CmUC05G080390 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G080390
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Reverse transcriptase
Location	CmU531Chr05: 183869 .. 184411 (+)
RNA-Seq Expression	CmUC05G080390
Synteny	CmUC05G080390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAGTTCTGCTCTTCAGTGAACCAGTGGTTCTCCATTCTTCTTGGCAGTTTTTTTTTCGGTTTTGGCACGCCCCTAGTTCAATCAGGAGATAAAGTTCTGATCAAACTGCGCCAGTTTCAATTTCGGGTACAAAGAGACCAATGTCTTGTGAGGAAATATGAAGGACCCCTAGAAGTGATTGAGAAGGTTGGGAAAACCTCTTATCGTGTTCATTTATTCTCATTGATGAAGATTCATCCCGTCATATATGTGAGTAACTTGAAGCCTTACCATCCTAATCCTGATGATGAGCAACACAATATTATGACTCCCTCTCCCGTCACGATGAAGAACACAACAGAAAAAGAGGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCGTCACGATGAAGAACACAACAGAAAAAGAAGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCTGAAGGAATTCTTGGTGAAGTGGAAAGGCTTCCCAGACGAAGAAATTAG

mRNA sequence

ATGGTTCAGTTCTGCTCTTCAGTGAACCAGTGGTTCTCCATTCTTCTTGGCAGTTTTTTTTTCGGTTTTGGCACGCCCCTAGTTCAATCAGGAGATAAAGTTCTGATCAAACTGCGCCAGTTTCAATTTCGGGTACAAAGAGACCAATGTCTTGTGAGGAAATATGAAGGACCCCTAGAAGTGATTGAGAAGGTTGGGAAAACCTCTTATCGTGTTCATTTATTCTCATTGATGAAGATTCATCCCGTCATATATGTGAGTAACTTGAAGCCTTACCATCCTAATCCTGATGATGAGCAACACAATATTATGACTCCCTCTCCCGTCACGATGAAGAACACAACAGAAAAAGAGGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCGTCACGATGAAGAACACAACAGAAAAAGAAGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCTGAAGGAATTCTTGGTGAAGTGGAAAGGCTTCCCAGACGAAGAAATTAG

Coding sequence (CDS)

ATGGTTCAGTTCTGCTCTTCAGTGAACCAGTGGTTCTCCATTCTTCTTGGCAGTTTTTTTTTCGGTTTTGGCACGCCCCTAGTTCAATCAGGAGATAAAGTTCTGATCAAACTGCGCCAGTTTCAATTTCGGGTACAAAGAGACCAATGTCTTGTGAGGAAATATGAAGGACCCCTAGAAGTGATTGAGAAGGTTGGGAAAACCTCTTATCGTGTTCATTTATTCTCATTGATGAAGATTCATCCCGTCATATATGTGAGTAACTTGAAGCCTTACCATCCTAATCCTGATGATGAGCAACACAATATTATGACTCCCTCTCCCGTCACGATGAAGAACACAACAGAAAAAGAGGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCGTCACGATGAAGAACACAACAGAAAAAGAAGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCTGAAGGAATTCTTGGTGAAGTGGAAAGGCTTCCCAGACGAAGAAATTAG

Protein sequence

MVQFCSSVNQWFSILLGSFFFGFGTPLVQSGDKVLIKLRQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYVSNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKRSRRDTCWKNLPRWKTKTRPEGILGEVERLPRRRN

Homology

[Close]

BLAST of CmUC05G080390 vs. NCBI nr
Match: XP_038882325.1 (uncharacterized protein LOC120073574 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-32
Identity = 78/110 (70.91%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 29  QSGDKVLIKLR--QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           Q+GDKVLIKLR  QF+FR Q+DQ LVRKYEGP+EVIEKVG+TSYRV L S MKIHPVI+V
Sbjct: 55  QAGDKVLIKLRPEQFRFRGQKDQRLVRKYEGPVEVIEKVGRTSYRVQLPSWMKIHPVIHV 114

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRD 137
           S LKPYHP+P+DEQ N++   PVTMK++ EKEV +IL  RT R+GRPRR+
Sbjct: 115 SILKPYHPDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRTRRIGRPRRE 164

[Close]

BLAST of CmUC05G080390 vs. NCBI nr
Match: XP_038885809.1 (uncharacterized protein LOC120076104 [Benincasa hispida])

HSP 1 Score: 145.2 bits (365), Expect = 5.4e-31
Identity = 76/110 (69.09%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 29  QSGDKVLIKLR--QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           Q+GDKVLIKLR  +F+FR QRDQ LVRKYEGP+EVIEKVG+TSYRV L S MKIHPVI+V
Sbjct: 47  QAGDKVLIKLRPEKFRFRGQRDQRLVRKYEGPVEVIEKVGRTSYRVQLPSWMKIHPVIHV 106

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRD 137
           S LKPYH +P+DEQ N++   PVTMK++ EKEV +IL  R  R+GRPRR+
Sbjct: 107 SILKPYHSDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRARRIGRPRRE 156

[Close]

BLAST of CmUC05G080390 vs. NCBI nr
Match: KAG7032459.1 (LRR receptor-like serine/threonine-protein kinase GSO2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-26
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 29  QSGDKVLIKLR--QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           Q+GD+VLIKLR  Q +FR ++DQ LVRKYEGP+EV++ +G TSYRV L + MKIHPVI V
Sbjct: 884 QAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKNIGATSYRVALPTWMKIHPVIRV 943

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGR 133
           SNLKPYHPNPDD+Q N++T   + +K    KE++EILA R  ++GR
Sbjct: 944 SNLKPYHPNPDDDQRNVITRLSIDLKQRDSKEIEEILAERDRKIGR 989

[Close]

BLAST of CmUC05G080390 vs. NCBI nr
Match: XP_022975161.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111474196 [Cucurbita maxima])

HSP 1 Score: 122.5 bits (306), Expect = 3.8e-24
Identity = 60/108 (55.56%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 29  QSGDKVLIKLR--QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           ++GD+VLIKLR  Q +FR Q+DQ LVRKYE P+EV++K+G TSYRV L + MK HPVI+V
Sbjct: 310 RAGDQVLIKLRPKQIRFRSQKDQRLVRKYECPVEVLKKIGATSYRVALPTWMKYHPVIHV 369

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPR 135
           SNLKPYHP+PD++Q N++    + +K    KE+++ILA R  ++GRP+
Sbjct: 370 SNLKPYHPDPDEDQLNVIPRPSIDLKQRDNKEIEKILADRVRKIGRPK 417

[Close]

BLAST of CmUC05G080390 vs. NCBI nr
Match: XP_038890146.1 (uncharacterized protein LOC120079806 [Benincasa hispida])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-23
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 40  QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYVSNLKPYHPNPDDE 99
           +FQ   +RDQ LVRKYEGP+EVIEKVGKTSYRV L S MKIHPVI+VS LKPYHP+ +DE
Sbjct: 103 EFQAGDKRDQRLVRKYEGPVEVIEKVGKTSYRVQLPSWMKIHPVIHVSILKPYHPDRNDE 162

Query: 100 QHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKRSRRD 151
           Q N++    +TMKN+TEK+V +IL  RT R+ RPRR++   E  +   +++
Sbjct: 163 QRNMLMCPLITMKNSTEKKVPQILDRRTHRITRPRREQSSWEKLKNEGKKE 213

[Close]

BLAST of CmUC05G080390 vs. ExPASy TrEMBL
Match: A0A6J1IDE6 (LOW QUALITY PROTEIN: uncharacterized protein LOC111474196 OS=Cucurbita maxima OX=3661 GN=LOC111474196 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 60/108 (55.56%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 29  QSGDKVLIKLR--QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           ++GD+VLIKLR  Q +FR Q+DQ LVRKYE P+EV++K+G TSYRV L + MK HPVI+V
Sbjct: 310 RAGDQVLIKLRPKQIRFRSQKDQRLVRKYECPVEVLKKIGATSYRVALPTWMKYHPVIHV 369

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPR 135
           SNLKPYHP+PD++Q N++    + +K    KE+++ILA R  ++GRP+
Sbjct: 370 SNLKPYHPDPDEDQLNVIPRPSIDLKQRDNKEIEKILADRVRKIGRPK 417

[Close]

BLAST of CmUC05G080390 vs. ExPASy TrEMBL
Match: A0A6J1ICH1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111474309 OS=Cucurbita maxima OX=3661 GN=LOC111474309 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-24
Identity = 59/108 (54.63%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 29  QSGDKVLIKLR--QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           ++GD+VLIKLR  Q +FR Q++Q LVRKYE P+EV++K+G TSYRV L + MK HPVI+V
Sbjct: 374 RAGDQVLIKLRPKQIRFRSQKNQRLVRKYECPVEVLKKIGATSYRVALPTWMKYHPVIHV 433

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPR 135
           SNLKPYHP+PD++Q N++    + +K    KE+++ILA R  ++GRP+
Sbjct: 434 SNLKPYHPDPDEDQLNVIPRPSIDLKQRDNKEIEKILADRVRKIGRPK 481

[Close]

BLAST of CmUC05G080390 vs. ExPASy TrEMBL
Match: A0A5A7V577 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00480 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 70/131 (53.44%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 29   QSGDKVLIKLR--QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
            ++GD+VLIKLR  Q +FR ++DQ LVRKYEGP+EV++KVG TSYRV L + MKI+PVI+V
Sbjct: 1433 RAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHV 1492

Query: 89   SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKR 148
            SNLKPYH + +D Q N++TP  + +    +K+V+EILA R  R  RP R  H  E+  K 
Sbjct: 1493 SNLKPYHQDTEDLQRNVVTPPIIDLSQKEDKDVEEILAERVRRGRRPARRIH--EYLVK- 1552

Query: 149  SRRDTCWKNLP 158
                  WKNLP
Sbjct: 1553 ------WKNLP 1554

[Close]

BLAST of CmUC05G080390 vs. ExPASy TrEMBL
Match: A0A5A7UG93 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00640 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = 0


Query: 29  QSGDKVLIKLR--QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           ++GD+VLIKLR  Q +FR ++DQ LVRKYEGP+EV++KVG TSYRV L + MKI+PVI+V
Sbjct: 462 RAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALLTWMKIYPVIHV 521

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKR 148
           SNLKPYH + +D Q NI+T   + +    +K+V+EILA R  R  RP R  H  E+  K 
Sbjct: 522 SNLKPYHQDTEDLQRNIVTRPVIDLSQKEDKDVEEILAERVRRGRRPARRIH--EYLVK- 581

Query: 149 SRRDTCWKNLP 158
                 WKNLP
Sbjct: 582 ------WKNLP 583

[Close]

BLAST of CmUC05G080390 vs. ExPASy TrEMBL
Match: A0A5A7SQA2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005090 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.5e-23
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 29   QSGDKVLIKLR--QFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
            ++GD+VLIKLR  Q +FR ++DQ LVRKYEGP+EV++KVG TSYRV L + MKI+PVI+V
Sbjct: 894  RAGDQVLIKLRSEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHV 953

Query: 89   SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKR 148
            SNLKPYH + +D Q NI+T   + +    +K+V+EILA R  R  RP R  H+       
Sbjct: 954  SNLKPYHQDTEDLQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYL----- 1013

Query: 149  SRRDTCWKNLP 158
                  WKNLP
Sbjct: 1014 ----IMWKNLP 1015

The following BLAST results are available for this feature:

BLAST of CmUC05G080390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882325.1	1.3e-32	70.91	uncharacterized protein LOC120073574 [Benincasa hispida]	[more]
XP_038885809.1	5.4e-31	69.09	uncharacterized protein LOC120076104 [Benincasa hispida]	[more]
KAG7032459.1	5.3e-26	60.38	LRR receptor-like serine/threonine-protein kinase GSO2, partial [Cucurbita argyr...	[more]
XP_022975161.1	3.8e-24	55.56	LOW QUALITY PROTEIN: uncharacterized protein LOC111474196 [Cucurbita maxima]	[more]
XP_038890146.1	1.1e-23	58.56	uncharacterized protein LOC120079806 [Benincasa hispida]	[more]

BLAST of CmUC05G080390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC05G080390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IDE6	1.8e-24	55.56	LOW QUALITY PROTEIN: uncharacterized protein LOC111474196 OS=Cucurbita maxima OX...	[more]
A0A6J1ICH1	6.9e-24	54.63	LOW QUALITY PROTEIN: uncharacterized protein LOC111474309 OS=Cucurbita maxima OX...	[more]
A0A5A7V577	1.5e-23	53.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50...	[more]
A0A5A7UG93	3.4e-23	53.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5A7SQA2	4.5e-23	51.91	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of CmUC05G080390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G080390.1	CmUC05G080390.1	mRNA