CmUC04G079990 (gene) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAAAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAAAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAAAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA MMLGYAKMKYVGEAVGLFKEMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLGGVWRAGGFETRHLGGSVGDGE Homology
BLAST of CmUC04G079990 vs. NCBI nr
Match: XP_038889591.1 (pentatricopeptide repeat-containing protein At2g34400 [Benincasa hispida]) HSP 1 Score: 53.9 bits (128), Expect = 7.1e-04 Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0
BLAST of CmUC04G079990 vs. NCBI nr
Match: XP_008451433.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Cucumis melo]) HSP 1 Score: 53.5 bits (127), Expect = 9.2e-04 Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0
BLAST of CmUC04G079990 vs. NCBI nr
Match: XP_004148338.1 (pentatricopeptide repeat-containing protein At2g34400 [Cucumis sativus] >KGN61161.1 hypothetical protein Csa_021156 [Cucumis sativus]) HSP 1 Score: 53.5 bits (127), Expect = 9.2e-04 Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0
BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A0A0LMG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060420 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 4.5e-04 Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0
BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A1S3BRJ2 (pentatricopeptide repeat-containing protein At2g34400 OS=Cucumis melo OX=3656 GN=LOC103492726 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 4.5e-04 Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0
BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A2I4HLW6 (pentatricopeptide repeat-containing protein At2g34400 isoform X1 OS=Juglans regia OX=51240 GN=LOC109019338 PE=4 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 5.8e-04 Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 0
BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A2I4HLZ4 (pentatricopeptide repeat-containing protein At2g34400 isoform X2 OS=Juglans regia OX=51240 GN=LOC109019338 PE=4 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 5.8e-04 Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 0
BLAST of CmUC04G079990 vs. ExPASy TrEMBL
Match: A0A1Q3B4U7 (PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06598 PE=4 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 9.9e-04 Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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