CmUC04G073000 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G073000
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrotransposon protein
LocationCmU531Chr04: 18379374 .. 18379643 (-)
RNA-Seq ExpressionCmUC04G073000
SyntenyCmUC04G073000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAAAGGTTTCGACCGTCTCAAGAGGGTACACTTCTGTCTGGATTGATGTGGATTAAACAGGAAGGAATGTACGAGGAGTATAGGAAGAAGGTTGAGTCATATGCGACTCCGATTCCGAAAGCGGCAAAAAACGTGTTACAGAAGGTGTTTATTAATGGGTTGTTGCGGGAAATTAAGGCAGAGGTGAAGTGCAGTAATCCGGTGGCCCTTGATGAGTGCATGGTGCAAGCCCAAGCTGTGAGCAATCAAAATCTGGCATTGTAG

mRNA sequence

ATGTTTGAAAGGTTTCGACCGTCTCAAGAGGGTACACTTCTGTCTGGATTGATGTGGATTAAACAGGAAGGAATGTACGAGGAGTATAGGAAGAAGGTTGAGTCATATGCGACTCCGATTCCGAAAGCGGCAAAAAACGTGTTACAGAAGGTGTTTATTAATGGGTTGTTGCGGGAAATTAAGGCAGAGGTGAAGTGCAGTAATCCGGTGGCCCTTGATGAGTGCATGGTGCAAGCCCAAGCTGTGAGCAATCAAAATCTGGCATTGTAG

Coding sequence (CDS)

ATGTTTGAAAGGTTTCGACCGTCTCAAGAGGGTACACTTCTGTCTGGATTGATGTGGATTAAACAGGAAGGAATGTACGAGGAGTATAGGAAGAAGGTTGAGTCATATGCGACTCCGATTCCGAAAGCGGCAAAAAACGTGTTACAGAAGGTGTTTATTAATGGGTTGTTGCGGGAAATTAAGGCAGAGGTGAAGTGCAGTAATCCGGTGGCCCTTGATGAGTGCATGGTGCAAGCCCAAGCTGTGAGCAATCAAAATCTGGCATTGTAG

Protein sequence

MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREIKAEVKCSNPVALDECMVQAQAVSNQNLAL
Homology
[Close]
BLAST of CmUC04G073000 vs. NCBI nr
Match: XP_038898276.1 (uncharacterized protein LOC120085983 isoform X1 [Benincasa hispida] >XP_038898277.1 uncharacterized protein LOC120085983 isoform X2 [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1  MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
          MF+ +RP  EG+L + L+ I+QEG Y EY KK  +Y+TP+P  A+ VL+  F+NGL   +
Sbjct: 1  MFKYYRPIGEGSLGARLLRIRQEGTYAEYVKKFVTYSTPLPDLAEEVLRDAFVNGLEPTL 60

Query: 61 KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
          +AEV    P  L+ECM +AQ VS++N+AL
Sbjct: 61 RAEVISRKPTTLEECMYEAQLVSDRNVAL 89

[Close]
BLAST of CmUC04G073000 vs. NCBI nr
Match: KAA0040609.1 (DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1   MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
           MFE F+   EG+L + L+ IKQ+G Y +Y KK   Y+ P+P+ A++VL   F+ GL   +
Sbjct: 103 MFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGLETNL 162

Query: 61  KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
           +AEVK  +PV L+ECM +AQ VS+++LA+
Sbjct: 163 QAEVKSRHPVTLEECMREAQMVSDRDLAI 191

[Close]
BLAST of CmUC04G073000 vs. NCBI nr
Match: KAA0062448.1 (disease resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1  MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
          MFE F+   EG+L + L+ IKQ+G Y +Y KK   Y+ P+P+ A++VL   F+ GL   +
Sbjct: 1  MFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGLETNL 60

Query: 61 KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
          +AEVK  +PV L+ECM +AQ VS+++LA+
Sbjct: 61 QAEVKSRHPVTLEECMREAQMVSDRDLAI 89

[Close]
BLAST of CmUC04G073000 vs. NCBI nr
Match: TYK27437.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1   MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
           MFE F+   EG+L + L+ IKQ+G Y +Y KK   Y+ P+P+ A++VL   F+ GL   +
Sbjct: 152 MFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGLETNL 211

Query: 61  KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
           +AEVK  +PV L+ECM +AQ VS+++LA+
Sbjct: 212 QAEVKSRHPVTLEECMREAQMVSDRDLAI 240

[Close]
BLAST of CmUC04G073000 vs. NCBI nr
Match: TYK05651.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1   MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
           MFE F+   EG+L + L+ IKQ+G Y +Y KK   Y+ P+P+ A++VL   F+ GL   +
Sbjct: 103 MFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGLETNL 162

Query: 61  KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
           +AEVK  +PV L+ECM +AQ VS+++LA+
Sbjct: 163 QAEVKSRHPVTLEECMREAQMVSDRDLAI 191

[Close]
BLAST of CmUC04G073000 vs. ExPASy TrEMBL
Match: A0A5D3DUJ0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001340 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1   MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
           MFE F+   EG+L + L+ IKQ+G Y +Y KK   Y+ P+P+ A++VL   F+ GL   +
Sbjct: 152 MFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGLETNL 211

Query: 61  KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
           +AEVK  +PV L+ECM +AQ VS+++LA+
Sbjct: 212 QAEVKSRHPVTLEECMREAQMVSDRDLAI 240

[Close]
BLAST of CmUC04G073000 vs. ExPASy TrEMBL
Match: A0A5A7V4D8 (Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00260 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1  MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
          MFE F+   EG+L + L+ IKQ+G Y +Y KK   Y+ P+P+ A++VL   F+ GL   +
Sbjct: 1  MFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGLETNL 60

Query: 61 KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
          +AEVK  +PV L+ECM +AQ VS+++LA+
Sbjct: 61 QAEVKSRHPVTLEECMREAQMVSDRDLAI 89

[Close]
BLAST of CmUC04G073000 vs. ExPASy TrEMBL
Match: A0A5A7TH70 (DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001860 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1   MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
           MFE F+   EG+L + L+ IKQ+G Y +Y KK   Y+ P+P+ A++VL   F+ GL   +
Sbjct: 103 MFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGLETNL 162

Query: 61  KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
           +AEVK  +PV L+ECM +AQ VS+++LA+
Sbjct: 163 QAEVKSRHPVTLEECMREAQMVSDRDLAI 191

[Close]
BLAST of CmUC04G073000 vs. ExPASy TrEMBL
Match: A0A5D3C142 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001130 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1   MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
           MFE F+   EG+L + L+ IKQ+G Y +Y KK   Y+ P+P+ A++VL   F+ GL   +
Sbjct: 103 MFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGLETNL 162

Query: 61  KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
           +AEVK  +PV L+ECM +AQ VS+++LA+
Sbjct: 163 QAEVKSRHPVTLEECMREAQMVSDRDLAI 191

[Close]
BLAST of CmUC04G073000 vs. ExPASy TrEMBL
Match: A0A5A7T3B8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00740 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.8e-12
Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 0 

Query: 1   MFERFRPSQEGTLLSGLMWIKQEGMYEEYRKKVESYATPIPKAAKNVLQKVFINGLLREI 60
           MFE F+ S EG+L + L+ I+Q+G+Y +Y KK   Y+ P+P+ A++VL   FI GL   +
Sbjct: 152 MFEHFKASGEGSLGARLIRIRQDGLYADYLKKFLEYSAPLPEMAESVLIDAFITGLETNL 211

Query: 61  KAEVKCSNPVALDECMVQAQAVSNQNLAL 90
           +AEV   +P+AL++CM +AQ VS+++ A+
Sbjct: 212 QAEVISRHPMALEDCMREAQMVSDRDYAI 240

The following BLAST results are available for this feature:
BLAST of CmUC04G073000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038898276.11.1e-1348.31uncharacterized protein LOC120085983 isoform X1 [Benincasa hispida] >XP_03889827... [more]
KAA0040609.11.3e-1246.07DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa][more]
KAA0062448.11.3e-1246.07disease resistance protein [Cucumis melo var. makuwa][more]
TYK27437.11.3e-1246.07Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05651.11.3e-1246.07Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
BLAST of CmUC04G073000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC04G073000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DUJ06.1e-1346.07Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7V4D86.1e-1346.07Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5A7TH706.1e-1346.07DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3C1426.1e-1346.07Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7T3B88.8e-1243.82Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CmUC04G073000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G073000.1CmUC04G073000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0006259 DNA metabolic process
biological_process GO:1901576 organic substance biosynthetic process
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0005488 binding
molecular_function GO:0016740 transferase activity