CmUC05G084670 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G084670
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	50S ribosomal protein L28
Location	CmU531Chr05: 3666772 .. 3668263 (+)
RNA-Seq Expression	CmUC05G084670
Synteny	CmUC05G084670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGCTTATCCCCTTCTCCTTCATAAACTCAACAAGGCGCTTCCCCAACTTACAACTCTCCTCACTAACAATGGCAGCTTCCGTAGTCTTCGGCTTCACGCCGGCCACTTCTTCCGGTGTAATTGCACCCTCCTCAACCAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAATCACTCGCTAATCTCCACCTCTCCCATTTCTACTGCTCCTCTCACACCTGCCCTTCAACCTGTTGCTCGTAATATCCCCCTTCTTCTCAACTCTTGCTTAATATATTTTCATTTTTTGGGCTCTACTTGTATATGGCTGAAGCATTTTCTATTTGAGTTAGGTTTCTAAATCACCCATGTTCTGATTCCAATTTGGGATATCTACAATTTCTATTTGAATTGGGAACCATCTCAAACTTGGTGCTTTCATTATTTTTTATTTCAGGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGTTTGTCAACTAAGGCTTTGAAAACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGATTTGGTAATTCATGACACTTTAATTTTACTCTTTTAAAAATTTGAGCAAGATTTGTCTAATTACACAATCATGTTGTATCCTGCTGTTTTTGCCTATTATTGTTTTTAGTAGTCTGTTTATTTTTAATGGTCACAATATTCTTGTATTTTTGCTTTCCTCCGTTTGGCAATGAAGCTGAAATCTCATCCCTTTTCCTTTCTGGGTTTCATGAATAATACAATTTCTTAGAAGTCCAGCTAGAGTGATCTTACAAATTTGTTGCTAAAGCCTAAAATTCTTCATCAATTAGCTTATCACTTGTAGGTAACTCTAAAGCCTAAAATTTAATGCTGTAGTCAGAGAGTTGAATATATTTAATAATGTCCAAAGATTTGTTCATCTTCCCCTTACCATTGAGAACAATTCATCAACTCAGAAGGGGCTGCAGTGTGCTGTGGTAGATGAAGCAATTTGGAAGCCCGTGGGTTAGTTTCTTTTGTTGTCTTGTCACAAGAGAAAGATCCTTCCTTTCTAGTAATGTGCAAAACTAGTCTATCAAGATTACCAACAGCATTAGGAAGCTATGAGAAGCCAAGTATTTTAGCCCATGTGAAGAAGAAAGGGAAAAGTTGGTTCCTCGTAGCCTCTAGAATCGTCTATATGGCTGAAGAGAAGGATCGAGCAAATTGCTGGACTTTAGCTTAAGGAGTTTGATAATTTAATAGTTGGAGAGTTTTTGAGCAGCATTTGTATCCTTTCTAATTTGTGTAAAAGGCTATTTGAAATGACTTCCT

mRNA sequence

AGAAGCTTATCCCCTTCTCCTTCATAAACTCAACAAGGCGCTTCCCCAACTTACAACTCTCCTCACTAACAATGGCAGCTTCCGTAGTCTTCGGCTTCACGCCGGCCACTTCTTCCGGTGTAATTGCACCCTCCTCAACCAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAATCACTCGCTAATCTCCACCTCTCCCATTTCTACTGCTCCTCTCACACCTGCCCTTCAACCTGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGTTTGTCAACTAAGGCTTTGAAAACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGATTTGAAGGGGCTGCAGTGTGCTGTGGTAGATGAAGCAATTTGGAAGCCCGTGGGTTAGTTTCTTTTGTTGTCTTGTCACAAGAGAAAGATCCTTCCTTTCTAGTAATGTGCAAAACTAGTCTATCAAGATTACCAACAGCATTAGGAAGCTATGAGAAGCCAAGTATTTTAGCCCATGTGAAGAAGAAAGGGAAAAGTTGGTTCCTCGTAGCCTCTAGAATCGTCTATATGGCTGAAGAGAAGGATCGAGCAAATTGCTGGACTTTAGCTTAAGGAGTTTGATAATTTAATAGTTGGAGAGTTTTTGAGCAGCATTTGTATCCTTTCTAATTTGTGTAAAAGGCTATTTGAAATGACTTCCT

Coding sequence (CDS)

ATGGCAGCTTCCGTAGTCTTCGGCTTCACGCCGGCCACTTCTTCCGGTGTAATTGCACCCTCCTCAACCAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAATCACTCGCTAATCTCCACCTCTCCCATTTCTACTGCTCCTCTCACACCTGCCCTTCAACCTGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGTTTGTCAACTAAGGCTTTGAAAACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGA

Protein sequence

MAASVVFGFTPATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Homology

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BLAST of CmUC05G084670 vs. NCBI nr
Match: XP_008438484.1 (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] >KAA0049228.1 50S ribosomal protein L28 [Cucumis melo var. makuwa] >TYK17330.1 50S ribosomal protein L28 [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 4.8e-65
Identity = 136/150 (90.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MAASVVFGFTP-ATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPI 60
           MAASVVFGFTP ATS+GV+A SSTKLHFRTK NS+LGFL SQL+GIKISSNHSLIS SPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  STAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APL P+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmUC05G084670 vs. NCBI nr
Match: XP_038885053.1 (50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 139/149 (93.29%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MAASVVFGFTPATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPIS 60
           MAA VV GFTPATSSGV+A SSTKL F TK NSELGFLTSQLAGIKISSNHSLIS SPIS
Sbjct: 1   MAAFVVLGFTPATSSGVMAASSTKLQFTTKPNSELGFLTSQLAGIKISSNHSLISPSPIS 60

Query: 61  TAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120
            APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL
Sbjct: 61  -APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120

Query: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           RLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CmUC05G084670 vs. NCBI nr
Match: XP_004134049.1 (50S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.1 hypothetical protein Csa_010318 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 4.0e-64
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MAASVVFGFTP-ATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPI 60
           MAASVVFGFTP AT SGV+  SSTKLHFRTK NS+LGFLTSQL+GI+ISSNHSLIS + I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  STAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           STAPL P+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmUC05G084670 vs. NCBI nr
Match: KAG7018806.1 (50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.5 bits (641), Expect = 4.5e-63
Identity = 134/149 (89.93%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MAASVVFGFTPATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPIS 60
           MA S V GFTP  SSGV+A SS+KLHFR+KAN ELGFL+SQL+GIKISSNHSLIS SPIS
Sbjct: 39  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 98

Query: 61  TAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120
            APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL
Sbjct: 99  -APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 158

Query: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           RLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 159 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 186

[Close]

BLAST of CmUC05G084670 vs. NCBI nr
Match: XP_022924246.1 (50S ribosomal protein L28, chloroplastic [Cucurbita moschata] >KAG6582404.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251.5 bits (641), Expect = 4.5e-63
Identity = 134/149 (89.93%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MAASVVFGFTPATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPIS 60
           MA S V GFTP  SSGV+A SS+KLHFR+KAN ELGFL+SQL+GIKISSNHSLIS SPIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 60

Query: 61  TAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120
            APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL
Sbjct: 61  -APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120

Query: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           RLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CmUC05G084670 vs. ExPASy Swiss-Prot
Match: P30956 (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.7e-45
Identity = 90/122 (73.77%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 28  RTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKN 87
           ++K +SEL F+TSQL+G+KISS H + S++P+S  P  P+LQPVARR+CPFTGKK+N+ N
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLS-VPFKPSLQPVARRICPFTGKKSNRAN 90

Query: 88  LVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLR 147
            VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGIDL 
Sbjct: 91  KVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLS 150

Query: 148 KE 150
           K+
Sbjct: 151 KK 151

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BLAST of CmUC05G084670 vs. ExPASy Swiss-Prot
Match: P82245 (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-44
Identity = 97/118 (82.20%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 33  SELGFLTSQLAGIKISSNHSL-ISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSF 92
           SELGFLTSQL+GI+IS +    I + PIS APL P+LQPVARR+CPFTGKK+NK N VS 
Sbjct: 32  SELGFLTSQLSGIQISPSPLFPIISKPIS-APLKPSLQPVARRICPFTGKKSNKANRVSH 91

Query: 93  SNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           SNHKTK+LQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 92  SNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CmUC05G084670 vs. ExPASy Swiss-Prot
Match: O22795 (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL28 PE=2 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 6.5e-41
Identity = 95/132 (71.97%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 19  APSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQP-VARRVCP 78
           A S TK    T  + ELGFLTSQL+G++IS   S +      + P  P +QP VARR+CP
Sbjct: 17  AKSMTK---STVTSKELGFLTSQLSGLRISYTPSDVINR--ISLPSFPGIQPIVARRICP 76

Query: 79  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 138
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 77  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 136

Query: 139 VAKKAGIDLRKE 150
           VAKKAGIDLRK+
Sbjct: 137 VAKKAGIDLRKK 143

[Close]

BLAST of CmUC05G084670 vs. ExPASy Swiss-Prot
Match: Q8DG62 (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 74  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 133
           RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 134 GLDAVAKKAGIDLRK 149
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]

BLAST of CmUC05G084670 vs. ExPASy Swiss-Prot
Match: B8HUV7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.3e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 74  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 133
           RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 134 GLDAVAKKAGIDLRK 149
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]

BLAST of CmUC05G084670 vs. ExPASy TrEMBL
Match: A0A5A7U1W6 (50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001850 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 136/150 (90.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MAASVVFGFTP-ATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPI 60
           MAASVVFGFTP ATS+GV+A SSTKLHFRTK NS+LGFL SQL+GIKISSNHSLIS SPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  STAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APL P+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmUC05G084670 vs. ExPASy TrEMBL
Match: A0A1S3AWK5 (50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 136/150 (90.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MAASVVFGFTP-ATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPI 60
           MAASVVFGFTP ATS+GV+A SSTKLHFRTK NS+LGFL SQL+GIKISSNHSLIS SPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  STAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APL P+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmUC05G084670 vs. ExPASy TrEMBL
Match: A0A0A0L501 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.0e-64
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MAASVVFGFTP-ATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPI 60
           MAASVVFGFTP AT SGV+  SSTKLHFRTK NS+LGFLTSQL+GI+ISSNHSLIS + I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  STAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           STAPL P+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmUC05G084670 vs. ExPASy TrEMBL
Match: A0A6J1IT28 (50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479118 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 134/149 (89.93%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MAASVVFGFTPATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPIS 60
           MA S V GFTP +SSGV+A SS+KLHFRTK N ELGFL+SQL+GIKISSNHSLIS SPIS
Sbjct: 1   MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS 60

Query: 61  TAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120
            APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL
Sbjct: 61  -APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120

Query: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           RLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CmUC05G084670 vs. ExPASy TrEMBL
Match: A0A6J1E916 (50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431774 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 134/149 (89.93%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MAASVVFGFTPATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPIS 60
           MA S V GFTP  SSGV+A SS+KLHFR+KAN ELGFL+SQL+GIKISSNHSLIS SPIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 60

Query: 61  TAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120
            APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL
Sbjct: 61  -APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120

Query: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           RLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CmUC05G084670 vs. TAIR 10
Match: AT2G33450.1 (Ribosomal L28 family )

HSP 1 Score: 168.3 bits (425), Expect = 4.6e-42
Identity = 95/132 (71.97%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 19  APSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQP-VARRVCP 78
           A S TK    T  + ELGFLTSQL+G++IS   S +      + P  P +QP VARR+CP
Sbjct: 17  AKSMTK---STVTSKELGFLTSQLSGLRISYTPSDVINR--ISLPSFPGIQPIVARRICP 76

Query: 79  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 138
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 77  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 136

Query: 139 VAKKAGIDLRKE 150
           VAKKAGIDLRK+
Sbjct: 137 VAKKAGIDLRKK 143

The following BLAST results are available for this feature:

BLAST of CmUC05G084670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438484.1	4.8e-65	90.67	PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] >KAA0049228.1...	[more]
XP_038885053.1	1.8e-64	93.29	50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S...	[more]
XP_004134049.1	4.0e-64	90.00	50S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.1 hypotheti...	[more]
KAG7018806.1	4.5e-63	89.93	50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022924246.1	4.5e-63	89.93	50S ribosomal protein L28, chloroplastic [Cucurbita moschata] >KAG6582404.1 50S ...	[more]

BLAST of CmUC05G084670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30956	9.7e-45	73.77	50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P...	[more]
P82245	1.7e-44	82.20	50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P...	[more]
O22795	6.5e-41	71.97	50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
Q8DG62	3.7e-20	64.00	50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972...	[more]
B8HUV7	6.3e-20	64.00	50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of CmUC05G084670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1W6	2.3e-65	90.67	50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AWK5	2.3e-65	90.67	50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567...	[more]
A0A0A0L501	2.0e-64	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1	[more]
A0A6J1IT28	2.2e-63	89.93	50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1E916	2.2e-63	89.93	50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CmUC05G084670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33450.1	4.6e-42	71.97	Ribosomal L28 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 74..132 e-value: 1.2E-18 score: 67.0
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 25..149
IPR001383	Ribosomal protein L28	TIGRFAM	TIGR00009	TIGR00009	coord: 74..129 e-value: 2.6E-16 score: 57.8
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 71..147 score: 13.90849
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	2.30.170.40	Ribosomal protein L28/L24	coord: 73..149 e-value: 1.8E-28 score: 100.4
None	No IPR available	PANTHER	PTHR13528:SF6	50S RIBOSOMAL PROTEIN L28, CHLOROPLASTIC	coord: 25..149
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 74..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G084670.1	CmUC05G084670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome