CmUC05G080590 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G080590
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Late cornified envelope protein 1E
Location	CmU531Chr05: 417489 .. 418062 (+)
RNA-Seq Expression	CmUC05G080590
Synteny	CmUC05G080590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGCCCCATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCGTAACACACGCATCCCCATTCCACTTGTGTCCTTTTAATTACATGCCTATTTTCTTAAAACTTACATTTTGTAATTACTTCAGTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTCTTGTGCTGAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATATATGATCTTAATCTAATACTGTATGTGTATCTCGCTTTTCCAAATTATATATCAACAAACTACATGACTCTGTGTATTTTATATAATCAACGCCTTTTCGATTACTTC

mRNA sequence

TCGCCCCATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTCTTGTGCTGAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATATATGATCTTAATCTAATACTGTATGTGTATCTCGCTTTTCCAAATTATATATCAACAAACTACATGACTCTGTGTATTTTATATAATCAACGCCTTTTCGATTACTTC

Coding sequence (CDS)

ATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTCTTGTGCTGA

Protein sequence

MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKDQITQRRSSGPGFPSPRPAPRRYKLLKDVLC

Homology

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BLAST of CmUC05G080590 vs. NCBI nr
Match: XP_022924678.1 (uncharacterized protein LOC111432109 [Cucurbita moschata])

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 80/117 (68.38%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLN   PLCCLCGDVGFPAKLFRC +CS RFQHSYCSNFYCG +S DPI ++CDWCR++
Sbjct: 1   MDLN--RPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCG-ESADPITRLCDWCRTE 60

Query: 61  QITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
             TRRP+   A  N G TS K     DQIT+ +SS  G PSPRPAPRRYKLLKDV+C
Sbjct: 61  HTTRRPSPAAA--NNGATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of CmUC05G080590 vs. NCBI nr
Match: XP_023526855.1 (uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.5 bits (415), Expect = 5.4e-37
Identity = 80/117 (68.38%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLN   PLCCLCGDVGFPAKLFRC +CS RFQHSYCSNFYCG +S DPI ++CDWCR++
Sbjct: 1   MDLN--RPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCG-ESADPITRLCDWCRTE 60

Query: 61  QITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
             TRRP    A  N G TS K     DQIT+ +SS  G PSPRPAPRRYKLLKDV+C
Sbjct: 61  HTTRRPGPAAA--NNGATSQKPHKITDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of CmUC05G080590 vs. NCBI nr
Match: XP_004134287.1 (uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical protein Csa_010459 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLN  PPLCCLCGDVGFPAKLFRC +CS RFQHSYCSN+YCG +SGD  +++CDWCRS+
Sbjct: 1   MDLN--PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCG-ESGDATIRVCDWCRSE 60

Query: 61  QITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           Q T RPA  +      TTS K ++IT+RRSS  G PSPRPAPRRYKLLKDV+C
Sbjct: 61  QRTCRPAFAS------TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of CmUC05G080590 vs. NCBI nr
Match: XP_008437789.1 (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLN  PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+
Sbjct: 41  MDLN--PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSG-ESGDAIIRVCDWCRSE 100

Query: 61  QITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           Q TRRPA+        TTS KD +IT+ RSS  G PSPRPAPRRYKLLKDV+C
Sbjct: 101 QRTRRPAAFAT-----TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of CmUC05G080590 vs. NCBI nr
Match: KAA0048831.1 (uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK20783.1 uncharacterized protein E5676_scaffold291G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLN  PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+
Sbjct: 1   MDLN--PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSG-ESGDAIIRVCDWCRSE 60

Query: 61  QITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           Q TRRPA+        TTS KD +IT+ RSS  G PSPRPAPRRYKLLKDV+C
Sbjct: 61  QRTRRPAAFAT-----TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match: A0A6J1ED69 (uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC111432109 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.0e-37
Identity = 80/117 (68.38%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLN   PLCCLCGDVGFPAKLFRC +CS RFQHSYCSNFYCG +S DPI ++CDWCR++
Sbjct: 1   MDLN--RPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCG-ESADPITRLCDWCRTE 60

