CmUC03G060900 (gene) Watermelon (USVL531) v1

Overview
NameCmUC03G060900
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCmU531Chr03: 21156019 .. 21159351 (+)
RNA-Seq ExpressionCmUC03G060900
SyntenyCmUC03G060900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATGGCCAGTGGAAGAAGCACCAGTGGACAGCGATCCCAAAACATAAACCAAAACAATGGATGGGGTACTCAGTTCAATGAGCAGTGTGGAGGATTCAATTTGAATGCAAACAGGGGGCAAGGAAATGGAAGAGGACAAGGTGGTAATTGTCCAATCTGTCAAGTCTGTGGCAAAATGGGGCACACAGCTTTTGTTTGTTATCACAGGTATGAAAAGGAATTTGTCCCCAATAATAGTAACAACAATACCAAAGGAACAAATGGAGGAAACAACTCCACCTCAATCAACGGTGGCAAAAATGCTCCAACAGCTATGATGGCTACACAGAACAACAATCCTTTTATGACTAATACTGATGGTGTTCTTGATTCAAGCTGGTATGTAGACAATGGTGCTTCCAACAATGTCACAACAGATTACAGCAACCTCAACAATCCAATGGAGTATAAAGGTAATGAAATGGTAACAATAAGTAATGGAGAACAATTACAAATAAATTTTGTTGGTAGCACTGTTCTGTCAAGTGGAAATTCCTTACTCAATCTTAAAAATATATTATATGTGTCTAATATTGCCAAGTATCTGATTACTGTGTCCAAGCTTGCTCAAGATAATCATGTTTACATTGAATTTCATGATAATTGTTGCTTTGTAAAGGACTAGGGGGTCGAGTAATTTCGAAGGGAGTTCTTAAGGATGGGCTATATCAACTGGAAGACACCGCTGCTATCAAGAATCCTGAAGTTTTTGAAGAGTCAAAGACCGGTGTGAACTTATATAAAGATAGTTTATTAGCACTGAATTTGTCTAATGTTCAATTTAATAGTGTTGTTTCAAAACATATCTGGCACCGTCGCCTAGGTCATCCATCATCTAGTGTTTTTGAATTCATAGTCAAGAATCGTGGTTTGTCTGTTAAAGATAATGAAAAATCTGAATTTTGCTCATCCTGTCAATTGGGTAAGTCTCACTCCCTCCCCTTCCCAATTTCTAACTCCCGAGCGTCAAAACCACTTGAATTGGTCCATTCGGATGTTTGAGGCCTCGCACCTATGCTATCAACAGAGGGGTTTCAATATTACATCTTATTTATGGATGATTTCAGTAGGTTTGTACGGCTCTATCCACTGCGGCAAAAGAGTGATGCTCTCACAACATTTAAACATTTTTTAAGCTTGATACAAAATTAGTTTAATTCTGGAATTAAAATAACATGAATAGACAATGGTGGTGAGTGTTGCAAAATTCAGCAACTTTGCTCTCATTTGGGTATTCAGACACAAATGTCTTGCCCTCATACGTTAGAACAAAATGGTCGGGTTGAGCGGAAACATGGACATGTTGTTGGCATGGGCCTTACTCTCATGGCCCAGATCTTTATACCATTACAATTTTGGTGGGATGCTTTTGCCACGGCAGCACAGTTGATCAATGGCCTGCCAACTCCAATTCTAAAAGGTAAGTCTCCAATGGAGGTGCTATTAAATAAGAAATTAAATATTAACAACTTATTTGTGTTTGGTTGTGAATTTTTTCTGAACACTCGTCCATATCAGCCACACAAATTTAGCTTCCACTCCGAGAGATGTGTTTATTTGGGTCCAAGCCCTTCTCACAAAGGGTACAAATGCTTGAGTAGCAGTGGGCGGGTTTACATCACATGACACGTCAAGTTCAATGAGGTTGAATTTCTCTTCTCAACCTCTTCCTCCTAACTTAACAAGACAACCCAACCCAAAGACCTAGCCCACAACCCAGCCCAACAATCAACCTAGCAGTTTGATCACTCACTTTCTTACCACACCCAACTCAAAAATACAAATCGACCAAACATACCTCCCCAATATCCTTCTACCACCCCTTCCTTAAACCCATCTTCGACAGCCCACACCATTAGCCCACCTTCACATCCGTCTTCACCCCATAATCAACTTGAGCCCATCATCTCCGACACGCTTAATCCATCCAATCCCTCTCATTCTCCCAACTCAGAAAGCCCAACTCACACTCCAGCCCAAAATGATCCAAACCCTCCCTCCCCTTTGAATATCCAGTCGGATCCTCCACCATACTCTCCTGTTGCTTCAGTGCCTTCCCCATCTATCCCAAACCCTAACCCCACCCCTCAACCGACTCACCCGATGATCACAAGGGGAAAAGCTGGCATTTTTAAACCAAAAGTTTGGCTATCAAATGTTTCCTATGACTAGACCACAACTGAACTGACTCGAGTAACTGATGCTCTAACCACACCCTAGTGGAAATCTGCCATGGATATGAACATGCAGCTCTTATGAAGAATAACACCTGGTCTCTCATTCCTCCACAATGTGGTCAAAACATGGTTGGTAACTAGTGGATATTCAGGATAAAGCGAAATGTCGATGGTACTATTCAAAGGTACAAAGGTTGCCTCGTTGCAAAGGGGTTTCATTAGAGTTCTAGCATCGGCTTCTTCGAAACGTTCAACCCGGTCATCAAAGCGTCGACTATTCGGATTGTACTTAGCTTAGCTATCTCTCAACAATGGATCATAAGGCAGCTGGACTTCAACAATGCCTTCTTAAATGGCAGGTTGGACGAAATTGTTTATATGACTCAGCCACCTGGATATATAGATCCTGATCATCCCAACCATGTTTGCCGCCTAAATAAAGCCCTATATGGCCTCAAACAGGCTCCAAGAGTGTGGAGAAACACACTAAAGTCGACCTTGCAGTCGTGGGGCTTCATAAACTCAAGGTCAGATTCCTCCTTGTTTATATTGCGAATAGGTCAATCCATCATTCTTTTGCTGGTGTATGTTGACAATGTTATTGTGACTAGAAATGATGGTGACTTGATTTCAAAGTTAATTATCTCCCTTGACTCGAACTTCACTCTAAAAGATTTAGGAACGTTAAGATATTTCCTCAGTATTCAACTTCAGTATATGGAATCTGGGGTTTTGATGCATCAATCGAAGTATGTCGATGATCTATTGTTTAAGCTTCAAATGAGTAATGTTAAATCTGCTCCTCACTGTGTGTCATTGGCAAAAATCTATCTATTCACGAAGGTACTCCACTGGAAAATCCTTTTCTATATAGGAGCACAATTGGGGCGCTGCAATATCTAACCTATACACAGCCTGATATAGCATATATAGTCAATCACCTGAGCCAGTTCCTTTGAGCCCTGACAGATATCCATTGGCAAGCAGTAAAACAAGTATTACGGTATATCAATGGAACAAAGCATTATGGTCTTGTTCTGCAACCAAGTTTGGATACTCAAGTAACAGCATATTCTGATGCTGACTGGGCATCCAATATAGACGACTGTTGA

mRNA sequence

ATGAACATGGCCAGTGGAAGAAGCACCAGTGGACAGCGATCCCAAAACATAAACCAAAACAATGGATGGGGTACTCAGTTCAATGAGCAGTGTGGAGGATTCAATTTGAATGCAAACAGGGGGCAAGGAAATGGAAGAGGACAAGGTGGTAATTGTCCAATCTGTCAAGTCTGTGGCAAAATGGGGCACACAGCTTTTGTTTGTTATCACAGGTATGAAAAGGAATTTGTCCCCAATAATAGTAACAACAATACCAAAGGAACAAATGGAGGAAACAACTCCACCTCAATCAACGGTGGCAAAAATGCTCCAACAGCTATGATGGCTACACAGAACAACAATCCTTTTATGACTAATACTGATGGTGTTCTTGATTCAAGCTGGTATGTAGACAATGGTGCTTCCAACAATGTCACAACAGATTACAGCAACCTCAACAATCCAATGGAGTATAAAGGACTAGGGGGTCGAGTAATTTCGAAGGGAGTTCTTAAGGATGGGCTATATCAACTGGAAGACACCGCTGCTATCAAGAATCCTGAAGTTTTTGAAGAGTCAAAGACCGGTGTGAACTTATATAAAGATAGTTTATTAGCACTGAATTTGTCTAATGTTCAATTTAATAGTGTTGTTTCAAAACATATCTGGCACCGTCGCCTAGGTCATCCATCATCTAGTGTTTTTGAATTCATAGTCAAGAATCGTGACAATGGTGGTGAGTGTTGCAAAATTCAGCAACTTTGCTCTCATTTGGGTATTCAGACACAAATGTCTTGCCCTCATACGTTAGAACAAAATGGTCGGGTTGAGCGGAAACATGGACATGTTGTTGGCATGGGCCTTACTCTCATGGCCCAGATCTTTATACCATTACAATTTTGGTGGGATGCTTTTGCCACGGCAGCACAGTTGATCAATGGCCTGCCAACTCCAATTCTAAAAGCCCACACCATTAGCCCACCTTCACATCCGTCTTCACCCCATAATCAACTTGAGCCCATCATCTCCGACACGCTTAATCCATCCAATCCCTCTCATTCTCCCAACTCAGAAAGCCCAACTCACACTCCAGCCCAAAATGATCCAAACCCTCCCTCCCCTTTGAATATCCAGTCGGATCCTCCACCATACTCTCCTGTTGCTTCAGTGCCTTCCCCATCTATCCCAAACCCTAACCCCACCCCTCAACCGACTCACCCGATGATCACAAGGGGAAAAGCTGGCATTTTTAAACCAAAAAGTTCTAGCATCGGCTTCTTCGAAACGTTCAACCCGGTCATCAAAGCGTCGACTATTCGGATTGTACTTAGCTTAGCTATCTCTCAACAATGGATCATAAGGCAGCTGGACTTCAACAATGCCTTCTTAAATGGCAGGTTGGACGAAATTGTTTATATGACTCAGCCACCTGGATATATAGATCCTGATCATCCCAACCATGTTTGCCGCCTAAATAAAGCCCTATATGGCCTCAAACAGGCTCCAAGAGTGTGGAGAAACACACTAAAGTCGACCTTGCAGTCGTGGGGCTTCATAAACTCAAGGTCAGATTCCTCCTTGTTTATATTGCGAATAGGTCAATCCATCATTCTTTTGCTGGTGTATGTTGACAATGTTATTGTGACTAGAAATGATGGTGACTTGATTTCAAAGTTAATTATCTCCCTTGACTCGAACTTCACTCTAAAAGATTTAGGAACGTTAAGATATTTCCTCAGTATTCAACTTCAGTATATGGAATCTGGGGTTTTGATGCATCAATCGAAGTATGTCGATGATCTATTGTTTAAGCTTCAAATGAGTAATGTTAAATCTGCTCCTCACTATATCCATTGGCAAGCAGTAAAACAAGTATTACGGTATATCAATGGAACAAAGCATTATGGTCTTGTTCTGCAACCAAGTTTGGATACTCAAGTAACAGCATATTCTGATGCTGACTGGGCATCCAATATAGACGACTGTTGA

Coding sequence (CDS)

ATGAACATGGCCAGTGGAAGAAGCACCAGTGGACAGCGATCCCAAAACATAAACCAAAACAATGGATGGGGTACTCAGTTCAATGAGCAGTGTGGAGGATTCAATTTGAATGCAAACAGGGGGCAAGGAAATGGAAGAGGACAAGGTGGTAATTGTCCAATCTGTCAAGTCTGTGGCAAAATGGGGCACACAGCTTTTGTTTGTTATCACAGGTATGAAAAGGAATTTGTCCCCAATAATAGTAACAACAATACCAAAGGAACAAATGGAGGAAACAACTCCACCTCAATCAACGGTGGCAAAAATGCTCCAACAGCTATGATGGCTACACAGAACAACAATCCTTTTATGACTAATACTGATGGTGTTCTTGATTCAAGCTGGTATGTAGACAATGGTGCTTCCAACAATGTCACAACAGATTACAGCAACCTCAACAATCCAATGGAGTATAAAGGACTAGGGGGTCGAGTAATTTCGAAGGGAGTTCTTAAGGATGGGCTATATCAACTGGAAGACACCGCTGCTATCAAGAATCCTGAAGTTTTTGAAGAGTCAAAGACCGGTGTGAACTTATATAAAGATAGTTTATTAGCACTGAATTTGTCTAATGTTCAATTTAATAGTGTTGTTTCAAAACATATCTGGCACCGTCGCCTAGGTCATCCATCATCTAGTGTTTTTGAATTCATAGTCAAGAATCGTGACAATGGTGGTGAGTGTTGCAAAATTCAGCAACTTTGCTCTCATTTGGGTATTCAGACACAAATGTCTTGCCCTCATACGTTAGAACAAAATGGTCGGGTTGAGCGGAAACATGGACATGTTGTTGGCATGGGCCTTACTCTCATGGCCCAGATCTTTATACCATTACAATTTTGGTGGGATGCTTTTGCCACGGCAGCACAGTTGATCAATGGCCTGCCAACTCCAATTCTAAAAGCCCACACCATTAGCCCACCTTCACATCCGTCTTCACCCCATAATCAACTTGAGCCCATCATCTCCGACACGCTTAATCCATCCAATCCCTCTCATTCTCCCAACTCAGAAAGCCCAACTCACACTCCAGCCCAAAATGATCCAAACCCTCCCTCCCCTTTGAATATCCAGTCGGATCCTCCACCATACTCTCCTGTTGCTTCAGTGCCTTCCCCATCTATCCCAAACCCTAACCCCACCCCTCAACCGACTCACCCGATGATCACAAGGGGAAAAGCTGGCATTTTTAAACCAAAAAGTTCTAGCATCGGCTTCTTCGAAACGTTCAACCCGGTCATCAAAGCGTCGACTATTCGGATTGTACTTAGCTTAGCTATCTCTCAACAATGGATCATAAGGCAGCTGGACTTCAACAATGCCTTCTTAAATGGCAGGTTGGACGAAATTGTTTATATGACTCAGCCACCTGGATATATAGATCCTGATCATCCCAACCATGTTTGCCGCCTAAATAAAGCCCTATATGGCCTCAAACAGGCTCCAAGAGTGTGGAGAAACACACTAAAGTCGACCTTGCAGTCGTGGGGCTTCATAAACTCAAGGTCAGATTCCTCCTTGTTTATATTGCGAATAGGTCAATCCATCATTCTTTTGCTGGTGTATGTTGACAATGTTATTGTGACTAGAAATGATGGTGACTTGATTTCAAAGTTAATTATCTCCCTTGACTCGAACTTCACTCTAAAAGATTTAGGAACGTTAAGATATTTCCTCAGTATTCAACTTCAGTATATGGAATCTGGGGTTTTGATGCATCAATCGAAGTATGTCGATGATCTATTGTTTAAGCTTCAAATGAGTAATGTTAAATCTGCTCCTCACTATATCCATTGGCAAGCAGTAAAACAAGTATTACGGTATATCAATGGAACAAAGCATTATGGTCTTGTTCTGCAACCAAGTTTGGATACTCAAGTAACAGCATATTCTGATGCTGACTGGGCATCCAATATAGACGACTGTTGA

Protein sequence

MNMASGRSTSGQRSQNINQNNGWGTQFNEQCGGFNLNANRGQGNGRGQGGNCPICQVCGKMGHTAFVCYHRYEKEFVPNNSNNNTKGTNGGNNSTSINGGKNAPTAMMATQNNNPFMTNTDGVLDSSWYVDNGASNNVTTDYSNLNNPMEYKGLGGRVISKGVLKDGLYQLEDTAAIKNPEVFEESKTGVNLYKDSLLALNLSNVQFNSVVSKHIWHRRLGHPSSSVFEFIVKNRDNGGECCKIQQLCSHLGIQTQMSCPHTLEQNGRVERKHGHVVGMGLTLMAQIFIPLQFWWDAFATAAQLINGLPTPILKAHTISPPSHPSSPHNQLEPIISDTLNPSNPSHSPNSESPTHTPAQNDPNPPSPLNIQSDPPPYSPVASVPSPSIPNPNPTPQPTHPMITRGKAGIFKPKSSSIGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQPPGYIDPDHPNHVCRLNKALYGLKQAPRVWRNTLKSTLQSWGFINSRSDSSLFILRIGQSIILLLVYVDNVIVTRNDGDLISKLIISLDSNFTLKDLGTLRYFLSIQLQYMESGVLMHQSKYVDDLLFKLQMSNVKSAPHYIHWQAVKQVLRYINGTKHYGLVLQPSLDTQVTAYSDADWASNIDDC
Homology
BLAST of CmUC03G060900 vs. NCBI nr
Match: RVW52695.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 303.5 bits (776), Expect = 4.3e-78
Identity = 272/901 (30.19%), Postives = 380/901 (42.18%), Query Frame = 0

Query: 23   WGTQFNEQCGGFNLNANRGQGN----------GRGQGGNC-------------PICQVCG 82
            + +  N + GG   N  RGQ +          GRG+GG               P CQ+CG
Sbjct: 237  YASSTNSRGGGRRYNGGRGQNHTPNISNYTYRGRGRGGRYGQNGRHNSNSSEKPQCQLCG 296

Query: 83   KMGHTAFVCYHRYEKEFVPNNSNNNTKGTNGGNNSTSINGGKNAPTAMMATQNNNPFMTN 142
            K GHT  +CYH ++  +  ++ ++NT  +N GN         N+  AM+A+ NN      
Sbjct: 297  KFGHTVQICYHIFDISY-QSSQSSNTSPSNAGN--------PNSIPAMVASSNN------ 356

Query: 143  TDGVLDSSWYVDNGASNNVTTDYSNLNNPMEYKGLGGRVISKG----VLKDGLYQ-LEDT 202
               + D +WY+D+GAS+++T    NL +   Y G     I  G    +   G ++ L D+
Sbjct: 357  ---LADDTWYLDSGASHHLTQSVGNLTSSSPYTGTDKVTIGNGKHLSISNTGSHRLLFDS 416

Query: 203  AAIKNPEVFEESKTGVN--------------------------LYKDSLLA--------- 262
             +    +VF       N                          L+   +LA         
Sbjct: 417  RSFHLKKVFHVPFISANLISVAKFCSDNNALIEFRSNSFFVKDLHTKKVLAQGKLENGLY 476

Query: 263  ----LNLSNVQF-----NSVVSKH----------IWHRRLGHPSSSV------------- 322
                LN   V F     +S    H          +WH RLGH S+ +             
Sbjct: 477  RFPVLNSKKVAFVGATNSSTFYSHNSSIFDNKVKLWHHRLGHASTDILAKSHRLPTHLSL 536

Query: 323  ---------------------------------------------------------FEF 382
                                                                     F+ 
Sbjct: 537  SCASKPLELVHTDLWGPASVKSTSGARYFILFLDDYSRYTWFYPLQTKDQAIPAFKKFKL 596

Query: 383  IVKNR----------DNGGECCKIQQLCSHLGIQTQMSCPHTLEQNGRVERKHGHVVGMG 442
             V+N+          DNGGE    +      GI  + SCP+   QNGRVERKH HVV  G
Sbjct: 597  QVENQFDAKIKCLQSDNGGEFRSFKTFLQQTGIFHRFSCPYNSAQNGRVERKHRHVVETG 656

Query: 443  LTLMAQIFIPLQFWWDAFATAAQLINGLPTP----ILKAHTISPPSHPSSPHNQLEP-II 502
            L L+A   +P++FW   F T   LIN +P+     + K H +SP    S+  + L P II
Sbjct: 657  LALLAHASLPMEFWQYVFQTTTFLINRMPSKGQFLLAKTHPLSPTKDTST--DTLTPAII 716

Query: 503  SDTLNP---SNPSHSPN-SESPTHTPAQNDPNPPSPLNIQSDPPPYSPVASVPSPSIPNP 562
            +  L+P   SN SH+ + S SP+ + A +  + P+     S  P        PSPS P P
Sbjct: 717  TSFLSPTFCSNGSHTSSLSSSPSTSEASDSVSSPTVTPASSTLPEAIHEDQPPSPS-PAP 776

Query: 563  NPTPQPTHPM----------------------------------------ITRGKAGIFK 622
              T +    M                                        I R KA +  
Sbjct: 777  RMTTRLMRAMDLEIAALHRNQTWDLVEQPSEVNLIGCKWVYKLKHKPDVSIERYKARLVA 836

Query: 623  P---KSSSIGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQ 655
                ++  + +FETF+PV+KA+TIRI+L +A+S QW IRQLD +NAFLNG L+E VYM+Q
Sbjct: 837  KGYNQTHGLDYFETFSPVVKAATIRIILIVALSFQWEIRQLDVHNAFLNGELEEQVYMSQ 896

BLAST of CmUC03G060900 vs. NCBI nr
Match: GAU17915.1 (hypothetical protein TSUD_330400, partial [Trifolium subterraneum])

HSP 1 Score: 301.6 bits (771), Expect = 1.7e-77
Identity = 255/814 (31.33%), Postives = 352/814 (43.24%), Query Frame = 0

Query: 4   ASGRSTSGQRSQNINQNNGWGTQFNEQCGGFNLNANRGQGNGRGQGGNCPICQVCGKMGH 63
           A+  + S  R    N NN W         G N    RG G GRG+    P CQVCG+  H
Sbjct: 220 ANVANRSNHRGNRFNSNNNW--------RGSNFRGWRG-GRGRGRSSKTP-CQVCGRDNH 279

Query: 64  TAFVCYHRYEKEFVPNN--SNNNTKGTNGGNNSTSINGGKNAPTAMMATQNNNPFMTNTD 123
            A  C++R++K +  +N  SNN+ +G                        ++N F+ + +
Sbjct: 280 IAIDCFYRFDKTYSRSNHSSNNDKQG------------------------SHNVFLASQN 339

Query: 124 GVLDSSWYVDNGASNNVTTDYSNLNNPMEYKGLG---------------GRVISKGVLKD 183
            V D  WY D+GASN+VT   +   +  E+ G                 GR I +G LKD
Sbjct: 340 SVEDYDWYFDSGASNHVTHQTNKFQDMAEHHGKNSLVVGNGEKLEIVATGRTILRGTLKD 399

Query: 184 GLYQL--EDTAAIKNPEVFEESKTGVNLYKDSLLALNLS---------------NVQFNS 243
           GLYQL  +D++A  + +     K G    K+ L  ++                  V F  
Sbjct: 400 GLYQLSEKDSSAYVSVKESWHRKLGHPNNKEILELVHTDVWGPAPIISSSGFKYYVHFID 459

Query: 244 VVSKHIWHRRLGHPSSSVFEFI-----VKNR----------DNGGECCKIQQLCSHLGIQ 303
             ++  W   L   S +   FI     V+N+          D GGE   +Q+     GIQ
Sbjct: 460 DFTRFTWIYPLKQKSDTAHAFIQFKNMVENQFNKRIKTIQCDGGGEYKAVQKHAIEAGIQ 519

