CmUC04G079990 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G079990
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionpentatricopeptide repeat-containing protein isoform X2
LocationCmU531Chr04: 26164693 .. 26164926 (+)
RNA-Seq ExpressionCmUC04G079990
SyntenyCmUC04G079990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAAAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA

mRNA sequence

ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAAAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA

Coding sequence (CDS)

ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAAAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA

Protein sequence

MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLGGVWRAGGFETRHLGGSVGDGE
Homology
BLAST of CmUC04G079990 vs. NCBI nr
Match: XP_038889591.1 (pentatricopeptide repeat-containing protein At2g34400 [Benincasa hispida])

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-04
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 1   MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLF+EMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMALVSVLG 236

BLAST of CmUC04G079990 vs. NCBI nr
Match: XP_008451433.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 9.2e-04
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 1   MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLF+EMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLG 236

BLAST of CmUC04G079990 vs. NCBI nr
Match: XP_004148338.1 (pentatricopeptide repeat-containing protein At2g34400 [Cucumis sativus] >KGN61161.1 hypothetical protein Csa_021156 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 9.2e-04
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 1   MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLF+EMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLG 236

BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A0A0LMG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060420 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-04
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 1   MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLF+EMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLG 236

BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A1S3BRJ2 (pentatricopeptide repeat-containing protein At2g34400 OS=Cucumis melo OX=3656 GN=LOC103492726 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-04
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 1   MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLF+EMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLG 236

BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A2I4HLW6 (pentatricopeptide repeat-containing protein At2g34400 isoform X1 OS=Juglans regia OX=51240 GN=LOC109019338 PE=4 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 5.8e-04
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 1   MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG 57
           M+ GY+KM Y  +AVGLF+EMME GFEPD+M LV  +G   D       + DL LG
Sbjct: 205 MLSGYSKMGYAADAVGLFREMMEVGFEPDEMTLVSVLGACKD-------LGDLSLG 253

BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A2I4HLZ4 (pentatricopeptide repeat-containing protein At2g34400 isoform X2 OS=Juglans regia OX=51240 GN=LOC109019338 PE=4 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 5.8e-04
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 1   MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG 57
           M+ GY+KM Y  +AVGLF+EMME GFEPD+M LV  +G   D       + DL LG
Sbjct: 205 MLSGYSKMGYAADAVGLFREMMEVGFEPDEMTLVSVLGACKD-------LGDLSLG 253

BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A1Q3B4U7 (PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06598 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.9e-04
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 1   MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVG 39
           M+ GY+KM + GEAVGLF+ MMEAGFEPD+M LV  +G
Sbjct: 202 MISGYSKMGFGGEAVGLFRRMMEAGFEPDEMTLVSILG 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038889591.17.1e-0463.16pentatricopeptide repeat-containing protein At2g34400 [Benincasa hispida][more]
XP_008451433.19.2e-0463.16PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Cucumis melo][more]
XP_004148338.19.2e-0463.16pentatricopeptide repeat-containing protein At2g34400 [Cucumis sativus] >KGN6116... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LMG04.5e-0463.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060420 PE=4 SV=1[more]
A0A1S3BRJ24.5e-0463.16pentatricopeptide repeat-containing protein At2g34400 OS=Cucumis melo OX=3656 GN... [more]
A0A2I4HLW65.8e-0451.79pentatricopeptide repeat-containing protein At2g34400 isoform X1 OS=Juglans regi... [more]
A0A2I4HLZ45.8e-0451.79pentatricopeptide repeat-containing protein At2g34400 isoform X2 OS=Juglans regi... [more]
A0A1Q3B4U79.9e-0465.79PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-conta... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..29
e-value: 3.1E-7
score: 28.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..28
score: 9.678885

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G079990.1CmUC04G079990.1mRNA