Query: 61  QITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
             TRRP+   A  N G TS K     DQIT+ +SS  G PSPRPAPRRYKLLKDV+C
Sbjct: 61  HTTRRPSPAAA--NNGATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match: A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.9e-37
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLN  PPLCCLCGDVGFPAKLFRC +CS RFQHSYCSN+YCG +SGD  +++CDWCRS+
Sbjct: 1   MDLN--PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCG-ESGDATIRVCDWCRSE 60

Query: 61  QITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           Q T RPA  +      TTS K ++IT+RRSS  G PSPRPAPRRYKLLKDV+C
Sbjct: 61  QRTCRPAFAS------TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match: A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLN  PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+
Sbjct: 1   MDLN--PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSG-ESGDAIIRVCDWCRSE 60

Query: 61  QITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           Q TRRPA+        TTS KD +IT+ RSS  G PSPRPAPRRYKLLKDV+C
Sbjct: 61  QRTRRPAAFAT-----TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match: A0A1S3AVF1 (uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLN  PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+
Sbjct: 41  MDLN--PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSG-ESGDAIIRVCDWCRSE 100

Query: 61  QITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           Q TRRPA+        TTS KD +IT+ RSS  G PSPRPAPRRYKLLKDV+C
Sbjct: 101 QRTRRPAAFAT-----TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match: A0A6J1IAU2 (uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.3e-24
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 5   PPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITR 64
           P PP+CCLCGDVGFPA LFRC  CS RFQHSYCSN+Y   +S + I ++CDWCR ++   
Sbjct: 14  PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY--GESAEAI-EVCDWCRCERRCG 73

Query: 65  RPASTTATNNTGTTSHKDQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           R  S        +     Q  + R+SG G PSPR APRRYKLLKDV+C
Sbjct: 74  RRGSAARKFGVASQKSSGQDKRERNSG-GMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of CmUC05G080590 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.1 bits (240), Expect = 9.8e-21
Identity = 54/125 (43.20%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPAS 68
           +CC+CGDVGF  KLF C  C  RFQHSYCS++Y   +  DPI +ICDWC+ +  +R  A 
Sbjct: 8   VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY--KEQADPI-KICDWCQCEAKSRTGAK 67

Query: 69  TTATNNTGTTSHK------------DQITQRRSSG---------PGFPSPRPAPRRYKLL 113
                 +   S++             +I Q  SS           G PSPRPA RRYKLL
Sbjct: 68  HGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLL 127

[Close]

BLAST of CmUC05G080590 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-18
Identity = 52/131 (39.69%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ-------- 68
           +CC+CGDVGF  KLF C  C  RFQHSYCSN+Y   Q  +P  +ICDWCRS         
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYY--GQFAEP-TEICDWCRSDDRKLSNVA 63

Query: 69  ----QITRRPASTTATNN--------------TGTTSHKDQITQR-RSSGPGFPSPRPAP 113
                 +++P+S+    N                  +  DQ+ +     G G  SP+ A 
Sbjct: 64  RHGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTAT 123

The following BLAST results are available for this feature:

BLAST of CmUC05G080590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924678.1	4.1e-37	68.38	uncharacterized protein LOC111432109 [Cucurbita moschata]	[more]
XP_023526855.1	5.4e-37	68.38	uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo]	[more]
XP_004134287.1	2.0e-36	69.91	uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical ...	[more]
XP_008437789.1	4.6e-36	69.91	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
KAA0048831.1	4.6e-36	69.91	uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of CmUC05G080590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC05G080590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED69	2.0e-37	68.38	uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC1114321...	[more]
A0A0A0L5P1	9.9e-37	69.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1	[more]
A0A5D3DB67	2.2e-36	69.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AVF1	2.2e-36	69.91	uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=...	[more]
A0A6J1IAU2	3.3e-24	55.56	uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmUC05G080590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60520.1	9.8e-21	43.20	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G02070.1	2.7e-18	39.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..92
None	No IPR available	PANTHER	PTHR33779:SF11	OS02G0658200 PROTEIN	coord: 9..81
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 77..112
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 9..81
None	No IPR available	PANTHER	PTHR33779:SF11	OS02G0658200 PROTEIN	coord: 77..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G080590.1	CmUC05G080590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding