPYYP-------------ASGISGPAGMFQNLYPYYAQSSQGYGF 217
           YY+    Q  S   P               G + P   F  +YPY+   SQ  GF
Sbjct: 183 YYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYH--QSQAIGF 230

[Close]

BLAST of CmUC06G109280 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.4e-28
Identity = 84/213 (39.44%), Postives = 115/213 (53.99%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 147 PYIH--------QPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYSGQQFSPYYPASGISG 206
            ++         QPT+  +                     Y  Y+G  ++ Y  A+  + 
Sbjct: 127 AFVQPGVVIPHVQPTAAAA-----------------STTPYIDYTGAAYAQYSAAAAAAA 186

Query: 207 PAGMFQNLYPYYAQ-------SSQGYGFGIQYP 222
            A  +   YPY A        ++ GYG+ +Q P
Sbjct: 187 AAAAYDQ-YPYAASPAAAGYVTAGGYGYAVQQP 200

[Close]

BLAST of CmUC06G109280 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-27
Identity = 88/210 (41.90%), Postives = 112/210 (53.33%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTPPAYHVSSSPYI 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G      + I  P  Y + +    
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRVMQPGFTFGVPQIHPAFIQRP--YGIPTHYVY 126

Query: 147 HQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYSGQQFSPYYPASGISGPAGMFQNLYPY 206
            Q   Q S  +        S     P   Y  Y+G  ++ Y  AS  +  A      YPY
Sbjct: 127 PQAFMQPSVVIPHIQPTATSATASSP---YIDYTGAAYAQY--ASAATAAAAAAYEQYPY 186

Query: 207 YAQ-SSQGYGFGIQYPHLMQYPYLPQQHGS 236
            A  ++ GY     Y + MQ P      GS
Sbjct: 187 AASPAATGYVAAAGYGYAMQQPLATAAPGS 208

[Close]

BLAST of CmUC06G109280 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-27
Identity = 84/207 (40.58%), Postives = 111/207 (53.62%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALIQRPFGIPAHYVYPQ 126

Query: 147 PYIH--------QPTSQYS-FPLSGYGFAGYSQDRIYPLNYYSVYSGQQFSPYYPASGIS 206
            Y+         QPT+  S  P   Y  A Y+Q        YS  +       YP +   
Sbjct: 127 AYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQ--------YSAAAAAAAYDQYPYAASP 186

Query: 207 GPAGMFQNLYPYYAQSSQGYGFGIQYP 222
              G           ++ GYG+ +  P
Sbjct: 187 AATGYV---------TAAGYGYAVPQP 195

[Close]

BLAST of CmUC06G109280 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-27
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 20  SLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 79
           ++ G   DTTFTKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT 
Sbjct: 23  AMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTM 82

Query: 80  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPR 115
            D  AA RAC++P+P+IDGR+AN NLA LGA KPR
Sbjct: 83  ADRAAAERACKDPNPIIDGRKANVNLAYLGA-KPR 116

[Close]

BLAST of CmUC06G109280 vs. ExPASy TrEMBL
Match: A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.4e-151
Identity = 270/286 (94.41%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYY VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+G+SGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TAT+  AVGSGPSQ SSAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of CmUC06G109280 vs. ExPASy TrEMBL
Match: A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 5.3e-151
Identity = 269/286 (94.06%), Postives = 276/286 (96.50%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYY VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+G+SGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TATTI AVGSGPSQ S AVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of CmUC06G109280 vs. ExPASy TrEMBL
Match: A0A5A7TA32 (RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001330 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 4.8e-144
Identity = 262/286 (91.61%), Postives = 269/286 (94.06%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRS        KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYY VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+G+SGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TAT+  AVGSGPSQ SSAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 278

[Close]

BLAST of CmUC06G109280 vs. ExPASy TrEMBL
Match: A0A6J1H998 (RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.2e-126
Identity = 238/288 (82.64%), Postives = 251/288 (87.15%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ R FH        S+ S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQPRPFH--------SNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK     PQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           G GGRFRG SGIVTPPAYHVSSS Y+HQPT+QY FPLS YG++GYSQDRIYP+NYY VY 
Sbjct: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+ I GPAGMFQNLYPYYAQSS GY FG+QYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAG-ATATTIMAV-GSGPSQVSSAVASEPNSSELISTG 287
           LP S A GTT+AG AT TT MAV GSGP Q SSAVA+EPNSSE+ISTG
Sbjct: 241 LPVSTATGTTSAGAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275