Query: 304 TQMSCPHTLEQNGRVERKHGHVVGMGLTLMAQIFIPLQFWWDAFATAAQLINGLPTPILK 363
            +MSCP+T +QNGR ERKH H+   GLTL+AQ  +PL +WW+AF+TA  LIN LP+P+  
Sbjct: 520 FRMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWWEAFSTAVYLINRLPSPV-- 579

Query: 364 AHTISPPS--HPSSP-HNQLEPI---ISDTLNPSN------------------------- 423
            H  SP S  H   P +N L+P        L P N                         
Sbjct: 580 THNESPYSLLHKKEPDYNSLKPFGCACYPCLKPYNKHKLQFHTTKCVFLGYSNSHKGYKC 639

Query: 424 --------------------PSH---------------SPNSESPTH--------TPAQN 483
                               P H               SP+S  P H        T +  
Sbjct: 640 VNSHGRVFISRHVVFNEDHFPFHDGFLNTRVPLKTLTGSPSSHFPLHVAEPTSSSTESSE 699

Query: 484 DPNPPSPLNIQSDPPPYSPVASVPSPSIPNPNPTPQPTHPMITRGKAGIFKPK------- 543
           D       + +      + VA+  + ++P        TH M TR K GI KPK       
Sbjct: 700 DNINTEQASNELTQDDDADVAAPDTRTVPIEVEASNNTHWMRTRSKDGIRKPKLPYIGLA 759

Query: 544 ------------------------------------------------------------ 603
                                                                       
Sbjct: 760 ENHIEEKEPGNAQEALRRPEWKEAMHKEFQALMTNQTWTLIPYQDQESIIDSEWVFKIKY 819

Query: 604 --------------------SSSIGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNN 608
                               ++ +G+ ETF+PV+KASTIRI+LS+A+   W ++QLD NN
Sbjct: 820 KADGTIERRKARLVAKGFQQTAGLGYEETFSPVVKASTIRIILSIAVHLNWEVKQLDINN 879

BLAST of CmUC03G060900 vs. NCBI nr
Match: XP_016902198.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902199.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902200.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902201.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902202.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 1.0e-74
Identity = 152/292 (52.05%), Postives = 185/292 (63.36%), Query Frame = 0

Query: 417 IGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQPPGYIDPD 476
           + FFETF+PVIKASTIR+VLS+A+   W +RQLDFNNAFLNG L+E VYMTQPPGY+ P 
Sbjct: 79  VDFFETFSPVIKASTIRVVLSIAVPNGWPLRQLDFNNAFLNGHLEENVYMTQPPGYVHPS 138

Query: 477 HPNHVCRLNKALYGLKQAPRVWRNTLKSTLQSWGFINSRSDSSLFILRIGQSIILLLVYV 536
           +PN+VC+LNKA+YGLKQAP  W  TL   L  WGFINSRSDSSLFI R   S++LLLVYV
Sbjct: 139 YPNYVCKLNKAIYGLKQAPCTWNATLSKELLKWGFINSRSDSSLFIFRRNNSVVLLLVYV 198

Query: 537 DNVIVTRNDGDLISKLIISLDSNFTLKDLGTLRYFLSIQLQYMESGVLMHQSKYVDDLLF 596
           D++IVT ND  LIS LI SLD  F LKDLG L YFL  Q+ Y+ESG +++Q KY+ DLL 
Sbjct: 199 DDIIVTGNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLESGFILNQEKYISDLLH 258

Query: 597 KLQMSNVKSAPH------------------------------------------------ 655
           KLQ+S++K  P                                                 
Sbjct: 259 KLQLSDLKPTPSPSVVGKNLSAFGGTPLEDPFVYRSTIGALQNLTNTRPDIAYIVNQLSQ 318

BLAST of CmUC03G060900 vs. NCBI nr
Match: GAU19483.1 (hypothetical protein TSUD_77270 [Trifolium subterraneum])

HSP 1 Score: 285.0 bits (728), Expect = 1.6e-72
Identity = 283/1016 (27.85%), Postives = 385/1016 (37.89%), Query Frame = 0

Query: 18   NQNNGWGTQFNEQCGGFNLNANRGQGNGRGQGGNCPICQVCGKMGHTAFVCYHRYEKEFV 77
            N+++  G   N    G N    RG G GRG+ G  P CQVCG   H A  C+HR++K + 
Sbjct: 224  NRSDHRGKSSNNNWRGSNSRGWRG-GRGRGKSGKNP-CQVCGLSNHIAIDCFHRFDKTY- 283

Query: 78   PNNSNNNTKGTNGGNNSTSINGGKNAPTAMMATQNNNPFMTNTDGVLDSSWYVDNGASNN 137
             + SN++      G                    ++N F+ + + V D  WY D+GASN+
Sbjct: 284  -SRSNHSAGHDKQG--------------------SHNAFLASQNSVEDYDWYFDSGASNH 343

Query: 138  VTTDYSNLNNPMEYKG-------------------------------------------- 197
            VT       +  E+ G                                            
Sbjct: 344  VTHQTEKFQDLTEHHGKNSLVVGNGEKLAILATGSSKLKSLNLHDILYVPNITKNLLSVS 403

Query: 198  ----------------------LGGRVISKGVLKDGLYQLEDTAAIKNPEVF-------- 257
                                  L G+VI KG+LKDGLYQL  T   +NP  F        
Sbjct: 404  KLAADNNILVEFDENCCFVKDKLTGKVILKGLLKDGLYQLSGTK--RNPSAFVSVKESWH 463

Query: 258  ---------------EESKTGV------------NLYKDSLLALNLSN------------ 317
                           E  K  V               K  LL    S+            
Sbjct: 464  RRLGHPNNKVLDKVLESCKVKVPPSDNFSFCEACQYGKMHLLPFKSSSSHAQEPLELVHT 523

Query: 318  -----------------VQFNSVVSKHIWHRRLGHPSSSVFEFI---------------V 377
                             V F    S+  W   L   S +V  FI               V
Sbjct: 524  DVWGPAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAFIQFKNLTENQFNKRIKV 583

Query: 378  KNRDNGGECCKIQQLCSHLGIQTQMSCPHTLEQNGRVERKHGHVVGMGLTLMAQIFIPLQ 437
               D GGE   +Q+L    GIQ +MSCP+T +QNGR ERKH H+   GLTL+AQ  +PL 
Sbjct: 584  IQCDGGGEYKPVQKLAVEAGIQFRMSCPYTSQQNGRAERKHRHITEFGLTLLAQAQMPLH 643

Query: 438  FWWDAFATAAQLINGLPTPILK-----------------AHTISPPSHPS-SPHNQLEPI 497
            +WW+AF+TA  LIN LP+ + +                   T     +P   P+NQ +  
Sbjct: 644  YWWEAFSTAVYLINRLPSQVTQNESPYSLMLQKEPDYKLLKTFGCACYPCLKPYNQHKLQ 703

Query: 498  ISDT----------------LNPS-----------NPSHSP------NSESPTHTPAQND 557
               T                LN             N  H P      N+ SP  T   N 
Sbjct: 704  YHTTRCVFLGYSNSHKGYKCLNSHGRIFISRHVIFNEDHFPFHDGFLNTRSPLKTTI-NV 763

Query: 558  PNPPSPL----NIQSDPPPYSPVASVPSPSIPN--------------------PNPTPQP 617
            P+   PL    N+  D     P+    +P+  N                     N T + 
Sbjct: 764  PSTSFPLCTAGNVIDDAS--MPILEAENPAETNTEDSQDVNSDTEQTNNGPSEDNTTHEE 823

Query: 618  T-------------------HPMITRGKAGIFKPK------------------------- 655
            T                   H + TR K+GI KPK                         
Sbjct: 824  TLDITQQQSVGEASQNTNTSHAIHTRSKSGIHKPKLPYIGLTETYKDTMEPANAKEALSR 883

BLAST of CmUC03G060900 vs. NCBI nr
Match: RVW33027.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 284.6 bits (727), Expect = 2.1e-72
Identity = 210/631 (33.28%), Postives = 288/631 (45.64%), Query Frame = 0

Query: 212  SKHIWHRRLGHPSSSVFEFI-----VKNR----------DNGGECCKIQQLCSHLGIQTQ 271
            S+H W   L     ++  FI     V+N+          DNGGE    +      GI  Q
Sbjct: 567  SRHTWIYFLSTKDQALQSFITFRKMVENQLQTTIKCIQSDNGGEFLAFKPYLEAHGILHQ 626

Query: 272  MSCPHTLEQNGRVERKHGHVVGMGLTLMAQIFIPLQFWWDAFATAAQLIN---------- 331
             SCPHT +QNGR ERK  H+V  GL LMAQ F+P ++W  AF TA  LIN          
Sbjct: 627  FSCPHTPQQNGRAERKIRHLVETGLALMAQSFLPSKYWTYAFQTAVYLINLLPAKLLHFQ 686

Query: 332  --------GLPTPILKAHTISPPSHP----SSPHNQLEPIISDTLN------PSNPSHSP 391
                      PT I+   +++  SHP     + ++ + P++   L+       S+P  SP
Sbjct: 687  SPTQTFFINFPTIIISESSVACVSHPYVLIHNINSAIAPLLVSFLDMHQLIKSSSPPSSP 746

Query: 392  NSESPTHTP---------AQNDPNPPSPLNIQSDPPPYSPVA-SVPSPSIPNPNPTPQPT 451
            +   P+ TP         A + P   SP+      PP  PV  +  SP+ P+P P P  T
Sbjct: 747  SPHLPSSTPALINSPSLSAPSSPAVSSPIITSDSVPPLIPVPFATSSPAAPSPPPLPLNT 806

Query: 452  HPMITRGKAGIFKPKS-------------------------------------------- 511
            HPM+TR K+GI K +S                                            
Sbjct: 807  HPMVTRAKSGIHKKRSFIVQHTTEPRTYSQASKNDSWVQAMNSEYQALLRNNTWSLVPPP 866

Query: 512  -------------------------------------SSIGFFETFNPVIKASTIRIVLS 571
                                                   I +F+TF+PV+K  TIR++L+
Sbjct: 867  SSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLILA 926

Query: 572  LAISQQWIIRQLDFNNAFLNGRLDEIVYMTQPPGYIDPDHPNHVCRLNKALYGLKQAPRV 631
            LA+S QW +RQLD  NAFLNG L+E V+MTQP G+++P +P +VC+L+KALYGLKQAPR 
Sbjct: 927  LAVSFQWSVRQLDVENAFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRA 986

Query: 632  WRNTLKSTLQSWGFINSRSDSSLFILRIGQSIILLLVYVDNVIVTRNDGDLISKLIISLD 655
            W   L+  L  +GF +SR+D+SLFI      I++LLVYVD+ +VT ++  L+S  I  L 
Sbjct: 987  WFQKLRIALLDYGFQSSRADTSLFIFHTATDILILLVYVDD-MVTGSNPMLVSHFISYLR 1046

BLAST of CmUC03G060900 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.6e-54
Identity = 201/733 (27.42%), Postives = 276/733 (37.65%), Query Frame = 0

Query: 236  DNGGECCKIQQLCSHLGIQTQMSCPHTLEQNGRVERKHGHVVGMGLTLMAQIFIPLQFWW 295
            DNGGE   + +  S  GI    S PHT E NG  ERKH H+V  GLTL++   IP  +W 
Sbjct: 592  DNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWP 651

Query: 296  DAFATAAQLINGLPTPILKA---------------------------------------- 355
             AFA A  LIN LPTP+L+                                         
Sbjct: 652  YAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKS 711

Query: 356  ------------------------------------------------------------ 415
                                                                        
Sbjct: 712  RQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCV 771

Query: 416  -----------------------HTISPPSHPSSPHNQLEPIISDTLN-------PSNP- 475
                                   H  +PPS PS+P    + + S  L+       PS+P 
Sbjct: 772  WSPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQ-VSSSNLDSSFSSSFPSSPE 831

Query: 476  -----------------------------SHSPNSESPTH------TPAQNDPNPPSPLN 535
                                          ++P +ESP+       TPAQ+  + PSP  
Sbjct: 832  PTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTT 891

Query: 536  IQS----DPPPYSPVASVPSP---SIPNPNPTPQPTHPMITRGKAGIFKPK--------- 595
              S     P P S +   P P    + N N  P  TH M TR KAGI KP          
Sbjct: 892  SASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSL 951

Query: 596  --------------------------SSSIG----------------------------- 655
                                      ++ IG                             
Sbjct: 952  AAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNS 1011

BLAST of CmUC03G060900 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 8.6e-53
Identity = 115/292 (39.38%), Postives = 165/292 (56.51%), Query Frame = 0

Query: 417  IGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQPPGYIDPD 476
            + + ETF+PVIK+++IRIVL +A+ + W IRQLD NNAFL G L + VYM+QPPG++D D
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKD 1074

Query: 477  HPNHVCRLNKALYGLKQAPRVWRNTLKSTLQSWGFINSRSDSSLFILRIGQSIILLLVYV 536
             P++VCRL KA+YGLKQAPR W   L++ L + GF+NS SD+SLF+L+ G+SII +LVYV
Sbjct: 1075 RPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYV 1134

Query: 537  DNVIVTRNDGDLISKLIISLDSNFTLKDLGTLRYFLSIQLQYMESGVLMHQSKYVDDLLF 596
            D++++T ND  L+   + +L   F++K+   L YFL I+ + +  G+ + Q +Y  DLL 
Sbjct: 1135 DDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLA 1194

Query: 597  KLQMSNVKSA-------------------------------------------------- 655
            +  M   K                                                    
Sbjct: 1195 RTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQ 1254


HSP 2 Score: 81.6 bits (200), Expect = 3.5e-14
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 0

Query: 227 VFEFIVKNR----------DNGGECCKIQQLCSHLGIQTQMSCPHTLEQNGRVERKHGHV 286
           +F+ +V+NR          DNGGE   ++   S  GI    S PHT E NG  ERKH H+
Sbjct: 552 IFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHI 611

Query: 287 VGMGLTLMAQIFIPLQFWWDAFATAAQLINGLPTPILK 315
           V MGLTL++   +P  +W  AF+ A  LIN LPTP+L+
Sbjct: 612 VEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQ 649

BLAST of CmUC03G060900 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 9.2e-31
Identity = 94/306 (30.72%), Postives = 144/306 (47.06%), Query Frame = 0

Query: 413  KSSSIGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQPPGY 472
            +   I F E F+PV+K ++IR +LSLA S    + QLD   AFL+G L+E +YM QP G+
Sbjct: 885  QKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGF 944

Query: 473  IDPDHPNHVCRLNKALYGLKQAPRVWRNTLKSTLQSWGFINSRSDSSLFILRIGQ-SIIL 532
                  + VC+LNK+LYGLKQAPR W     S ++S  ++ + SD  ++  R  + + I+
Sbjct: 945  EVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFII 1004

Query: 533  LLVYVDNVIVTRNDGDLISKLIISLDSNFTLKDLGTLRYFLSIQL--QYMESGVLMHQSK 592
            LL+YVD++++   D  LI+KL   L  +F +KDLG  +  L +++  +     + + Q K
Sbjct: 1005 LLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEK 1064

Query: 593  YVDDLLFKLQMSNVKSA------------------------------------------- 652
            Y++ +L +  M N K                                             
Sbjct: 1065 YIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVC 1124

