CmUC04G068050 (gene) Watermelon (USVL531) v1

Overview
NameCmUC04G068050
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr04: 636602 .. 636973 (+)
RNA-Seq ExpressionCmUC04G068050
SyntenyCmUC04G068050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGTTTTCATGTTGTGTTTGCGCATATAGTTGATTCCAACATATCATTGTGTTTTGGATTTGGAGCAGACCATCTAATCGGTCCTTTAGGCATGCAATTTAGAAAGGTTGAGGCAGGGGTTGGTGCCCTTGCACCTATTCCACTAACATCAAAAGTAGTAAACCCGTCAGAACTTGGAGGAAGGGAAATTGATGACTCAGGTACTTCGACAATAGATTCTCTAAAAGTAGGAACTATAGCTTCCAAAGTTGCTGGAGCAGGCACTGGTACTAAATCGAGCATGATTCTAGAAGTTGCCATGAGCGTGGATGGAGAAGACAAAGCAAGGAGAAAGAAGAATGTTGTGATAAATAAAGTATCATATTGA

mRNA sequence

ATGTTTTGTTTTCATGTTGTGTTTGCGCATATAGTTGATTCCAACATATCATTGTGTTTTGGATTTGGAGCAGACCATCTAATCGGTCCTTTAGGCATGCAATTTAGAAAGGTTGAGGCAGGGGTTGGTGCCCTTGCACCTATTCCACTAACATCAAAAGTAGTAAACCCGTCAGAACTTGGAGGAAGGGAAATTGATGACTCAGGTACTTCGACAATAGATTCTCTAAAAGTAGGAACTATAGCTTCCAAAGTTGCTGGAGCAGGCACTGGTACTAAATCGAGCATGATTCTAGAAGTTGCCATGAGCGTGGATGGAGAAGACAAAGCAAGGAGAAAGAAGAATGTTGTGATAAATAAAGTATCATATTGA

Coding sequence (CDS)

ATGTTTTGTTTTCATGTTGTGTTTGCGCATATAGTTGATTCCAACATATCATTGTGTTTTGGATTTGGAGCAGACCATCTAATCGGTCCTTTAGGCATGCAATTTAGAAAGGTTGAGGCAGGGGTTGGTGCCCTTGCACCTATTCCACTAACATCAAAAGTAGTAAACCCGTCAGAACTTGGAGGAAGGGAAATTGATGACTCAGGTACTTCGACAATAGATTCTCTAAAAGTAGGAACTATAGCTTCCAAAGTTGCTGGAGCAGGCACTGGTACTAAATCGAGCATGATTCTAGAAGTTGCCATGAGCGTGGATGGAGAAGACAAAGCAAGGAGAAAGAAGAATGTTGTGATAAATAAAGTATCATATTGA

Protein sequence

MFCFHVVFAHIVDSNISLCFGFGADHLIGPLGMQFRKVEAGVGALAPIPLTSKVVNPSELGGREIDDSGTSTIDSLKVGTIASKVAGAGTGTKSSMILEVAMSVDGEDKARRKKNVVINKVSY
Homology
BLAST of CmUC04G068050 vs. NCBI nr
Match: KAE8649712.1 (hypothetical protein Csa_012861, partial [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-19
Identity = 65/102 (63.73%), Postives = 75/102 (73.53%), Query Frame = 0

Query: 18  LCFGFGADHLIGPLGMQFRKVEAGVGALAPIPLTSKVVNPSELGGREI--DDSGTSTIDS 77
           LC G GADH IGPLG+Q    +AG GALAPIPL SK++N SE+GGREI  DDSGTS IDS
Sbjct: 2   LCLGLGADHAIGPLGLQSNN-DAGNGALAPIPLGSKLINSSEVGGREIDDDDSGTSAIDS 61

Query: 78  LKVGTI-ASKVAGAGTGTKSSMILEVAMSVDGEDKARRKKNV 117
           LK+  + +S+V G     KSSM L VAM +DGED A RKKNV
Sbjct: 62  LKLRMVDSSRVVGG--CAKSSMPLVVAMILDGEDMAMRKKNV 100

BLAST of CmUC04G068050 vs. NCBI nr
Match: KAG6581979.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 0

Query: 30  PLGMQFRKVEAGVGALAPIPLTSKVVNPSELGGREIDDSGTST----------------- 89
           P G  F +VE G+GALAP  L S+V  PSE+GG +IDD GTST                 
Sbjct: 10  PKGSGF-EVEEGIGALAPTLLGSEVAKPSEVGGIQIDDLGTSTDVVGAFVVVNGALEGTK 69

Query: 90  -------------IDSLKVGTIASKVAGAGTGTKSSMILEVAMSVDGEDKARRKK 115
                        +D+L+VG +AS V  A   T+SSM LEVA S + ED  +RKK
Sbjct: 70  LDPFNKKGWRSSAMDALEVGIVASNVVRA--CTESSMALEVATSEEEEDTVKRKK 121

BLAST of CmUC04G068050 vs. NCBI nr
Match: KAE8649705.1 (hypothetical protein Csa_011947, partial [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 45  LAPIPLTSKVVNPSELGGREI--DDSGTSTIDSLKVGTI-ASKVAGAGTGTKSSMILEVA 104
           L P     K++N SE+GGREI  DDSGTS IDSLK+  + +S+V G     KSSM L VA
Sbjct: 8   LHPFHWDQKLINSSEVGGREIDDDDSGTSAIDSLKLRMVDSSRVVGG--CAKSSMPLVVA 67

Query: 105 MSVDGEDKARRKKN 116
           M ++GED A RKKN
Sbjct: 68  MILNGEDMAMRKKN 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649712.13.3e-1963.73hypothetical protein Csa_012861, partial [Cucumis sativus][more]
KAG6581979.13.2e-0641.74OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita ar... [more]
KAE8649705.11.2e-0555.41hypothetical protein Csa_011947, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC04G068050.1CmUC04G068050.1mRNA