[Close]

BLAST of CmUC06G109280 vs. ExPASy TrEMBL
Match: A0A6J1HB82 (RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.5e-126
Identity = 238/289 (82.35%), Postives = 251/289 (86.85%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ R FH        S+ S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQPRPFH--------SNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK     PQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYSVYS 180
           G GGRFRG SGIVTPPAYHVSSS Y+HQPT+QY FPLS YG++GYSQDRIYP+NYY VY 
Sbjct: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+ I GPAGMFQNLYPYYAQSS GY FG+QYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAG--ATATTIMAV-GSGPSQVSSAVASEPNSSELISTG 287
           LP S A GTT+AG  AT TT MAV GSGP Q SSAVA+EPNSSE+ISTG
Sbjct: 241 LPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of CmUC06G109280 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 255.4 bits (651), Expect = 5.5e-68
Identity = 171/342 (50.00%), Postives = 210/342 (61.40%), Query Frame = 0


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           M+QQRQF  +   NNN++        DT  TKIFVGGLAWETQR TMRRYFEQFGEI+EA
Sbjct: 1   MAQQRQF-QMEGGNNNTT--------DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPT-PQ 120
           VVITDKNTGRSKGYGFVTFK+ +AA+RACQN +PVIDGRRANCNLA LGA KPRPPT P+
Sbjct: 61  VVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPR 120

Query: 121 HGVGGRFRGAS---GIVTP-PAYH--VSSSPYIHQP----TSQYSFPLSGYGFAGYSQDR 180
           HG  GRFR      G+V P P +    SSS ++HQ     T+Q+ FP S YGF+GYSQ+ 
Sbjct: 121 HGT-GRFRSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEG 180

Query: 181 IYPLNYYS--VYSGQQFSPY--YPASGISGPAGMFQNLYPYY---------------AQS 240
           +YP+NYY+  +Y GQQFSPY  +P+   +G  GMF   YPYY                Q+
Sbjct: 181 MYPMNYYNHHLYGGQQFSPYMGHPS---AGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQA 240

Query: 241 SQGYGFGIQY-----PHLMQYPYLPQQ-HGST-----------GILSLPGSNAI------ 286
               GF  QY     P L+QYPYLP Q H S+            ILSLP S A+      
Sbjct: 241 QHHQGFSFQYTAPPAPPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSS 300

[Close]

BLAST of CmUC06G109280 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-44
Identity = 106/236 (44.92%), Postives = 132/236 (55.93%), Query Frame = 0


Query: 7   FHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDK 66
           +H+I SS  +    L   + DTTFTK+FVGGLAWETQ  T+RR+F+Q+G+ILEAVVITDK
Sbjct: 3   YHSIPSSGFH---YLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDK 62

Query: 67  NTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------------- 126
           NTGRSKGYGFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG  +P             
Sbjct: 63  NTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGR 122

Query: 127 -RPPTPQHGVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYS----FPLSGYGFAGYSQD 186
            RPP+P  G          + +P   H  S PY   PT  Y     +P   YG   Y  D
Sbjct: 123 VRPPSPYVG---------SVQSPRGLHFGSHPYHQPPTYNYQQGVVYP---YGVTPYGPD 182

Query: 187 RIYPLN--YYSVYSGQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPH 223
            +Y  +  +Y  Y GQQ+   Y   G     G       +    + GY  G  Y H
Sbjct: 183 YMYSQSQGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of CmUC06G109280 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-44
Identity = 106/236 (44.92%), Postives = 132/236 (55.93%), Query Frame = 0


Query: 7   FHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDK 66
           +H+I SS  +    L   + DTTFTK+FVGGLAWETQ  T+RR+F+Q+G+ILEAVVITDK
Sbjct: 3   YHSIPSSGFH---YLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDK 62

Query: 67  NTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------------- 126
           NTGRSKGYGFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG  +P             
Sbjct: 63  NTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGR 122