Query: 653  ------------------PHYIHWQAVKQVLRYINGTKHYGLVLQPSLDTQVTAYSDADW 655
                              P   HW+AVK +LRY+ GT    L    S D  +  Y+DAD 
Sbjct: 1125 TRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGS-DPILKGYTDADM 1184

BLAST of CmUC03G060900 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-28
Identity = 90/296 (30.41%), Postives = 137/296 (46.28%), Query Frame = 0

Query: 417  IGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQPPGYIDPD 476
            I + ETF PV + S+ R +LSL I     + Q+D   AFLNG L E +YM  P G     
Sbjct: 969  IDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SC 1028

Query: 477  HPNHVCRLNKALYGLKQAPRVWRNTLKSTLQSWGFINSRSDSSLFILRIG--QSIILLLV 536
            + ++VC+LNKA+YGLKQA R W    +  L+   F+NS  D  ++IL  G     I +L+
Sbjct: 1029 NSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLL 1088

Query: 537  YVDNVIVTRNDGDLISKLIISLDSNFTLKDLGTLRYFLSIQLQYMESGVLMHQSKYVDDL 596
            YVD+V++   D   ++     L   F + DL  +++F+ I+++  E  + + QS YV  +
Sbjct: 1089 YVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKI 1148

Query: 597  LFKLQMSNVKSA----PHYIH--------------------------------------- 654
            L K  M N  +     P  I+                                       
Sbjct: 1149 LSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNIL 1208

BLAST of CmUC03G060900 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-16
Identity = 42/134 (31.34%), Postives = 74/134 (55.22%), Query Frame = 0

Query: 449 LDFNNAFLNGRLDEIVYMTQPPGYIDPDHPNHVCRLNKALYGLKQAPRVWRNTLKSTLQS 508
           +D + AFLN  +DE +Y+ QPPG+++  +P++V  L   +YGLKQAP +W   + +TL+ 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 509 WGFINSRSDSSLFILRIGQSIILLLVYVDNVIVTRNDGDLISKLIISLDSNFTLKDLGTL 568
            GF     +  L+        I + VYVD+++V      +  ++   L   +++KDLG +
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 569 RYFLSIQLQYMESG 583
             FL + +    +G
Sbjct: 121 DKFLGLNIHQSSNG 134

BLAST of CmUC03G060900 vs. ExPASy TrEMBL
Match: A0A438EYB0 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_92 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.1e-78
Identity = 272/901 (30.19%), Postives = 380/901 (42.18%), Query Frame = 0

Query: 23   WGTQFNEQCGGFNLNANRGQGN----------GRGQGGNC-------------PICQVCG 82
            + +  N + GG   N  RGQ +          GRG+GG               P CQ+CG
Sbjct: 237  YASSTNSRGGGRRYNGGRGQNHTPNISNYTYRGRGRGGRYGQNGRHNSNSSEKPQCQLCG 296

Query: 83   KMGHTAFVCYHRYEKEFVPNNSNNNTKGTNGGNNSTSINGGKNAPTAMMATQNNNPFMTN 142
            K GHT  +CYH ++  +  ++ ++NT  +N GN         N+  AM+A+ NN      
Sbjct: 297  KFGHTVQICYHIFDISY-QSSQSSNTSPSNAGN--------PNSIPAMVASSNN------ 356

Query: 143  TDGVLDSSWYVDNGASNNVTTDYSNLNNPMEYKGLGGRVISKG----VLKDGLYQ-LEDT 202
               + D +WY+D+GAS+++T    NL +   Y G     I  G    +   G ++ L D+
Sbjct: 357  ---LADDTWYLDSGASHHLTQSVGNLTSSSPYTGTDKVTIGNGKHLSISNTGSHRLLFDS 416

Query: 203  AAIKNPEVFEESKTGVN--------------------------LYKDSLLA--------- 262
             +    +VF       N                          L+   +LA         
Sbjct: 417  RSFHLKKVFHVPFISANLISVAKFCSDNNALIEFRSNSFFVKDLHTKKVLAQGKLENGLY 476

Query: 263  ----LNLSNVQF-----NSVVSKH----------IWHRRLGHPSSSV------------- 322
                LN   V F     +S    H          +WH RLGH S+ +             
Sbjct: 477  RFPVLNSKKVAFVGATNSSTFYSHNSSIFDNKVKLWHHRLGHASTDILAKSHRLPTHLSL 536

Query: 323  ---------------------------------------------------------FEF 382
                                                                     F+ 
Sbjct: 537  SCASKPLELVHTDLWGPASVKSTSGARYFILFLDDYSRYTWFYPLQTKDQAIPAFKKFKL 596

Query: 383  IVKNR----------DNGGECCKIQQLCSHLGIQTQMSCPHTLEQNGRVERKHGHVVGMG 442
             V+N+          DNGGE    +      GI  + SCP+   QNGRVERKH HVV  G
Sbjct: 597  QVENQFDAKIKCLQSDNGGEFRSFKTFLQQTGIFHRFSCPYNSAQNGRVERKHRHVVETG 656

Query: 443  LTLMAQIFIPLQFWWDAFATAAQLINGLPTP----ILKAHTISPPSHPSSPHNQLEP-II 502
            L L+A   +P++FW   F T   LIN +P+     + K H +SP    S+  + L P II
Sbjct: 657  LALLAHASLPMEFWQYVFQTTTFLINRMPSKGQFLLAKTHPLSPTKDTST--DTLTPAII 716

Query: 503  SDTLNP---SNPSHSPN-SESPTHTPAQNDPNPPSPLNIQSDPPPYSPVASVPSPSIPNP 562
            +  L+P   SN SH+ + S SP+ + A +  + P+     S  P        PSPS P P
Sbjct: 717  TSFLSPTFCSNGSHTSSLSSSPSTSEASDSVSSPTVTPASSTLPEAIHEDQPPSPS-PAP 776

Query: 563  NPTPQPTHPM----------------------------------------ITRGKAGIFK 622
              T +    M                                        I R KA +  
Sbjct: 777  RMTTRLMRAMDLEIAALHRNQTWDLVEQPSEVNLIGCKWVYKLKHKPDVSIERYKARLVA 836

Query: 623  P---KSSSIGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQ 655
                ++  + +FETF+PV+KA+TIRI+L +A+S QW IRQLD +NAFLNG L+E VYM+Q
Sbjct: 837  KGYNQTHGLDYFETFSPVVKAATIRIILIVALSFQWEIRQLDVHNAFLNGELEEQVYMSQ 896

BLAST of CmUC03G060900 vs. ExPASy TrEMBL
Match: A0A1S4E1U4 (uncharacterized mitochondrial protein AtMg00810-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.9e-75
Identity = 152/292 (52.05%), Postives = 185/292 (63.36%), Query Frame = 0

Query: 417 IGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQPPGYIDPD 476
           + FFETF+PVIKASTIR+VLS+A+   W +RQLDFNNAFLNG L+E VYMTQPPGY+ P 
Sbjct: 79  VDFFETFSPVIKASTIRVVLSIAVPNGWPLRQLDFNNAFLNGHLEENVYMTQPPGYVHPS 138

Query: 477 HPNHVCRLNKALYGLKQAPRVWRNTLKSTLQSWGFINSRSDSSLFILRIGQSIILLLVYV 536
           +PN+VC+LNKA+YGLKQAP  W  TL   L  WGFINSRSDSSLFI R   S++LLLVYV
Sbjct: 139 YPNYVCKLNKAIYGLKQAPCTWNATLSKELLKWGFINSRSDSSLFIFRRNNSVVLLLVYV 198

Query: 537 DNVIVTRNDGDLISKLIISLDSNFTLKDLGTLRYFLSIQLQYMESGVLMHQSKYVDDLLF 596
           D++IVT ND  LIS LI SLD  F LKDLG L YFL  Q+ Y+ESG +++Q KY+ DLL 
Sbjct: 199 DDIIVTGNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLESGFILNQEKYISDLLH 258

Query: 597 KLQMSNVKSAPH------------------------------------------------ 655
           KLQ+S++K  P                                                 
Sbjct: 259 KLQLSDLKPTPSPSVVGKNLSAFGGTPLEDPFVYRSTIGALQNLTNTRPDIAYIVNQLSQ 318

BLAST of CmUC03G060900 vs. ExPASy TrEMBL
Match: A0A2N9FCV6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12817 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.0e-74
Identity = 228/666 (34.23%), Postives = 321/666 (48.20%), Query Frame = 0

Query: 53  PICQVCGKMGHTAFVCYHRYEKEFVPNNSNNNTKGTNGGNNSTSINGGKNAPTAMMATQN 112
           P+CQ+CGK+GH A  CYHR +  +                       GKN PT + A  N
Sbjct: 252 PVCQICGKIGHYAIDCYHRMDFAY----------------------QGKNPPTKLAAMAN 311

Query: 113 NNPFMTNTDGVLDSSWYVDNGASNNVTTDYSNLNNPMEYKGLGGRVISKG---------- 172
            +  +  T G  D +W  D+GAS+++T + +NLN P+ +KG     +  G          
Sbjct: 312 ASN-LNITQGNND-TWLTDSGASDHITANLNNLNQPIPFKGPEQVSVGNGQNLPIQNIGK 371

Query: 173 ------------------VLKDGLYQLEDTAAIKNPEVFEESKTGVNLYKDSLLALNLSN 232
                             VL   L+     A I++   F+     V+ Y        L N
Sbjct: 372 MHKLPFPISVPKSEFPLHVLHTNLW---GPAPIQSYNGFKYYLVIVDDYTKFCWVYLLKN 431

Query: 233 --------VQFNSVVSKHIWHRRLGHPSSSVFEFIVKNRDNGGE--CCKIQQLCSHLGIQ 292
                    QF ++  KH          +S   F+    D GGE         C+  GI 
Sbjct: 432 KSDTFTTFQQFKAMAEKHY---------NSSIHFL--RTDCGGEFTSTAFNSYCATSGII 491

Query: 293 TQMSCPHTLEQNGRVERKHGHVVGMGLTLMAQIFIPLQFWWDAFATAAQLINGLPTPILK 352
             ++CPHT +QNG  ERKH H++   L L++Q  + L +W  A ATA+ LIN LPTP+L 
Sbjct: 492 HHLTCPHTPQQNGVAERKHRHLIQTTLALLSQSGLSLSYWSYALATASHLINKLPTPLL- 551

Query: 353 AHTISPPSHPSSPHNQLEPIISDTLNPSNPSHSPNSESPTHTPAQNDPNPPSPLNIQSDP 412
                   + SSP  QL           + S +PNS +P  +PA N     SP  + +  
Sbjct: 552 --------NMSSPWEQL-----------HHSPAPNSAAP-QSPAPNSTASQSPAPLSAIT 611

Query: 413 PPYSPVASVPSPSIPNPNPT----PQPTHPMITRGKAGIFKPKSSS-------------- 472
           P + P ++      PN   T    P P H  I  G   ++K K+ S              
Sbjct: 612 PAHVPNSTETPAPAPNSAGTWSLVPPPQHHNIV-GCKWVYKLKTHSDGSIARYKARLVAK 671

Query: 473 -------IGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQP 532
                  I F ETF+PVIK  T+R++LSLA+S  W +RQLD +NAFL+G L E VYM+QP
Sbjct: 672 GFHQQQGIDFDETFSPVIKPPTVRMILSLAVSLNWPLRQLDVSNAFLHGILKEEVYMSQP 731

Query: 533 PGYIDPDHPNHVCRLNKALYGLKQAPRVWRNTLKSTLQSWGFINSRSDSSLFILRIGQSI 592
            GYI   HP++VCRL K++YGLKQAPR W       L  +GF  S +DSSLFI R    I
Sbjct: 732 QGYISAQHPDYVCRLYKSIYGLKQAPRAWFERFTGQLIQFGFTASAADSSLFIYRSKTII 791

Query: 593 ILLLVYVDNVIVTRNDGDLISKLIISLDSNFTLKDLGTLRYFLSIQLQYMESGVLMHQSK 652
             LL+YVD++++T N  + +  LI  L S F LKDLG+L YFL IQL+      L + + 
Sbjct: 792 AYLLLYVDDIVLTSNTPNFLDTLIQHLSSIFELKDLGSLHYFLGIQLE-----ALHYLTF 851

Query: 653 YVDDLLFKL-QMSNVKSAPHYIHWQAVKQVLRYINGTKHYGLVLQPSLDTQVTAYSDADW 655
              DL F + ++    ++P  +H    K++LRY+ GT H GL  +P    +++A+ DADW
Sbjct: 852 TRPDLSFAVHRVCQYMASPTSVHLTVAKRILRYLKGTLHLGLSFRPG-PLKLSAFMDADW 851

BLAST of CmUC03G060900 vs. ExPASy TrEMBL
Match: A0A2N9EBV4 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS144 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 9.2e-74
Identity = 234/708 (33.05%), Postives = 322/708 (45.48%), Query Frame = 0

Query: 127  SWYVDNGASNNVTTDYSNLNNPMEYKGLGGRVISKG----VLKDG-LYQLEDTAAIKNPE 186
            SW  D+GA +++T + +NLN  + Y+G+    +  G    +   G ++QL    + K+  
Sbjct: 317  SWLTDSGAFDHITANANNLNPQVPYQGIEQVSVGNGQNLPIQNIGKMHQLPFPISNKH-V 376

Query: 187  VFEESKTGVNLYKDS-LLALNLSNVQFNSV--VSKHIWHRRLGHPSS-----SVFEFIVK 246
            VF       +L+  + +++ N        V   +K  W   L H S      S F  +V+
Sbjct: 377  VFPFELVHADLWGPAPVVSTNAFRYYLVLVDDFTKFTWVYLLKHKSDTLTFFSQFRAMVE 436

Query: 247  NR----------DNGGECCKIQ--QLCSHLGIQTQMSCPHTLEQNGRVERKHGHVVGMGL 306
             +          D GGE    Q  Q C+  GI  Q+SCPHT +QNG  ERKH H+V   L
Sbjct: 437  TQFSLPIKALRSDCGGEFTSNQFNQFCASKGIIHQLSCPHTPQQNGVAERKHRHLVQCAL 496

Query: 307  TLMAQIFIPLQFWWDAFATAAQLINGLPTP---------ILKAHTISPPSHPSSPHNQLE 366
             L++Q  +P+ +W  A +TAA LIN LPTP         I + H     S P    N  +
Sbjct: 497  ALLSQSNLPMSYWSYAISTAAHLINRLPTPNLGHKSPWQIYQLHAQESSSLPHGHSNPCD 556

Query: 367  PII-SDTLNPSNPSHSPNSESPTHTPAQNDPNP-----PSPLN-IQSDPPPYSPVASVPS 426
            P++ S TL P +P+    S  PT+       +P     PSP+N I +D PP   +    S
Sbjct: 557  PLVTSTTLAPQHPTPLSTSLFPTNHTQSTAESPLQSAIPSPMNQIPTDAPPLVCI----S 616

Query: 427  PSIPNPNPTPQPTHPMITRGKAGIFKPK-------------------------------- 486
            P++P P P   PTHPM TR K+GIFKPK                                
Sbjct: 617  PTVPQPLP---PTHPMQTRSKSGIFKPKVTYAAQVDYTTTEPASYTPASKHTQWCTAMDE 676

Query: 487  -----------------------------------------------------SSSIGFF 546
                                                                    I F 
Sbjct: 677  EFQALQKQGTWSLVPMPANKNVVGCKWVYKLKHNSDGTIARYKARLVAKGFHQQHGIDFD 736

