CmUC05G104130 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G104130
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	ATP-dependent Clp protease adapter protein ClpS
Location	CmU531Chr05: 32774249 .. 32776427 (-)
RNA-Seq Expression	CmUC05G104130
Synteny	CmUC05G104130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAATCCCAAACCGGGTACAGCTACTTGTATTCATTGTTTTTCTTCTTTAATAATCGTTAAATCATCTTGGGTTTTTGCTAATTTTGATCCGCCATTTCTGATTCCTTGAGAAAGTCCATATTCGTCATCTTTCTCATCTCTATCACTTTCCGGTTCGGTTTGACCTTAATTCTGTGTTGTAATCTTTAATCTCGACTTATATTGACGTCTAAATAAGTTCAGTAGCTTTTACCAAGGTATTTGATGATCCCAACTGATCTCTGAAGTTGTCATGCTTGTGCCTCTCTTGCCATGCTTATCTGTTTCCATTGGGCTAATTGGAATAATTTGATAGCGAGAAGCCAGCAATTCTATAGAATGTACCTTAACACCAAAACGTGCAATATTTTTGGTGGAAAGAGGATTTTCTCTGTGTATGCTGCTGATATCTTGAATGGATTATATCCCATTGTTCCAGAATCTTCTGTTGTGTGGCATCTTCCCTATGCTAGATTTATAGAAGAATCAATCTTCTTTTTTGGTCCCAGTGTGGTCTATAAGCTTCCTAGCATATGGTATCCCACTTCAATTTCCCATCTTATAGCTTTTCTTCTATAATTTCCCCCCTTTGTACTTTGCTTTATAAGCTTTGTTTTGTGGGGGTTCCATATTCTTTTTTGCATATGGCTTAGTTGTCAATCACGTTGGAAGCTCCATTGTTTCTGGCTATCAATGGATTAATCTACTTTCTATTCTTTTGAAGATTGAGAGTACCTTTTTTTTTTTTTTTTTTTTTACTTTATTGATTCCATTGCTTTATTTGCTTTGTTATATTTATATCATTAGATTCTTTCTTCCCATTTTGCAACTTTTTCTTATTTTTCAAAGCGCAGCACTATGATTGGATTAGCAATGGATAATATTAGCTTCTTATAAAAGTTTAATTTCAGGGGACAGAAGCTCTGTGTGTAAAGGACTATGCTCTAACTTTGGCGCATCGGTTGTTAAATCAGCACCAACAGCAGGAAGAGGAGGAGGAGGGTTGTTGGAGAGACCTGTTATTGAGAAAGCAACTCCTGGAAGAGAATCCGAGTTTGATTTGAGGTATTAAACATTAGCCCGTACAGTTATGTATTGAAAAGACTACTATATACTGAACTAGAAAAGGGGACAAAGAAAGAATAAAGTATACCAGTTAAAGGCCTTAAAGAGATGGACAGATTCTGGTGTAGGGTCATCCGAAGACCAATGGTTAGATAGTTTTCAATAATCTTTACCATTTGAATTCTAAATCAGGACTACTGCTCTTACGCTATGCATATCTTTATTGTTCATGTATTGTATAAATCATTTTGTGTTGCCAATGCAATACTTTGGATGATTTTTGAGACAATGTCAGCTATGCCATGTTGACCTTTGCGTGGGAACACCGAAACCAAAGCATCTTTATTTATATGAATTACAGCATTTGTTTTTGGAGTTAGCCTTTGTGCTTGTAGCTCAACCAATTGTCAATCTGTCATTAACTGAAACTTAATACATTGACTTTTGTTTCTGAATATTCAGAAGGATTTGCATTAAAAGAATTGCAGTATAAAAGTAAATGGGGAAAAAGGAGTGGTTATGATCCTGAATTGCAACTGTTGAAAATCACTGATTTTTTTCTTTCTTGACTGTACAAATGAAACCAAGTAGCTAAGTTCTTGCGACTTAGGCAGATTTCTGGTTAATTAGCAGGATGTTGAAATTAATTCTGAGTGTTTCATTGTATAACTTCATTCTGCATAAATGTGCTGACTTCAATTTTCTCTGTTGGATAGTTATTTTCCATAGAACAATACAACATATATGTAAGTAATCATTCTGTATCAACGAAATCATTCAGGAGATCAAGGAAAATGACACCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTTGTTCAAGTCCTGATGAAGGTCATCCCTGGAATGACACTTGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGGTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGATGCTGTTAA

mRNA sequence

ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAATCCCAAACCGGCGAGAAGCCAGCAATTCTATAGAATGTACCTTAACACCAAAACGTGCAATATTTTTGGTGGAAAGAGGATTTTCTCTGTGTATGCTGCTGATATCTTGAATGGATTATATCCCATTGTTCCAGAATCTTCTGTTGTGTGGCATCTTCCCTATGCTAGATTTATAGAAGAATCAATCTTCTTTTTTGGTCCCAGTGTGGTCTATAAGCTTCCTAGCATATGTTGTCAATCACAAGGATTTGCATTAAAAGAATTGCAGTATAAAAAACAATACAACATATATGTAAGTAATCATTCTGTATCAACGAAATCATTCAGGAGATCAAGGAAAATGACACCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTTGTTCAAGTCCTGATGAAGGTCATCCCTGGAATGACACTTGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGGTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGATGCTGTTAA

Coding sequence (CDS)

ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAATCCCAAACCGGCGAGAAGCCAGCAATTCTATAGAATGTACCTTAACACCAAAACGTGCAATATTTTTGGTGGAAAGAGGATTTTCTCTGTGTATGCTGCTGATATCTTGAATGGATTATATCCCATTGTTCCAGAATCTTCTGTTGTGTGGCATCTTCCCTATGCTAGATTTATAGAAGAATCAATCTTCTTTTTTGGTCCCAGTGTGGTCTATAAGCTTCCTAGCATATGTTGTCAATCACAAGGATTTGCATTAAAAGAATTGCAGTATAAAAAACAATACAACATATATGTAAGTAATCATTCTGTATCAACGAAATCATTCAGGAGATCAAGGAAAATGACACCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTTGTTCAAGTCCTGATGAAGGTCATCCCTGGAATGACACTTGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGGTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGATGCTGTTAA

Protein sequence

MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLYPIVPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSNHSVSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

Homology

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BLAST of CmUC05G104130 vs. NCBI nr
Match: XP_008446565.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Cucumis melo] >KAA0034534.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa] >TYK09088.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 4.5e-48
Identity = 123/214 (57.48%), Postives = 130/214 (60.75%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLYPI 60
           MEIAICGKLA+SPNHVFNPKP                    G R      + +  GL   
Sbjct: 1   MEIAICGKLAVSPNHVFNPKP--------------------GDR------SSMCKGL--- 60

Query: 61  VPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSNHS 120
                               F FG SVV    S     +G  L E    ++     +   
Sbjct: 61  -------------------CFNFGASVV---KSAATAGRGGGLLERPVIEK----ATPGR 120

Query: 121 VSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 180
            S    RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS
Sbjct: 121 ESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 159

Query: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CmUC05G104130 vs. NCBI nr
Match: XP_038891525.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-47
Identity = 119/216 (55.09%), Postives = 128/216 (59.26%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLY-- 60
           MEIAICGKLALSPNHVFNPKP       R  +    C+ FG   + S   A    GL   
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGD-----RSSVCKGLCSNFGASVVKSAPTAGRGGGLLER 60

Query: 61  PIVPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSN 120
           P++ +++            ES F                                     
Sbjct: 61  PVIEKATPG---------RESEF------------------------------------- 120

Query: 121 HSVSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNG 180
                   R+SRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH NG
Sbjct: 121 ------DLRKSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHCNG 159

Query: 181 LSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           LSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 181 LSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CmUC05G104130 vs. NCBI nr
Match: XP_022150471.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 4.9e-47
Identity = 118/216 (54.63%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLY-- 60
           MEIAICGKLALSPNHVFNP+P       R       C+  G   + S   A    GL   
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCR-----GLCSSLGAAIVKSATTAGKGGGLLER 60

Query: 61  PIVPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSN 120
           P++ +++            ES F                                     
Sbjct: 61  PVIEKATPG---------RESEF------------------------------------- 120

Query: 121 HSVSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNG 180
                   RRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNG
Sbjct: 121 ------DLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNG 159

Query: 181 LSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           LSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 181 LSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CmUC05G104130 vs. NCBI nr
Match: XP_011655763.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 1.9e-46
Identity = 122/214 (57.01%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLYPI 60
           MEIAI GKLALSPNHVFNPKP                    G R      + +  GL   
Sbjct: 1   MEIAIRGKLALSPNHVFNPKP--------------------GDR------SSVCKGL--- 60

Query: 61  VPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSNHS 120
                               F FG SVV    S     +G  L E    ++     +   
Sbjct: 61  -------------------CFNFGASVV---KSAATAGRGGGLLERPVIEK----ATPGR 120

Query: 121 VSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 180
            S    RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS
Sbjct: 121 ESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 159

Query: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           LVIICAQADAE HCMQLRGNGLLSSIEPASGGCC
Sbjct: 181 LVIICAQADAEGHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CmUC05G104130 vs. NCBI nr
Match: KAG6573986.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 4.2e-46
Identity = 117/233 (50.21%), Postives = 144/233 (61.80%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLY-- 60
           MEIAICGKLALSPNHVFNPKP       +   +T   ++     + S   A    GL   
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASV-----VKSATTAGRGGGLLER 60

Query: 61  PIVPESS----------------VVWHLP-YARFIEESIFFFGPSVVYKLPSICCQSQGF 120
           P++ +++                 + H+  Y    +++      + +  +P +       
Sbjct: 61  PVIEKATPGRESEFDLRDMVILLAMCHVELYVGKPKKTKLEVETTKLAYVPEV------- 120

Query: 121 ALKELQYKKQYNIYVSNHSVSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPG 180
              EL Y  +  +  +  + + +S RRSRK TPPYRVILHNDDFN+REYVVQVLMKVIPG
Sbjct: 121 ETTELAYVPE--VETTELAYAPESQRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPG 180

Query: 181 MTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           MTLDNAVNIMQEAH NG+SLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Sbjct: 181 MTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 219

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BLAST of CmUC05G104130 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.3e-38
Identity = 73/87 (83.91%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 127 RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICA 186
           R+S+K+ PPYRVILHND+FNKREYVVQVLMKVIPGMT+DNAVNIMQEAH NGL++VI+CA
Sbjct: 73  RKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCA 132

Query: 187 QADAEEHCMQLRGNGLLSSIEPASGGC 214
           QADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 133 QADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of CmUC05G104130 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-21
Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 128 RSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQ 187
           RS+K  P Y+V+LHND++NKREYVV+VL+KV+  +T+D+AV  MQEAH  G++LV+ C Q
Sbjct: 79  RSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITVDDAVTCMQEAHETGVALVVACPQ 138

Query: 188 ADAEEHCMQLRGNGLLSSIEPASGGC 214
            +AE +C  LR NGL S+IEP  GGC
Sbjct: 139 DNAERYCEGLRLNGLTSTIEP--GGC 162

[Close]

BLAST of CmUC05G104130 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-19
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 130 RKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQAD 189
           RK+ P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 190 AEEHCMQLRGNGLLSSIEP 209
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of CmUC05G104130 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-16
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 130 RKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQAD 189
           RK+ P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 190 AEEHCMQLRGNGL 203
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of CmUC05G104130 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-14
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 120 SVSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGL 179
           +V  K+  R RK +P Y+V+LHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+
Sbjct: 14  AVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEAHNTGV 73

Query: 180 SLVIICAQADAEEHCMQLRGNGLLSSIEP 209
            LVI+C    AE +C  L+  GL SSIEP
Sbjct: 74  GLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

[Close]

BLAST of CmUC05G104130 vs. ExPASy TrEMBL
Match: A0A5A7STJ9 (ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00780 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-48
Identity = 123/214 (57.48%), Postives = 130/214 (60.75%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLYPI 60
           MEIAICGKLA+SPNHVFNPKP                    G R      + +  GL   
Sbjct: 1   MEIAICGKLAVSPNHVFNPKP--------------------GDR------SSMCKGL--- 60

Query: 61  VPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSNHS 120
                               F FG SVV    S     +G  L E    ++     +   
Sbjct: 61  -------------------CFNFGASVV---KSAATAGRGGGLLERPVIEK----ATPGR 120

Query: 121 VSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 180
            S    RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS
Sbjct: 121 ESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 159

Query: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CmUC05G104130 vs. ExPASy TrEMBL
Match: A0A1S3BG61 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489260 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-48
Identity = 123/214 (57.48%), Postives = 130/214 (60.75%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLYPI 60
           MEIAICGKLA+SPNHVFNPKP                    G R      + +  GL   
Sbjct: 1   MEIAICGKLAVSPNHVFNPKP--------------------GDR------SSMCKGL--- 60

Query: 61  VPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSNHS 120
                               F FG SVV    S     +G  L E    ++     +   
Sbjct: 61  -------------------CFNFGASVV---KSAATAGRGGGLLERPVIEK----ATPGR 120

Query: 121 VSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 180
            S    RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS
Sbjct: 121 ESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 159

Query: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CmUC05G104130 vs. ExPASy TrEMBL
Match: A0A6J1DBL1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018609 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47
Identity = 118/216 (54.63%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLY-- 60
           MEIAICGKLALSPNHVFNP+P       R       C+  G   + S   A    GL   
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCR-----GLCSSLGAAIVKSATTAGKGGGLLER 60

Query: 61  PIVPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSN 120
           P++ +++            ES F                                     
Sbjct: 61  PVIEKATPG---------RESEF------------------------------------- 120

Query: 121 HSVSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNG 180
                   RRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNG
Sbjct: 121 ------DLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNG 159

Query: 181 LSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           LSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 181 LSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CmUC05G104130 vs. ExPASy TrEMBL
Match: A0A0A0KWD9 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 9.1e-47
Identity = 122/214 (57.01%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLYPI 60
           MEIAI GKLALSPNHVFNPKP                    G R      + +  GL   
Sbjct: 1   MEIAIRGKLALSPNHVFNPKP--------------------GDR------SSVCKGL--- 60

Query: 61  VPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSNHS 120
                               F FG SVV    S     +G  L E    ++     +   
Sbjct: 61  -------------------CFNFGASVV---KSAATAGRGGGLLERPVIEK----ATPGR 120

Query: 121 VSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 180
            S    RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS
Sbjct: 121 ESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 159

Query: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           LVIICAQADAE HCMQLRGNGLLSSIEPASGGCC
Sbjct: 181 LVIICAQADAEGHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of CmUC05G104130 vs. ExPASy TrEMBL
Match: A0A6J1HZX0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467734 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 117/214 (54.67%), Postives = 126/214 (58.88%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPARSQQFYRMYLNTKTCNIFGGKRIFSVYAADILNGLYPI 60
           MEIAICGKLALSPNHVFNPKP                    G R      + +  GL   
Sbjct: 1   MEIAICGKLALSPNHVFNPKP--------------------GDR------SSVCKGLCST 60

Query: 61  VPESSVVWHLPYARFIEESIFFFGPSVVYKLPSICCQSQGFALKELQYKKQYNIYVSNHS 120
           +  S                       V K  +   +  G  L+    +K      +   
Sbjct: 61  LCAS-----------------------VVKSATTAGRGGGGLLERPVIEK-----ATPGR 120

Query: 121 VSTKSFRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS 180
            S    RRSRK TPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEAH NGLS
Sbjct: 121 ESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGLS 160

Query: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 215
           LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 181 LVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of CmUC05G104130 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-39
Identity = 73/87 (83.91%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 127 RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICA 186
           R+S+K+ PPYRVILHND+FNKREYVVQVLMKVIPGMT+DNAVNIMQEAH NGL++VI+CA
Sbjct: 73  RKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCA 132

Query: 187 QADAEEHCMQLRGNGLLSSIEPASGGC 214
           QADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 133 QADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of CmUC05G104130 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 91.7 bits (226), Expect = 7.9e-19
Identity = 48/87 (55.17%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 127 RRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICA 186
           R+S+K+ PPYRVILHND+FNKREYVVQVLMK                             
Sbjct: 73  RKSKKIAPPYRVILHNDNFNKREYVVQVLMK----------------------------- 129

Query: 187 QADAEEHCMQLRGNGLLSSIEPASGGC 214
            ADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 133 -ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of CmUC05G104130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446565.1	4.5e-48	57.48	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_038891525.1	2.2e-47	55.09	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
XP_022150471.1	4.9e-47	54.63	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica chara...	[more]
XP_011655763.1	1.9e-46	57.01	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
KAG6573986.1	4.2e-46	50.21	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurb...	[more]

BLAST of CmUC05G104130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	4.3e-38	83.91	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	2.8e-21	58.14	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	3.5e-19	59.49	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.6e-16	57.53	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	2.0e-14	44.94	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of CmUC05G104130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STJ9	2.2e-48	57.48	ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BG61	2.2e-48	57.48	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A6J1DBL1	2.4e-47	54.63	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica cha...	[more]
A0A0A0KWD9	9.1e-47	57.01	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 S...	[more]
A0A6J1HZX0	2.2e-45	54.67	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]

BLAST of CmUC05G104130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	3.1e-39	83.91	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	7.9e-19	55.17	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 133..199 e-value: 2.3E-18 score: 65.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 130..208 e-value: 3.5E-21 score: 76.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 130..208
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 124..213
None	No IPR available	PANTHER	PTHR33473:SF15	BNAA07G24510D PROTEIN	coord: 124..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G104130.1	CmUC05G104130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity