CmUC05G085360 (gene) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATTTTCCAAGATCCATTTTTTGTTTCTTTAAAAATGGCAAACCCATCCGCCTTTACTTTATCCACTCCAATCACAACATCCCAACGCTTTCTAATGCCCGCCCATTTTCCTTTCTCTAGTGCTTCGCAATTCTCGCCGCCGCCCTTCTCCTCCGCCGCTCTTCATTTTTCCTACTCCGGTAACTCATTCCTCATTAGCTCTTCTACTCCGCTTTGCAAAATTTTGATTTTCGCCAGATTAAGGAATGTTTTCTAAATTTGAATTCGGGATCTGTAGCCGTTTCTGGTTCTATGTAATTGTACGATGATTGAATTTCTATGCCTTCTGTTCATCTGTCATTCGAAATTTGGTTCTTGATTCGATCCTCTGTTTGGTTGTTGAGATCATTGGAATTGATTGGGGATTGTGATTGAGTGGCGGTTGTTCATACTTCCCATTTCTGCTGCTTACTCGAATTAAGTCTTTGTTTCGTCAGTTTGTGAACGGAGAATCGGATTTCTGTTGGTACCCATGGAATGATTTGACTGGATTTGGCTTAATCTTGGAAAGCGTAAATCTCCTAGCACTATCGGCTGGATTCTTTGCTTATTTGTCATTATTCCTTTTGGAATTTACAGAATCACCAACCACTCTTTCATCTGTTTTAGAATTTTCATTTTCTTAAGAGTTAAAAGTATTTAATCGACGTGCGATCTTCCAATTTATAACATGGAATCCTTCTAGGTGATGCTACCAATATACTCCACCAAAACATTTGATAATCTTTTAGTTTTCTAGTTCAAGGACATTGCTGACCTTTTATTTTATGTTATTTTCTTCAAGTGGATGAGTTTACACAGTTAAATGGGGTTGCATATTTATCAGATAGTCTAAGAAAGCAAATTTGGTGGCTCCAATGTTCTTTGCATTGTATTTCTTAACATTTGTTTCTGATTCAACAAATTTCCAATTTCTGTTAAGATGTAGATTGGTAAATGTTGGTTTTCTTGAATTTTATCAGATCTGGGAAATGTTTCATGAAGTGGAACTAGTGAGAGATGTGGAAATCACGGCTGAAAAGGAAAAGAGAGATGCTCTCAACTTTCAGAGGTACATTGTAACATGTCTATTAGAGAACTTATTGAAGGAGAAGGCCAACAAAGACCATGGCTATTTTCTTGCTGTTACTAGCTTGAAGAGCATAGGGAAGGGAGTGGTTAAGAATGAGTCTCAATGTGTTTCATTCCCCATTACCTTTATTTGCCGAACCTTTTTGCCTCTAGAGGGGGAGATCTTACATGGAGTTGTTCGTCACATATTTCGACGTGGATTACTCTTAAAATGTGGACCGATCAAGTACGTGTTTCTTTCAGCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTGAAAATCCTGTATTCTTAAGCAACGAATTTGCAACGATTGGAAACGATGTCGTTGTACGGTTCAGTGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGTATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAACAACTCACTTGGACCTATTTCATTGTCTGACTCTGATGAGTTTGACTTGTAAATTTAGAATACAAACCACAAACTTGGGAATGTTTCACTGTAATATATTCATACACGCCTTGCTTATTTCTTCCCTTCTATATATCTTTCTGTTTGATGTTCTTGGCCATGATAATTCAAGATTCTTGTGGAATGTTAACTTGAATGTCTTGCATTAAGGAAGCCCGAGGACAGGATGGATTTAATCTTTGCAAAAACAGTATTGTTCAATTGAAATTATCTCACCACAAGGTTTGGATTTTTCAATTTGTATTCAAGATTTTAACAGGGTCGATGTTTGCAATGTTCTACTTCTAAAGTCAATTGTGTGAAGGCAAAACTGAGAGAGGGAGAGAGAAGTTCTGTAGGTTGAAGATGATGGCTTATTTCCAACCACTGCTATGGATGTCTATTCCTTGCAAATTACAATCCAATTCATTTGTTTTTGTTGTTGTTTTCATTGACTCAAATAATGATGGGTTGAACAACCTGACCAGTTGTCTAAATTTATCATATTTGCATTTCAGTCAAAATGTTTAATTATTAGTTAAAAG CATTTTCCAAGATCCATTTTTTGTTTCTTTAAAAATGGCAAACCCATCCGCCTTTACTTTATCCACTCCAATCACAACATCCCAACGCTTTCTAATGCCCGCCCATTTTCCTTTCTCTAGTGCTTCGCAATTCTCGCCGCCGCCCTTCTCCTCCGCCGCTCTTCATTTTTCCTACTCCGTTTGTGAACGGAGAATCGGATTTCTGTTGATCTGGGAAATGTTTCATGAAGTGGAACTAGTGAGAGATGTGGAAATCACGGCTGAAAAGGAAAAGAGAGATGCTCTCAACTTTCAGAGGTACATTGTAACATGTCTATTAGAGAACTTATTGAAGGAGAAGGCCAACAAAGACCATGGCTATTTTCTTGCTGTTACTAGCTTGAAGAGCATAGGGAAGGGAGTGGTTAAGAATGAGTCTCAATGTGTTTCATTCCCCATTACCTTTATTTGCCGAACCTTTTTGCCTCTAGAGGGGGAGATCTTACATGGAGTTGTTCGTCACATATTTCGACGTGGATTACTCTTAAAATGTGGACCGATCAAGTACGTGTTTCTTTCAGCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTGAAAATCCTGTATTCTTAAGCAACGAATTTGCAACGATTGGAAACGATGTCGTTGTACGGTTCAGTGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGTATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAACAACTCACTTGGACCTATTTCATTGTCTGACTCTGATGAGTTTGACTTGTAAATTTAGAATACAAACCACAAACTTGGGAATGTTTCACTGTAATATATTCATACACGCCTTGCTTATTTCTTCCCTTCTATATATCTTTCTGTTTGATGTTCTTGGCCATGATAATTCAAGATTCTTGTGGAATGTTAACTTGAATGTCTTGCATTAAGGAAGCCCGAGGACAGGATGGATTTAATCTTTGCAAAAACAGTATTGTTCAATTGAAATTATCTCACCACAAGGTTTGGATTTTTCAATTTGTATTCAAGATTTTAACAGGGTCGATGTTTGCAATGTTCTACTTCTAAAGTCAATTGTGTGAAGGCAAAACTGAGAGAGGGAGAGAGAAGTTCTGTAGGTTGAAGATGATGGCTTATTTCCAACCACTGCTATGGATGTCTATTCCTTGCAAATTACAATCCAATTCATTTGTTTTTGTTGTTGTTTTCATTGACTCAAATAATGATGGGTTGAACAACCTGACCAGTTGTCTAAATTTATCATATTTGCATTTCAGTCAAAATGTTTAATTATTAGTTAAAAG ATGGCAAACCCATCCGCCTTTACTTTATCCACTCCAATCACAACATCCCAACGCTTTCTAATGCCCGCCCATTTTCCTTTCTCTAGTGCTTCGCAATTCTCGCCGCCGCCCTTCTCCTCCGCCGCTCTTCATTTTTCCTACTCCGTTTGTGAACGGAGAATCGGATTTCTGTTGATCTGGGAAATGTTTCATGAAGTGGAACTAGTGAGAGATGTGGAAATCACGGCTGAAAAGGAAAAGAGAGATGCTCTCAACTTTCAGAGGTACATTGTAACATGTCTATTAGAGAACTTATTGAAGGAGAAGGCCAACAAAGACCATGGCTATTTTCTTGCTGTTACTAGCTTGAAGAGCATAGGGAAGGGAGTGGTTAAGAATGAGTCTCAATGTGTTTCATTCCCCATTACCTTTATTTGCCGAACCTTTTTGCCTCTAGAGGGGGAGATCTTACATGGAGTTGTTCGTCACATATTTCGACGTGGATTACTCTTAAAATGTGGACCGATCAAGTACGTGTTTCTTTCAGCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTGAAAATCCTGTATTCTTAAGCAACGAATTTGCAACGATTGGAAACGATGTCGTTGTACGGTTCAGTGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGTATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAACAACTCACTTGGACCTATTTCATTGTCTGACTCTGATGAGTTTGACTTGTAA MANPSAFTLSTPITTSQRFLMPAHFPFSSASQFSPPPFSSAALHFSYSVCERRIGFLLIWEMFHEVELVRDVEITAEKEKRDALNFQRYIVTCLLENLLKEKANKDHGYFLAVTSLKSIGKGVVKNESQCVSFPITFICRTFLPLEGEILHGVVRHIFRRGLLLKCGPIKYVFLSARKMPTYHYVGGENPVFLSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPISLSDSDEFDL Homology
BLAST of CmUC05G085360 vs. NCBI nr
Match: XP_038877102.1 (DNA-directed RNA polymerase V subunit 7-like isoform X1 [Benincasa hispida]) HSP 1 Score: 383.6 bits (984), Expect = 1.3e-102 Identity = 197/233 (84.55%), Postives = 202/233 (86.70%), Query Frame = 0
BLAST of CmUC05G085360 vs. NCBI nr
Match: XP_038877103.1 (DNA-directed RNA polymerase V subunit 7-like isoform X2 [Benincasa hispida]) HSP 1 Score: 375.2 bits (962), Expect = 4.5e-100 Identity = 182/193 (94.30%), Postives = 187/193 (96.89%), Query Frame = 0
BLAST of CmUC05G085360 vs. NCBI nr
Match: XP_004134101.1 (DNA-directed RNA polymerase V subunit 7 [Cucumis sativus] >XP_004134102.1 DNA-directed RNA polymerase V subunit 7 [Cucumis sativus] >KGN56913.1 hypothetical protein Csa_009882 [Cucumis sativus]) HSP 1 Score: 367.1 bits (941), Expect = 1.2e-97 Identity = 178/190 (93.68%), Postives = 184/190 (96.84%), Query Frame = 0
BLAST of CmUC05G085360 vs. NCBI nr
Match: XP_008438585.1 (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo] >XP_008438586.1 PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo] >KAA0049303.1 DNA-directed RNA polymerase V subunit 7-like [Cucumis melo var. makuwa] >TYK17255.1 DNA-directed RNA polymerase V subunit 7-like [Cucumis melo var. makuwa]) HSP 1 Score: 367.1 bits (941), Expect = 1.2e-97 Identity = 179/190 (94.21%), Postives = 183/190 (96.32%), Query Frame = 0
BLAST of CmUC05G085360 vs. NCBI nr
Match: KAG6582352.1 (DNA-directed RNA polymerase subunit 7-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 359.0 bits (920), Expect = 3.3e-95 Identity = 176/195 (90.26%), Postives = 182/195 (93.33%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy Swiss-Prot
Match: Q6NML5 (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB7L PE=2 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 7.4e-37 Identity = 86/202 (42.57%), Postives = 125/202 (61.88%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy Swiss-Prot
Match: A6QRA1 (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPE7 PE=1 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 2.0e-34 Identity = 76/181 (41.99%), Postives = 116/181 (64.09%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy Swiss-Prot
Match: Q8LE42 (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPD7 PE=1 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 3.9e-30 Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 3.7e-12 Identity = 43/155 (27.74%), Postives = 88/155 (56.77%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.4e-11 Identity = 41/155 (26.45%), Postives = 87/155 (56.13%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy TrEMBL
Match: A0A1S3AWE2 (DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo OX=3656 GN=LOC103483648 PE=4 SV=1) HSP 1 Score: 367.1 bits (941), Expect = 5.9e-98 Identity = 179/190 (94.21%), Postives = 183/190 (96.32%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy TrEMBL
Match: A0A5A7U0C3 (DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001070 PE=4 SV=1) HSP 1 Score: 367.1 bits (941), Expect = 5.9e-98 Identity = 179/190 (94.21%), Postives = 183/190 (96.32%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy TrEMBL
Match: A0A0A0L5A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G143540 PE=4 SV=1) HSP 1 Score: 367.1 bits (941), Expect = 5.9e-98 Identity = 178/190 (93.68%), Postives = 184/190 (96.84%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy TrEMBL
Match: A0A6J1EFY9 (DNA-directed RNA polymerase V subunit 7-like OS=Cucurbita moschata OX=3662 GN=LOC111432163 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 7.5e-93 Identity = 173/192 (90.10%), Postives = 179/192 (93.23%), Query Frame = 0
BLAST of CmUC05G085360 vs. ExPASy TrEMBL
Match: A0A6J1IQI7 (DNA-directed RNA polymerase V subunit 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479602 PE=4 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 1.9e-91 Identity = 171/192 (89.06%), Postives = 178/192 (92.71%), Query Frame = 0
BLAST of CmUC05G085360 vs. TAIR 10
Match: AT4G14520.1 (DNA-directed RNA polymerase II-related ) HSP 1 Score: 155.6 bits (392), Expect = 5.2e-38 Identity = 86/202 (42.57%), Postives = 125/202 (61.88%), Query Frame = 0
BLAST of CmUC05G085360 vs. TAIR 10
Match: AT4G14520.2 (DNA-directed RNA polymerase II-related ) HSP 1 Score: 155.6 bits (392), Expect = 5.2e-38 Identity = 86/202 (42.57%), Postives = 125/202 (61.88%), Query Frame = 0
BLAST of CmUC05G085360 vs. TAIR 10
Match: AT4G14520.3 (DNA-directed RNA polymerase II-related ) HSP 1 Score: 155.6 bits (392), Expect = 5.2e-38 Identity = 86/202 (42.57%), Postives = 125/202 (61.88%), Query Frame = 0
BLAST of CmUC05G085360 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain ) HSP 1 Score: 147.5 bits (371), Expect = 1.4e-35 Identity = 76/181 (41.99%), Postives = 116/181 (64.09%), Query Frame = 0
BLAST of CmUC05G085360 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain ) HSP 1 Score: 133.3 bits (334), Expect = 2.8e-31 Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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