CmUC04G071040 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G071040
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr04: 12798258 .. 12798554 (-)
RNA-Seq ExpressionCmUC04G071040
SyntenyCmUC04G071040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTGTCAGTTGAAAGTGCTCTCTTCTCTACTCCTAGACATAGGAGAGAGGCTCACTCTTCATCCATAGTATCCTCTGCATCTTATGCATCTTCTGTCTCCTCTCTTGGTTTCAGGGAGCCTGTGAGCAGGAGTTCCCCCCCGAAAGTGGCTTTGACGGAGGGAAGTGGGCTTCATTCAATGGAATGCTTTGTTGGTTCAGCTCAAGGGGTCCGGTTTTTCGGTTTAGTGTGGAGGGAGGCGCTCTTTGTTGACCTTTCAGGAGACATGTTGCAATGTGAAGTGGCAAGATAA

mRNA sequence

ATGCTTTTGTCAGTTGAAAGTGCTCTCTTCTCTACTCCTAGACATAGGAGAGAGGCTCACTCTTCATCCATAGTATCCTCTGCATCTTATGCATCTTCTGTCTCCTCTCTTGGTTTCAGGGAGCCTGTGAGCAGGAGTTCCCCCCCGAAAGTGGCTTTGACGGAGGGAAGTGGGCTTCATTCAATGGAATGCTTTGTTGGTTCAGCTCAAGGGGTCCGGTTTTTCGGTTTAGTGTGGAGGGAGGCGCTCTTTGTTGACCTTTCAGGAGACATGTTGCAATGTGAAGTGGCAAGATAA

Coding sequence (CDS)

ATGCTTTTGTCAGTTGAAAGTGCTCTCTTCTCTACTCCTAGACATAGGAGAGAGGCTCACTCTTCATCCATAGTATCCTCTGCATCTTATGCATCTTCTGTCTCCTCTCTTGGTTTCAGGGAGCCTGTGAGCAGGAGTTCCCCCCCGAAAGTGGCTTTGACGGAGGGAAGTGGGCTTCATTCAATGGAATGCTTTGTTGGTTCAGCTCAAGGGGTCCGGTTTTTCGGTTTAGTGTGGAGGGAGGCGCTCTTTGTTGACCTTTCAGGAGACATGTTGCAATGTGAAGTGGCAAGATAA

Protein sequence

MLLSVESALFSTPRHRREAHSSSIVSSASYASSVSSLGFREPVSRSSPPKVALTEGSGLHSMECFVGSAQGVRFFGLVWREALFVDLSGDMLQCEVAR
Homology
[Close]
BLAST of CmUC04G071040 vs. NCBI nr
Match: RXH70831.1 (hypothetical protein DVH24_015453 [Malus domestica])

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-08
Identity = 41/50 (82.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 3  LSVESALFSTPRHRREAHSSSIVSSASYASSVSSLGFREPVSRSSPPKVA 53
          LSVE ALFS    R EAHS SIVSSASYASSVSSLGFREPVS+SSPPK A
Sbjct: 18 LSVEGALFS----RIEAHSESIVSSASYASSVSSLGFREPVSKSSPPKAA 63

[Close]
BLAST of CmUC04G071040 vs. ExPASy TrEMBL
Match: A0A498HNU1 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_015453 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 41/50 (82.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 3  LSVESALFSTPRHRREAHSSSIVSSASYASSVSSLGFREPVSRSSPPKVA 53
          LSVE ALFS    R EAHS SIVSSASYASSVSSLGFREPVS+SSPPK A
Sbjct: 18 LSVEGALFS----RIEAHSESIVSSASYASSVSSLGFREPVSKSSPPKAA 63

The following BLAST results are available for this feature:
BLAST of CmUC04G071040 vs. NCBI nr
Match NameE-valueIdentityDescription
RXH70831.17.8e-0882.00hypothetical protein DVH24_015453 [Malus domestica][more]
BLAST of CmUC04G071040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC04G071040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A498HNU13.8e-0882.00Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_015453 PE=4 SV=1[more]
BLAST of CmUC04G071040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G071040.1CmUC04G071040.1mRNA