Query: 127 -RPPTPQHGVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYS----FPLSGYGFAGYSQD 186
            RPP+P  G          + +P   H  S PY   PT  Y     +P   YG   Y  D
Sbjct: 123 VRPPSPYVG---------SVQSPRGLHFGSHPYHQPPTYNYQQGVVYP---YGVTPYGPD 182

Query: 187 RIYPLN--YYSVYSGQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPH 223
            +Y  +  +Y  Y GQQ+   Y   G     G       +    + GY  G  Y H
Sbjct: 183 YMYSQSQGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of CmUC06G109280 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 176.4 bits (446), Expect = 3.3e-44
Identity = 103/213 (48.36%), Postives = 136/213 (63.85%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DP+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHG-VGGRFRGASGIVTPPAYHVSSSPY 146
           +AC +P+PVIDGRRANCNLA+ G  + +P +P HG VGGR      + +P   H  ++  
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGR---GMKVTSPFKTHFGTAAT 122

Query: 147 I---HQPTSQYSFPLSG-YGFAGYSQDRIYPLNYYSVYSGQQFS-PYYPASGISG-PAGM 206
                 P S Y+ P +  +GF+ YS D  YP +YY+VY G     P Y +  ++G  A  
Sbjct: 123 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAP 182

Query: 207 FQNLYPYYAQSSQGYG-----FGIQYP-HLMQY 227
               YP Y Q ++G G       + YP H+  Y
Sbjct: 183 AAGFYP-YLQFAEGNGPVTGYAPLHYPNHMFHY 211

[Close]

BLAST of CmUC06G109280 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-43
Identity = 103/214 (48.13%), Postives = 136/214 (63.55%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DP+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHG-VGGRFRGASGIVTPPAYHVSSSPY 146
           +AC +P+PVIDGRRANCNLA+ G  + +P +P HG VGGR      + +P   H  ++  
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGR---GMKVTSPFKTHFGTAAT 122

Query: 147 I---HQPTSQYSFPLSG-YGFAGYSQDRIYPL-NYYSVYSGQQFS-PYYPASGISG-PAG 206
                 P S Y+ P +  +GF+ YS D  YP  +YY+VY G     P Y +  ++G  A 
Sbjct: 123 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAA 182

Query: 207 MFQNLYPYYAQSSQGYG-----FGIQYP-HLMQY 227
                YP Y Q ++G G       + YP H+  Y
Sbjct: 183 PAAGFYP-YLQFAEGNGPVTGYAPLHYPNHMFHY 212

The following BLAST results are available for this feature:

BLAST of CmUC06G109280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906691.1	1.4e-153	96.50	RNA-binding protein 24-B [Benincasa hispida]	[more]
XP_008460001.1	2.9e-151	94.41	PREDICTED: RNA-binding protein 24-B [Cucumis melo]	[more]
XP_004140591.1	1.1e-150	94.06	RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_00...	[more]
KAA0039913.1	9.9e-144	91.61	RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding prot...	[more]
KAG7025354.1	4.9e-127	83.74	putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmUC06G109280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.4e-28	38.30	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9BX46	5.4e-28	39.44	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q76LC6	2.1e-27	41.90	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
Q6GQD3	3.5e-27	40.58	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9H0Z9	4.6e-27	63.16	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]

BLAST of CmUC06G109280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBZ0	1.4e-151	94.41	RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1	[more]
A0A0A0K998	5.3e-151	94.06	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV...	[more]
A0A5A7TA32	4.8e-144	91.61	RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1H998	1.2e-126	82.64	RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]
A0A6J1HB82	1.5e-126	82.35	RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]

BLAST of CmUC06G109280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46780.1	5.5e-68	50.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.5e-44	44.92	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	1.5e-44	44.92	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.2	3.3e-44	48.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	8.0e-43	48.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 32..104 e-value: 2.9E-24 score: 96.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 33..90 e-value: 4.6E-17 score: 61.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 31..108 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..126 e-value: 1.4E-25 score: 91.8
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..270
None	No IPR available	PANTHER	PTHR11176:SF33	SUBFAMILY NOT NAMED	coord: 1..270
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 31..106 e-value: 6.8389E-46 score: 147.377
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G109280.1	CmUC06G109280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding