CmUC05G087970 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G087970
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	villin-3-like
Location	CmU531Chr05: 6664915 .. 6665664 (-)
RNA-Seq Expression	CmUC05G087970
Synteny	CmUC05G087970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTTATTCTTCTTGTTATTATTGGTTAGAAAAACTTAGGAGCATGACTGAAGGTTAGAAACCCACACCGTTGGGCTTGGTATCGTCAGTTTCTACAGTCAGGTGTTCCTTTGAAACAAGCGAAGGAAGGAACAAATAGTTCAACCTTCTAGTTTGCACTTGGGGGGAAACAAAAGTTACAACAATAAAAAAGTATCTCAGGATATTGTCAGGGATCCTCACTTGTATGCATTTTCATTCAGTAAAGGTGACATGTGTTCTTTAATTTACTAGAAATTATCTTATTTGGTATTTAACTGTTATCATTGCTGACTATTCAATTTGACTGCTTCAACTTTGTTGTTGATCTTCCTATTTGTACTAGCAGGATAGTTCCAGGTGAATATTTGGATTTCTTGTTAATGAAGAAATTAATCAGATGCAATGTTATGATCTTATATTCACCATGCGCAGGTAGTGGAAATTTTACAATTTCTCTCAAGATGATTTGTTCACAGAGGATATCTTGATACTTGACACTCAAGGTGAAGTGTTTATTTGTATTGGTCAATCTGTAGGCCCCAAAGAAAAGCAAAATGCTTGGGAAATTGGTCAGGTAGGAATCTCAGAACTTTATTGTGTTGTCTACACTTCAATTTGCTTTTATTCATATCATTCTTTCGTTCTTTTTCCTCAGAAATATGTAGAGATGGATCCATCTCTACAGAGATTGTCTCCTAATGTACTGTTATATAAAGTTTCTTAA

mRNA sequence

ATGTTTGTTTATTCTTCTTGTTATTATTGGTTAGAAAAACTTAGGAGCATGACTGAAGAGGATATCTTGATACTTGACACTCAAGGTGAAGTGTTTATTTGTATTGGTCAATCTGTAGGCCCCAAAGAAAAGCAAAATGCTTGGGAAATTGGTCAGAAATATGTAGAGATGGATCCATCTCTACAGAGATTGTCTCCTAATGTACTGTTATATAAAGTTTCTTAA

Coding sequence (CDS)

ATGTTTGTTTATTCTTCTTGTTATTATTGGTTAGAAAAACTTAGGAGCATGACTGAAGAGGATATCTTGATACTTGACACTCAAGGTGAAGTGTTTATTTGTATTGGTCAATCTGTAGGCCCCAAAGAAAAGCAAAATGCTTGGGAAATTGGTCAGAAATATGTAGAGATGGATCCATCTCTACAGAGATTGTCTCCTAATGTACTGTTATATAAAGTTTCTTAA

Protein sequence

MFVYSSCYYWLEKLRSMTEEDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS

Homology

[Close]

BLAST of CmUC05G087970 vs. NCBI nr
Match: XP_022154223.1 (villin-3-like [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 7.7e-16
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 2   FVYSSCYYWLEKLRSMTE-----EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVE 61
           F +S   + +E++ + ++     EDILILDTQ EVFI +GQSV PKEKQNAWEIGQKYVE
Sbjct: 628 FSFSRGKFQVEEIYNFSQDDLLTEDILILDTQAEVFIWVGQSVDPKEKQNAWEIGQKYVE 687

Query: 62  MDPSLQRLSPNVLLYKVS 75
           M  SL+ LSPNV LYKVS
Sbjct: 688 MAASLEGLSPNVPLYKVS 705

[Close]

BLAST of CmUC05G087970 vs. NCBI nr
Match: XP_038904138.1 (villin-3-like [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 7.7e-16
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDILILDTQ EVFI IGQSV PKEKQNAWEIGQKYVEM  SL+ LSPNV LYKVS
Sbjct: 651 EDILILDTQAEVFIWIGQSVDPKEKQNAWEIGQKYVEMATSLEGLSPNVPLYKVS 705

[Close]

BLAST of CmUC05G087970 vs. NCBI nr
Match: XP_008443130.1 (PREDICTED: villin-3 [Cucumis melo] >XP_008443131.1 PREDICTED: villin-3 [Cucumis melo] >TYK25445.1 villin-3 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDILILDTQ EVFI +GQSV PKEKQNAWEIGQKYVEM  SL+ LSPNV LYK+S
Sbjct: 651 EDILILDTQAEVFIWVGQSVDPKEKQNAWEIGQKYVEMAASLEGLSPNVPLYKIS 705

[Close]

BLAST of CmUC05G087970 vs. NCBI nr
Match: XP_022971278.1 (villin-3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-15
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDILILDTQ EVFI IGQSV PKEKQNAWEIGQKYVEM  SL+ L PNV LYKVS
Sbjct: 651 EDILILDTQAEVFIWIGQSVDPKEKQNAWEIGQKYVEMAASLEGLPPNVPLYKVS 705

[Close]

BLAST of CmUC05G087970 vs. NCBI nr
Match: XP_004136595.1 (villin-3 [Cucumis sativus] >XP_011652131.1 villin-3 [Cucumis sativus] >KGN59352.1 hypothetical protein Csa_001882 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-15
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDILILDTQ EVFI IGQSV PKEKQNAWEIGQKYVEM  SL+ LSP+V LYKVS
Sbjct: 651 EDILILDTQAEVFIWIGQSVDPKEKQNAWEIGQKYVEMAASLEGLSPHVPLYKVS 705

[Close]

BLAST of CmUC05G087970 vs. ExPASy Swiss-Prot
Match: O81645 (Villin-3 OS=Arabidopsis thaliana OX=3702 GN=VLN3 PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 9.2e-12
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 2   FVYSSCYYWLEKLRSMTEEDIL-----ILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVE 61
           F ++   + +E++ +  ++D+L     +LDT  EVF+ +GQ V PKEKQ A+EIGQ+Y+ 
Sbjct: 628 FSFNRGKFQVEEIHNFDQDDLLTEEMHLLDTHAEVFVWVGQCVDPKEKQTAFEIGQRYIN 687

Query: 62  MDPSLQRLSPNVLLYKVS 75
           +  SL+ LSP V LYK++
Sbjct: 688 LAGSLEGLSPKVPLYKIT 705

[Close]

BLAST of CmUC05G087970 vs. ExPASy Swiss-Prot
Match: Q10L71 (Villin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN2 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.5e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKV 74
           ED+++LDT GEVF+ +GQ V  KEKQ A+EIGQKY E   + + LSP+V LYKV
Sbjct: 654 EDMMVLDTHGEVFVWMGQCVDAKEKQKAFEIGQKYAEHAAAFESLSPDVPLYKV 707

[Close]

BLAST of CmUC05G087970 vs. ExPASy Swiss-Prot
Match: O81644 (Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDI  LDT  EVF+ +GQ V PKEKQ  +EIGQKY+++  SL+ L P V +YK++
Sbjct: 649 EDIYFLDTHAEVFVWVGQCVEPKEKQTVFEIGQKYIDLAGSLEGLHPKVPIYKIN 703

[Close]

BLAST of CmUC05G087970 vs. ExPASy Swiss-Prot
Match: O65570 (Villin-4 OS=Arabidopsis thaliana OX=3702 GN=VLN4 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-07
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKV 74
           EDI I+D   E+F+ +GQ V PK K  A  IG+K++E D  L++LSP   +Y +
Sbjct: 650 EDIFIIDCHSEIFVWVGQEVVPKNKLLALTIGEKFIEKDSLLEKLSPEAPIYVI 703

[Close]

BLAST of CmUC05G087970 vs. ExPASy Swiss-Prot
Match: Q9LVC6 (Villin-5 OS=Arabidopsis thaliana OX=3702 GN=VLN5 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-06
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 6   SCYYWLEKLRS----------MTEEDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYV 65
           SC Y  E L++          +  EDI ILD   EVF+ +GQ V PK+K  A +IG+ ++
Sbjct: 628 SCTYTNESLKATEIFNFTQDDLMTEDIFILDCHTEVFVWVGQQVDPKKKPQALDIGENFL 687

Query: 66  EMDPSLQRLSPNVLLYKVS 75
           + D  L+ L+    +Y V+
Sbjct: 688 KHDFLLENLASETPIYIVT 706

[Close]

BLAST of CmUC05G087970 vs. ExPASy TrEMBL
Match: A0A6J1DJQ1 (villin-3-like OS=Momordica charantia OX=3673 GN=LOC111021533 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.7e-16
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 2   FVYSSCYYWLEKLRSMTE-----EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVE 61
           F +S   + +E++ + ++     EDILILDTQ EVFI +GQSV PKEKQNAWEIGQKYVE
Sbjct: 628 FSFSRGKFQVEEIYNFSQDDLLTEDILILDTQAEVFIWVGQSVDPKEKQNAWEIGQKYVE 687

Query: 62  MDPSLQRLSPNVLLYKVS 75
           M  SL+ LSPNV LYKVS
Sbjct: 688 MAASLEGLSPNVPLYKVS 705

[Close]

BLAST of CmUC05G087970 vs. ExPASy TrEMBL
Match: A0A1S3B6V5 (villin-3 OS=Cucumis melo OX=3656 GN=LOC103486814 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.4e-16
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDILILDTQ EVFI +GQSV PKEKQNAWEIGQKYVEM  SL+ LSPNV LYK+S
Sbjct: 651 EDILILDTQAEVFIWVGQSVDPKEKQNAWEIGQKYVEMAASLEGLSPNVPLYKIS 705

[Close]

BLAST of CmUC05G087970 vs. ExPASy TrEMBL
Match: A0A5D3DPM9 (Villin-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005900 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.4e-16
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDILILDTQ EVFI +GQSV PKEKQNAWEIGQKYVEM  SL+ LSPNV LYK+S
Sbjct: 651 EDILILDTQAEVFIWVGQSVDPKEKQNAWEIGQKYVEMAASLEGLSPNVPLYKIS 705

[Close]

BLAST of CmUC05G087970 vs. ExPASy TrEMBL
Match: A0A6J1I836 (villin-3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470046 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDILILDTQ EVFI IGQSV PKEKQNAWEIGQKYVEM  SL+ L PNV LYKVS
Sbjct: 651 EDILILDTQAEVFIWIGQSVDPKEKQNAWEIGQKYVEMAASLEGLPPNVPLYKVS 705

[Close]

BLAST of CmUC05G087970 vs. ExPASy TrEMBL
Match: A0A6J1I6D2 (villin-3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470046 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDILILDTQ EVFI IGQSV PKEKQNAWEIGQKYVEM  SL+ L PNV LYKVS
Sbjct: 651 EDILILDTQAEVFIWIGQSVDPKEKQNAWEIGQKYVEMAASLEGLPPNVPLYKVS 705

[Close]

BLAST of CmUC05G087970 vs. TAIR 10
Match: AT3G57410.1 (villin 3 )

HSP 1 Score: 70.5 bits (171), Expect = 6.5e-13
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 2   FVYSSCYYWLEKLRSMTEEDIL-----ILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVE 61
           F ++   + +E++ +  ++D+L     +LDT  EVF+ +GQ V PKEKQ A+EIGQ+Y+ 
Sbjct: 628 FSFNRGKFQVEEIHNFDQDDLLTEEMHLLDTHAEVFVWVGQCVDPKEKQTAFEIGQRYIN 687

Query: 62  MDPSLQRLSPNVLLYKVS 75
           +  SL+ LSP V LYK++
Sbjct: 688 LAGSLEGLSPKVPLYKIT 705

[Close]

BLAST of CmUC05G087970 vs. TAIR 10
Match: AT2G41740.1 (villin 2 )

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-12
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKVS 75
           EDI  LDT  EVF+ +GQ V PKEKQ  +EIGQKY+++  SL+ L P V +YK++
Sbjct: 649 EDIYFLDTHAEVFVWVGQCVEPKEKQTVFEIGQKYIDLAGSLEGLHPKVPIYKIN 703

[Close]

BLAST of CmUC05G087970 vs. TAIR 10
Match: AT4G30160.1 (villin 4 )

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKV 74
           EDI I+D   E+F+ +GQ V PK K  A  IG+K++E D  L++LSP   +Y +
Sbjct: 650 EDIFIIDCHSEIFVWVGQEVVPKNKLLALTIGEKFIEKDSLLEKLSPEAPIYVI 703

[Close]

BLAST of CmUC05G087970 vs. TAIR 10
Match: AT4G30160.2 (villin 4 )

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 20  EDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYVEMDPSLQRLSPNVLLYKV 74
           EDI I+D   E+F+ +GQ V PK K  A  IG+K++E D  L++LSP   +Y +
Sbjct: 659 EDIFIIDCHSEIFVWVGQEVVPKNKLLALTIGEKFIEKDSLLEKLSPEAPIYVI 712

[Close]

BLAST of CmUC05G087970 vs. TAIR 10
Match: AT5G57320.1 (villin, putative )

HSP 1 Score: 51.6 bits (122), Expect = 3.1e-07
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 6   SCYYWLEKLRS----------MTEEDILILDTQGEVFICIGQSVGPKEKQNAWEIGQKYV 65
           SC Y  E L++          +  EDI ILD   EVF+ +GQ V PK+K  A +IG+ ++
Sbjct: 628 SCTYTNESLKATEIFNFTQDDLMTEDIFILDCHTEVFVWVGQQVDPKKKPQALDIGENFL 687

Query: 66  EMDPSLQRLSPNVLLYKVS 75
           + D  L+ L+    +Y V+
Sbjct: 688 KHDFLLENLASETPIYIVT 706

The following BLAST results are available for this feature:

BLAST of CmUC05G087970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154223.1	7.7e-16	62.82	villin-3-like [Momordica charantia]	[more]
XP_038904138.1	7.7e-16	85.45	villin-3-like [Benincasa hispida]	[more]
XP_008443130.1	1.3e-15	81.82	PREDICTED: villin-3 [Cucumis melo] >XP_008443131.1 PREDICTED: villin-3 [Cucumis ...	[more]
XP_022971278.1	2.9e-15	83.64	villin-3-like isoform X1 [Cucurbita maxima]	[more]
XP_004136595.1	2.9e-15	83.64	villin-3 [Cucumis sativus] >XP_011652131.1 villin-3 [Cucumis sativus] >KGN59352....	[more]

BLAST of CmUC05G087970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81645	9.2e-12	42.31	Villin-3 OS=Arabidopsis thaliana OX=3702 GN=VLN3 PE=1 SV=2	[more]
Q10L71	3.5e-11	59.26	Villin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN2 PE=2 SV=1	[more]
O81644	5.9e-11	54.55	Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2	[more]
O65570	3.1e-07	44.44	Villin-4 OS=Arabidopsis thaliana OX=3702 GN=VLN4 PE=1 SV=1	[more]
Q9LVC6	4.4e-06	35.44	Villin-5 OS=Arabidopsis thaliana OX=3702 GN=VLN5 PE=2 SV=1	[more]

BLAST of CmUC05G087970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJQ1	3.7e-16	62.82	villin-3-like OS=Momordica charantia OX=3673 GN=LOC111021533 PE=4 SV=1	[more]
A0A1S3B6V5	6.4e-16	81.82	villin-3 OS=Cucumis melo OX=3656 GN=LOC103486814 PE=4 SV=1	[more]
A0A5D3DPM9	6.4e-16	81.82	Villin-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005900 PE=4...	[more]
A0A6J1I836	1.4e-15	83.64	villin-3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470046 PE=4 SV=1	[more]
A0A6J1I6D2	1.4e-15	83.64	villin-3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470046 PE=4 SV=1	[more]

BLAST of CmUC05G087970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57410.1	6.5e-13	42.31	villin 3	[more]
AT2G41740.1	4.2e-12	54.55	villin 2	[more]
AT4G30160.1	2.2e-08	44.44	villin 4	[more]
AT4G30160.2	2.2e-08	44.44	villin 4	[more]
AT5G57320.1	3.1e-07	35.44	villin, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007122	Villin/Gelsolin	PRINTS	PR00597	GELSOLIN	coord: 43..62 score: 35.68 coord: 14..36 score: 34.39
IPR007122	Villin/Gelsolin	PANTHER	PTHR11977	VILLIN	coord: 18..73
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 7..74 e-value: 4.4E-8 score: 35.0
None	No IPR available	PANTHER	PTHR11977:SF113	VILLIN-3-LIKE ISOFORM X1	coord: 18..73
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 15..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G087970.1	CmUC05G087970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051693	actin filament capping
biological_process	GO:0051014	actin filament severing
molecular_function	GO:0051015	actin filament binding