Query: 547  ETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQPPGYIDPDHPNH 606
            ETF+PVIK  T+R++LSLA+S +W +RQLD  NAFL+G L E VYMTQP GYID  HPN+
Sbjct: 737  ETFSPVIKPPTVRLILSLAVSLKWPLRQLDVKNAFLHGTLKEEVYMTQPQGYIDSAHPNY 796

Query: 607  VCRLNKALYGLKQAPRVWRNTLKSTLQSWGFINSRSDSSLFILRIGQSIILLLVYVDNVI 655
            VCRL+K++YGLKQAPR W  +  S L   GF  S +DSSLFI +    I  LL+YVD+++
Sbjct: 797  VCRLHKSIYGLKQAPRAWFESFTSQLLHLGFTASTADSSLFIYKTHTVIAYLLLYVDDIV 856

BLAST of CmUC03G060900 vs. ExPASy TrEMBL
Match: A0A803PYD1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.7e-73
Identity = 265/906 (29.25%), Postives = 378/906 (41.72%), Query Frame = 0

Query: 10   SGQRSQNINQNNGWGTQFNEQCGGFNLNANRGQGNGRGQGGNCPICQVCGKMGHTAFVCY 69
            SG  +   N   G+  Q +   GG   +  RG+G G G+G + P CQVCGK GH+A +C 
Sbjct: 283  SGNSNNGNNSGRGYTPQGSSSRGG---SGQRGRGRG-GRGNSKPTCQVCGKYGHSAAICC 342

Query: 70   HRYEKEFVPNNSNNNTKGTNGGNNSTSINGGKNAPTAMMATQNNNPFMTNTDGVLDSSWY 129
            +R+++ ++     +    +    N  S+         ++AT            + D SWY
Sbjct: 343  NRFDESYMGQPPPSEFNYSQDKQNPMSV---------LVATPQT---------LSDDSWY 402

Query: 130  VDNGASNNVTTDYSNLNNPMEYKGLGGRVISKG---------------------VLKDGL 189
             D+GA+N++T D   L N +EY G    ++  G                     +LKD L
Sbjct: 403  ADSGATNHLTPDSDKLKNKVEYGGKEQMIVGDGTKLSIKHIGSNVLNIPDSKCLILKDLL 462

Query: 190  YQ-----------------------LEDTAAIKNPE----VFEE----------SKTGVN 249
            +                          D   +K+      V +E          S+T  N
Sbjct: 463  HVPSITKNLISISSLTSDNDVSVEFFSDFCCVKDQTTGKVVLQETLKDGLYQFPSQTVNN 522

Query: 250  LYKDSLLALNLSNVQFNSVVS-KHIWHRRLGHPSSSVFEFIVKNRDNGGECCKIQQLCSH 309
            + +D+    + S  Q  S +S K  WHRRLGHPS++V   +                   
Sbjct: 523  ISRDTNKLFSGSVSQSKSFISLKDTWHRRLGHPSAAVLNQV------------------- 582

Query: 310  LGIQTQMSCPHTLEQNGRVERKHGHVVGMGLTLMAQIFIPLQFWWDAFATAAQLINGLPT 369
                  ++  +   QN R E KH H+V MGLTL+AQ  +PL++W DAF T+  LIN LPT
Sbjct: 583  ------LNISNVKHQNRRAESKHRHIVEMGLTLLAQAKMPLKYWSDAFQTSVYLINRLPT 642

Query: 370  PILK---------------------AHTISPPSHP------------------------- 429
              LK                       T  P   P                         
Sbjct: 643  VDLKGKSPFEVLYSKVPDYKFLKVFGSTCFPYLRPYQTHKFQYHSVKCLNLGYSEVHKGY 702

Query: 430  --SSPHNQLEPIISDTLNPSN-PSHS----------------PNS----ESPTHTPAQND 489
               SP  ++    + T N S  P HS                P+S     SP      +D
Sbjct: 703  KCLSPQGRIYISRNVTFNESEFPCHSGFFNNYQREKLITLDAPHSWFQLPSPILVTGSSD 762

Query: 490  PN------PPSPLNIQSDPPPYSPVASVPSP-------------SIPNPNP--------T 549
             +      P SP + Q     +S  +  P P             S P P+P        T
Sbjct: 763  TSPSVPAAPSSPTSTQQSVSSHSSFSGSPIPFATDDVLDSISMHSSPIPSPDIHPPVQTT 822

Query: 550  PQPTHPMITRGKAGIFKPKS---------------------------------------- 609
              PTHPMITR KAGIFKPK+                                        
Sbjct: 823  TAPTHPMITRAKAGIFKPKTYLSHNKISHGQHIPASVAEALQHEGWNSAMSDEFYALKRQ 882

Query: 610  ----------------------------------------------SSIGFFETFNPVIK 655
                                                            + F ETF+PV+K
Sbjct: 883  KTWSLVPRSLADNIVGCKWIFREKFNADGSHQRLKARLVAKGFHQRPGVDFGETFSPVVK 942

BLAST of CmUC03G060900 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 152.9 bits (385), Expect = 8.8e-37
Identity = 95/296 (32.09%), Postives = 141/296 (47.64%), Query Frame = 0

Query: 413 KSSSIGFFETFNPVIKASTIRIVLSLAISQQWIIRQLDFNNAFLNGRLDEIVYMTQPPGY 472
           +   I F ETF+PV K ++++++L+++    + + QLD +NAFLNG LDE +YM  PPGY
Sbjct: 157 QQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

Query: 473 I----DPDHPNHVCRLNKALYGLKQAPRVWRNTLKSTLQSWGFINSRSDSSLFILRIGQS 532
                D   PN VC L K++YGLKQA R W      TL  +GF+ S SD + F+      
Sbjct: 217 AARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATL 276

Query: 533 IILLLVYVDNVIVTRNDGDLISKLIISLDSNFTLKDLGTLRYFLSIQLQYMESGVLMHQS 592
            + +LVYVD++I+  N+   + +L   L S F L+DLG L+YFL +++    +G+ + Q 
Sbjct: 277 FLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQR 336

Query: 593 KYVDDLLFKL-------------------------------------------------- 651
           KY  DLL +                                                   
Sbjct: 337 KYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDIS 396

BLAST of CmUC03G060900 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-11
Identity = 47/171 (27.49%), Postives = 76/171 (44.44%), Query Frame = 0

Query: 532 LLVYVDNVIVTRNDGDLISKLIISLDSNFTLKDLGTLRYFLSIQLQYMESGVLMHQSKYV 591
           LL+YVD++++T +   L++ LI  L S F++KDLG + YFL IQ++   SG+ + Q+KY 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 592 DDLLFKLQM---------------SNVKSA------------------------------ 650
           + +L    M               S+V +A                              
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW52695.14.3e-7830.19Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
GAU17915.11.7e-7731.33hypothetical protein TSUD_330400, partial [Trifolium subterraneum][more]
XP_016902198.11.0e-7452.05PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucu... [more]
GAU19483.11.6e-7227.85hypothetical protein TSUD_77270 [Trifolium subterraneum][more]
RVW33027.12.1e-7233.28Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Q94HW21.6e-5427.42Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT948.6e-5339.38Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109789.2e-3130.72Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.5e-2830.41Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P256001.3e-1631.34Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
A0A438EYB02.1e-7830.19Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A1S4E1U44.9e-7552.05uncharacterized mitochondrial protein AtMg00810-like isoform X2 OS=Cucumis melo ... [more]
A0A2N9FCV67.0e-7434.23Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12817 PE=4 SV=1[more]
A0A2N9EBV49.2e-7433.05Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A803PYD12.7e-7329.25Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.18.8e-3732.09cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.13.7e-1127.49DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 204..320
e-value: 5.8E-11
score: 44.4
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 416..604
e-value: 1.3E-46
score: 159.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..357
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 358..398
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 316..406
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 76..581
NoneNo IPR availablePANTHERPTHR11439:SF331SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATEDcoord: 76..581
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 234..316
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 406..648

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC03G060900.1CmUC03G060900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding