CmUC04G078940 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC04G078940
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ras GTPase-activating protein-binding protein 2-like
Location	CmU531Chr04: 25422203 .. 25422583 (-)
RNA-Seq Expression	CmUC04G078940
Synteny	CmUC04G078940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAGCTTCGTCCTCCTTAATCCAAACCCTAAAGCGCTACATCAAGAAGCCTTGGGAGATCACCGGCCCGTGTGCAGATCCAGAGTACAGATCAGCCGTCCCGAGCGCCTTAGAGTACAGGGTCTTTTGCCCCGCCACTACAAAGGAGAAAGCCATTGTCCCTACCTCCAATCCCGAGACGGTCTTCGACATTAAGTATTACACCCGCGACCAGCGTCGCAATCGCCCTCCAATTCGACGTACCATCCTCAAGAAACCTGACGTCGAGAAGATGATGAAGGAGACCAAGTTCGACCCTGCTGACTTTCCCAAAGTTTATCTCACTGCCGCGATCGAGGAGGATATAAATGCTCGTGGAGGTGGTTATCAGAAGTAA

mRNA sequence

ATGGCCAAAGCTTCGTCCTCCTTAATCCAAACCCTAAAGCGCTACATCAAGAAGCCTTGGGAGATCACCGGCCCGTGTGCAGATCCAGAGTACAGATCAGCCGTCCCGAGCGCCTTAGAGTACAGGGTCTTTTGCCCCGCCACTACAAAGGAGAAAGCCATTGTCCCTACCTCCAATCCCGAGACGGTCTTCGACATTAAGTATTACACCCGCGACCAGCGTCGCAATCGCCCTCCAATTCGACGTACCATCCTCAAGAAACCTGACGTCGAGAAGATGATGAAGGAGACCAAGTTCGACCCTGCTGACTTTCCCAAAGTTTATCTCACTGCCGCGATCGAGGAGGATATAAATGCTCGTGGAGGTGGTTATCAGAAGTAA

Coding sequence (CDS)

ATGGCCAAAGCTTCGTCCTCCTTAATCCAAACCCTAAAGCGCTACATCAAGAAGCCTTGGGAGATCACCGGCCCGTGTGCAGATCCAGAGTACAGATCAGCCGTCCCGAGCGCCTTAGAGTACAGGGTCTTTTGCCCCGCCACTACAAAGGAGAAAGCCATTGTCCCTACCTCCAATCCCGAGACGGTCTTCGACATTAAGTATTACACCCGCGACCAGCGTCGCAATCGCCCTCCAATTCGACGTACCATCCTCAAGAAACCTGACGTCGAGAAGATGATGAAGGAGACCAAGTTCGACCCTGCTGACTTTCCCAAAGTTTATCTCACTGCCGCGATCGAGGAGGATATAAATGCTCGTGGAGGTGGTTATCAGAAGTAA

Protein sequence

MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNPETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINARGGGYQK

Homology

[Close]

BLAST of CmUC04G078940 vs. NCBI nr
Match: XP_038895860.1 (uncharacterized protein LOC120084028 [Benincasa hispida])

HSP 1 Score: 252.7 bits (644), Expect = 1.7e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKASSSL QTLKRY KKPWEITGPCADPEYR AVPSALEYRVFCPATTKEKAIVPTSNP
Sbjct: 49  MAKASSSLFQTLKRYFKKPWEITGPCADPEYRLAVPSALEYRVFCPATTKEKAIVPTSNP 108

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKET+FDPADFPKVYLTAAIEEDINAR
Sbjct: 109 ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETRFDPADFPKVYLTAAIEEDINAR 168

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 169 GGGYQK 174

[Close]

BLAST of CmUC04G078940 vs. NCBI nr
Match: XP_022923781.1 (uncharacterized protein LOC111431390, partial [Cucurbita moschata])

HSP 1 Score: 250.8 bits (639), Expect = 6.4e-63
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKASSS  QTLKRYIKKPWEITGPCADPEY+ AVPSA+EYRVFCPATTKEKAIVPTSNP
Sbjct: 22  MAKASSSFFQTLKRYIKKPWEITGPCADPEYKLAVPSAIEYRVFCPATTKEKAIVPTSNP 81

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEED+NAR
Sbjct: 82  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDMNAR 141

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 142 GGGYQK 147

[Close]

BLAST of CmUC04G078940 vs. NCBI nr
Match: XP_023541320.1 (uncharacterized protein LOC111801530, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKASSSL QT+KRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTK+K IVPTSNP
Sbjct: 23  MAKASSSLFQTVKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 82

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           ETVFDIKYY+RDQRRNRPPIRRTILKKPD+E+MMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 83  ETVFDIKYYSRDQRRNRPPIRRTILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 142

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 143 GGGYQK 148

[Close]

BLAST of CmUC04G078940 vs. NCBI nr
Match: XP_008451315.2 (PREDICTED: uncharacterized protein LOC103492624, partial [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKA+SSL+QTL+RYIKKPWEITGPCADPEYRSAVPSALEYRV CPAT KEKAI+PTSNP
Sbjct: 6   MAKAASSLLQTLRRYIKKPWEITGPCADPEYRSAVPSALEYRVVCPATIKEKAIIPTSNP 65

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEED+NAR
Sbjct: 66  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDMNAR 125

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 126 GGGYQK 131

[Close]

BLAST of CmUC04G078940 vs. NCBI nr
Match: TYJ98943.1 (uncharacterized protein E5676_scaffold248G001440 [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKA+SSL+QTL+RYIKKPWEITGPCADPEYRSAVPSALEYRV CPAT KEKAI+PTSNP
Sbjct: 1   MAKAASSLLQTLRRYIKKPWEITGPCADPEYRSAVPSALEYRVVCPATIKEKAIIPTSNP 60

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEED+NAR
Sbjct: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDMNAR 120

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 121 GGGYQK 126

[Close]

BLAST of CmUC04G078940 vs. ExPASy TrEMBL
Match: A0A6J1E7N6 (uncharacterized protein LOC111431390 OS=Cucurbita moschata OX=3662 GN=LOC111431390 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.1e-63
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKASSS  QTLKRYIKKPWEITGPCADPEY+ AVPSA+EYRVFCPATTKEKAIVPTSNP
Sbjct: 22  MAKASSSFFQTLKRYIKKPWEITGPCADPEYKLAVPSAIEYRVFCPATTKEKAIVPTSNP 81

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEED+NAR
Sbjct: 82  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDMNAR 141

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 142 GGGYQK 147

[Close]

BLAST of CmUC04G078940 vs. ExPASy TrEMBL
Match: A0A5D3BI32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001440 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.9e-63
Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKA+SSL+QTL+RYIKKPWEITGPCADPEYRSAVPSALEYRV CPAT KEKAI+PTSNP
Sbjct: 1   MAKAASSLLQTLRRYIKKPWEITGPCADPEYRSAVPSALEYRVVCPATIKEKAIIPTSNP 60

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEED+NAR
Sbjct: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDMNAR 120

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 121 GGGYQK 126

[Close]

BLAST of CmUC04G078940 vs. ExPASy TrEMBL
Match: A0A1S3BR63 (uncharacterized protein LOC103492624 OS=Cucumis melo OX=3656 GN=LOC103492624 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.9e-63
Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKA+SSL+QTL+RYIKKPWEITGPCADPEYRSAVPSALEYRV CPAT KEKAI+PTSNP
Sbjct: 6   MAKAASSLLQTLRRYIKKPWEITGPCADPEYRSAVPSALEYRVVCPATIKEKAIIPTSNP 65

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEED+NAR
Sbjct: 66  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDMNAR 125

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 126 GGGYQK 131

[Close]

