CmUC05G086070 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G086070
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Photosystem I reaction center subunit II, chloroplastic
Location	CmU531Chr05: 4838958 .. 4839587 (-)
RNA-Seq Expression	CmUC05G086070
Synteny	CmUC05G086070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCACCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCACCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCACCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQAAPVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

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BLAST of CmUC05G086070 vs. NCBI nr
Match: XP_038876164.1 (photosystem I reaction center subunit II, chloroplastic [Benincasa hispida])

HSP 1 Score: 390.6 bits (1002), Expect = 8.6e-105
Identity = 203/210 (96.67%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSAEAEAQA 60
           MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSF+NSKP LKPASSSRSLKVSAEAE   
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAE--- 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A VEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AAVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CmUC05G086070 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.9 bits (982), Expect = 1.8e-102
Identity = 197/210 (93.81%), Postives = 204/210 (97.14%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPL-KPASSSRSLKVSAEAEAQA 60
           MAMAAQATLFTPSLSTPKSTA+T+PWKQS TLSF+NSKPL KPA+SSR +KVSAEAEA A
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEA-A 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209

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BLAST of CmUC05G086070 vs. NCBI nr
Match: XP_022973649.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima] >XP_022975157.1 photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 381.3 bits (978), Expect = 5.2e-102
Identity = 196/209 (93.78%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQAA 60
           MAMAAQATLFTPSL+TPKSTA  VPWKQSPTLSFLN+KPL  ASSSR +KVSAEAEA AA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAA 60

Query: 61  PVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  --EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CmUC05G086070 vs. NCBI nr
Match: KAG7018694.1 (Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.9 bits (977), Expect = 6.8e-102
Identity = 196/210 (93.33%), Postives = 203/210 (96.67%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPL-KPASSSRSLKVSAEAEAQA 60
           MAMAAQATLFTPSLSTPKS A+T+PWKQS TLSF+NSKPL KPA+SSR +KVSAEAEA A
Sbjct: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEA-A 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209

[Close]

BLAST of CmUC05G086070 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 380.9 bits (977), Expect = 6.8e-102
Identity = 196/210 (93.33%), Postives = 203/210 (96.67%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPL-KPASSSRSLKVSAEAEAQA 60
           MAMAAQATLFTPSLSTPKSTA+T+PWKQS TLSF+NSKPL KPA+SSR +KVSAEAE  A
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAE--A 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of CmUC05G086070 vs. ExPASy Swiss-Prot
Match: P32869 (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.9e-103
Identity = 195/210 (92.86%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSAEAEAQA 60
           MAMA QATLFTPSLSTPKST I++PWKQS TLSFL SKP LK ASSSRS KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETS- 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
             VEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  --VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmUC05G086070 vs. ExPASy Swiss-Prot
Match: P12372 (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.9e-86
Identity = 173/212 (81.60%), Postives = 182/212 (85.85%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPLK-PASSSRSLKVSAEAEAQA 60
           MAMA QA+LFTP LS PKST  T PWKQS  +SF   K LK   S +R ++  AE EA A
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAE-EAPA 60

Query: 61  APVE--APAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
           A  E  APAGF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG
Sbjct: 61  ATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120

Query: 121 AAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           PGREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 PGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]

BLAST of CmUC05G086070 vs. ExPASy Swiss-Prot
Match: P29302 (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.0e-84
Identity = 167/210 (79.52%), Postives = 179/210 (85.24%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPLK-PASSSRSLKVSAEAEAQA 60
           MAMA QA+LFTP+LS PKS+A   PWKQS  L+  + K LK   S+ R ++  AE EA  
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAE-EAAT 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
              EAP GF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  KEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN G
Sbjct: 121 IMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           R+GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 RQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]

BLAST of CmUC05G086070 vs. ExPASy Swiss-Prot
Match: P12353 (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 312.8 bits (800), Expect = 3.0e-84
Identity = 166/216 (76.85%), Postives = 180/216 (83.33%), Query Frame = 0


Query: 1   MAMAAQATLFTP---SLSTPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEA 60
           MAMA QATLF+P   S + P  T +T  +KQ   ++F +    KPAS   S++ +A AE 
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS----KPASRHHSIRAAAAAEG 60

Query: 61  QAAPV----EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120
           +AA      EAP GF+PPELDP TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM
Sbjct: 61  KAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120

Query: 121 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYP 180
           PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYP
Sbjct: 121 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYP 180

Query: 181 EKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 EKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]

BLAST of CmUC05G086070 vs. ExPASy Swiss-Prot
Match: Q9SA56 (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.9e-75
Identity = 150/210 (71.43%), Postives = 166/210 (79.05%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQAAP 62
           MA QA  +F+P+++T  S        +   L   + +P   + +  +++      + AAP
Sbjct: 1   MATQAAGIFSPAITTTTSAV------KKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAP 60

Query: 63  V--EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
              EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of CmUC05G086070 vs. ExPASy TrEMBL
Match: A0A6J1ICA2 (photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111474178 PE=3 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.5e-102
Identity = 196/209 (93.78%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQAA 60
           MAMAAQATLFTPSL+TPKSTA  VPWKQSPTLSFLN+KPL  ASSSR +KVSAEAEA AA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAA 60

Query: 61  PVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  --EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmUC05G086070 vs. ExPASy TrEMBL
Match: A0A6J1GWF9 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457767 PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.3e-102
Identity = 196/210 (93.33%), Postives = 203/210 (96.67%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPL-KPASSSRSLKVSAEAEAQA 60
           MAMAAQATLFTPSLSTPKSTA+T+PWKQS TLSF+NSKPL KPA+SSR +KVSAEAE  A
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAE--A 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of CmUC05G086070 vs. ExPASy TrEMBL
Match: A0A5D3D399 (Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00340 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.4e-102
Identity = 197/210 (93.81%), Postives = 202/210 (96.19%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSAEAEAQA 60
           MAMA QATLFTPSLSTPKS+AI++PWKQSPTLSFL SKP LK ASSSRSLKVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE--- 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A VEAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AAVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CmUC05G086070 vs. ExPASy TrEMBL
Match: A0A1S3AXN9 (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.4e-102
Identity = 197/210 (93.81%), Postives = 202/210 (96.19%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSAEAEAQA 60
           MAMA QATLFTPSLSTPKS+AI++PWKQSPTLSFL SKP LK ASSSRSLKVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE--- 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A VEAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AAVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmUC05G086070 vs. ExPASy TrEMBL
Match: A0A6J1INM6 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479135 PE=3 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.3e-101
Identity = 195/210 (92.86%), Postives = 202/210 (96.19%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFLNSKPL-KPASSSRSLKVSAEAEAQA 60
           MAMAAQATLFTPSLSTPKSTA+T+PWKQS TL F+NSKPL KPA+SSR +KVSAEAE  A
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAE--A 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of CmUC05G086070 vs. TAIR 10
Match: AT1G03130.1 (photosystem I subunit D-2 )

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-76
Identity = 150/210 (71.43%), Postives = 166/210 (79.05%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQAAP 62
           MA QA  +F+P+++T  S        +   L   + +P   + +  +++      + AAP
Sbjct: 1   MATQAAGIFSPAITTTTSAV------KKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAP 60

Query: 63  V--EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
              EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of CmUC05G086070 vs. TAIR 10
Match: AT4G02770.1 (photosystem I subunit D-1 )

HSP 1 Score: 283.1 bits (723), Expect = 1.8e-76
Identity = 152/208 (73.08%), Postives = 163/208 (78.37%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQAAP 62
           MA QA  +F  +++T  ++ +      S T    +    K A  +     SA A A  A 
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPAT 60

Query: 63  VEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 120

Query: 123 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           REGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

The following BLAST results are available for this feature:

BLAST of CmUC05G086070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876164.1	8.6e-105	96.67	photosystem I reaction center subunit II, chloroplastic [Benincasa hispida]	[more]
XP_023528925.1	1.8e-102	93.81	photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022973649.1	5.2e-102	93.78	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima] ...	[more]
KAG7018694.1	6.8e-102	93.33	Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argy...	[more]
XP_022955930.1	6.8e-102	93.33	photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]	[more]

BLAST of CmUC05G086070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32869	2.9e-103	92.86	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
P12372	1.9e-86	81.60	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
P29302	1.0e-84	79.52	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
P12353	3.0e-84	76.85	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9SA56	1.9e-75	71.43	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CmUC05G086070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICA2	2.5e-102	93.78	photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A6J1GWF9	3.3e-102	93.33	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A5D3D399	7.4e-102	93.81	Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3AXN9	7.4e-102	93.81	photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A6J1INM6	1.3e-101	92.86	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3...	[more]

BLAST of CmUC05G086070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03130.1	1.4e-76	71.43	photosystem I subunit D-2	[more]
AT4G02770.1	1.8e-76	73.08	photosystem I subunit D-1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.1470.10	Photosystem I PsaD, reaction center subunit II	coord: 67..209 e-value: 4.5E-77 score: 258.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..80
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 76..207 e-value: 5.5E-68 score: 226.7
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..209
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	64234	Photosystem I subunit PsaD	coord: 74..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G086070.1	CmUC05G086070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I