BLAST of CmUC04G078940 vs. ExPASy TrEMBL
Match: A0A6J1KK07 (uncharacterized protein LOC111495303 OS=Cucurbita maxima OX=3661 GN=LOC111495303 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKASSS  QTLKRYIKKPWEITGPCADPEY+ AVPSA+EYRVFCPA+TKEKAIVPTSNP
Sbjct: 1   MAKASSSFFQTLKRYIKKPWEITGPCADPEYKLAVPSAIEYRVFCPASTKEKAIVPTSNP 60

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           ETVFDIKYY+RDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 61  ETVFDIKYYSRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 121 GGGYQK 126

[Close]

BLAST of CmUC04G078940 vs. ExPASy TrEMBL
Match: A0A6J1GSY9 (uncharacterized protein LOC111456682 OS=Cucurbita moschata OX=3662 GN=LOC111456682 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 7.7e-62
Identity = 117/126 (92.86%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           MAKASSSL QTLKR+IKKPWEITGPCADPEYRSAVPSALEYRVFCPATTK+K IVPTSNP
Sbjct: 63  MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 122

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYY+RDQRRNRPPIRR ILKKPD+E+MMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 123 QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 182

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 183 GGGYQK 188

[Close]

BLAST of CmUC04G078940 vs. TAIR 10
Match: AT5G08060.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-44
Identity = 83/127 (65.35%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 1   MAKASSSLIQTLKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKEKAIVPTSNP 60
           ++ A+SSL+Q L+RYIKKPW+ITGPCA PEY  AVP A EYR+ CPAT  E+AIVP+S+P
Sbjct: 5   VSTAASSLVQNLRRYIKKPWQITGPCAHPEYLEAVPKATEYRLRCPATIDEEAIVPSSDP 64

Query: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETK-FDPADFPKVYLTAAIEEDINA 120
           ETV++I Y+ RDQRRNRPPIRR +L K +V +MM E K FD +DFPKVYLT  +EED++ 
Sbjct: 65  ETVYNIVYHGRDQRRNRPPIRRYVLTKDNVVQMMNEKKSFDVSDFPKVYLTTTVEEDLDT 124

Query: 121 RGGGYQK 127
           RGGGY+K
Sbjct: 125 RGGGYEK 131

The following BLAST results are available for this feature:

BLAST of CmUC04G078940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895860.1	1.7e-63	96.83	uncharacterized protein LOC120084028 [Benincasa hispida]	[more]
XP_022923781.1	6.4e-63	95.24	uncharacterized protein LOC111431390, partial [Cucurbita moschata]	[more]
XP_023541320.1	1.1e-62	94.44	uncharacterized protein LOC111801530, partial [Cucurbita pepo subsp. pepo]	[more]
XP_008451315.2	1.4e-62	94.44	PREDICTED: uncharacterized protein LOC103492624, partial [Cucumis melo]	[more]
TYJ98943.1	1.4e-62	94.44	uncharacterized protein E5676_scaffold248G001440 [Cucumis melo var. makuwa]	[more]

BLAST of CmUC04G078940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC04G078940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E7N6	3.1e-63	95.24	uncharacterized protein LOC111431390 OS=Cucurbita moschata OX=3662 GN=LOC1114313...	[more]
A0A5D3BI32	6.9e-63	94.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BR63	6.9e-63	94.44	uncharacterized protein LOC103492624 OS=Cucumis melo OX=3656 GN=LOC103492624 PE=...	[more]
A0A6J1KK07	1.2e-62	94.44	uncharacterized protein LOC111495303 OS=Cucurbita maxima OX=3661 GN=LOC111495303...	[more]
A0A6J1GSY9	7.7e-62	92.86	uncharacterized protein LOC111456682 OS=Cucurbita moschata OX=3662 GN=LOC1114566...	[more]

BLAST of CmUC04G078940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08060.1	1.4e-44	65.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36391	FURRY	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC04G078940.1	CmUC04G078940.1	mRNA