Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGACGAAAGCAAGATCTCGATCATTGAAGTTCTAAAGGGAGGTTACTCTCTTTCGGTTAAGTGCTTGACTATTAATAAAACGAGCGGATGGGTAAAAAATATCTATGGGCCTAACGATTATAGAGAAAGGAAGCATCTATGGGAAGAATTGCACTCTTTGGCAGCCTATTGCACTGATGCTTGGTGCATTGGAGGAGATTTCAATGTCACAAGGAGGATTCAAGAGAGATTCCCTCAAGGTAAAACCACAAGAGGAATGAGGAAGTTCAACAATTTCATCTCTTCTTCACAACTTATGGAGCTTCCTCTACACAATGGAAGGTATACTTGGTCCCGAGAAGGCAATGGTTCCTCAAGATCCCTCTTAGACCGATTTCTAATTTCAAGTGAATGGGATGAACTCTTTGCTAACTCAAGAGTCACTAGACAATTGCGCATCCTCTCAGATCATTTCCCTATTTTATTAGAAGCTAGCTCCTTTGAATGTGGTCCCCCTCCATTCAGATTCTGTAACAATTGGCTTGAGATAAAAGATTGCTGTCTAGTCATCAAAAAAGCACTAGAATCAGACAATCATCATGGCTGGGCAGGATTTGTTCTGTCTACTAAACTCAGAGAGGTCAAATCAGCAGTAAAGACATGGAATTCAATCTTTGAAGGAGAAAGAAAGAAATCCGAGGAGACCCTAATATTTGAAATCGAGAAAAGAGATCTATTATTAGAAAATTCGGAGGAAGAAGGAGTAGACAATGTCCTTTGCCTTACATTGAAGGCTAACCTCTTATCACTTTACCGAATTGAGGAGAGAAATCTAATGCAGAAAAGTAAGTTGAATTGGCTAAGTTTGGGAGATGAGAATTCAAAATTCTTCCACAGATTCTTGTCAGCTAAAAAAAGAAGAAATCTGATTTCAGAATTGGAAAATGATCAAGGGGAAGTTACCACCTCTTATAAAGACATTGAAGATTTAATCCTGAAATTTTACAGCTCACTTTACACGAAAATTCCAGGCGAAAGAGCTCTCCCCTTGCATTTACATTGGCCGGAAATCAATGATTCTCAAAATAGAATGCTGGTTGCTCGTTTTACTATGGAAGAAGTGAAAATCGCGTTGAATCTTTTGGGAAAAAATAAAGCTCGGGGACCAGATGGTTTCACAGTGGAATTTTCTGAAATTTTGGGAGGAATTGAAGGATAA
mRNA sequence
ATGTGGGACGAAAGCAAGATCTCGATCATTGAAGTTCTAAAGGGAGGTTACTCTCTTTCGGTTAAGTGCTTGACTATTAATAAAACGAGCGGATGGGTAAAAAATATCTATGGGCCTAACGATTATAGAGAAAGGAAGCATCTATGGGAAGAATTGCACTCTTTGGCAGCCTATTGCACTGATGCTTGGTGCATTGGAGGAGATTTCAATGTCACAAGGAGGATTCAAGAGAGATTCCCTCAAGGTAAAACCACAAGAGGAATGAGGAAGTTCAACAATTTCATCTCTTCTTCACAACTTATGGAGCTTCCTCTACACAATGGAAGGTATACTTGGTCCCGAGAAGGCAATGGTTCCTCAAGATCCCTCTTAGACCGATTTCTAATTTCAAGTGAATGGGATGAACTCTTTGCTAACTCAAGAGTCACTAGACAATTGCGCATCCTCTCAGATCATTTCCCTATTTTATTAGAAGCTAGCTCCTTTGAATGTGGTCCCCCTCCATTCAGATTCTGTAACAATTGGCTTGAGATAAAAGATTGCTGTCTAGTCATCAAAAAAGCACTAGAATCAGACAATCATCATGGCTGGGCAGGATTTGTTCTGTCTACTAAACTCAGAGAGGTCAAATCAGCAGTAAAGACATGGAATTCAATCTTTGAAGGAGAAAGAAAGAAATCCGAGGAGACCCTAATATTTGAAATCGAGAAAAGAGATCTATTATTAGAAAATTCGGAGGAAGAAGGAGTAGACAATGTCCTTTGCCTTACATTGAAGGCTAACCTCTTATCACTTTACCGAATTGAGGAGAGAAATCTAATGCAGAAAAGTAAGTTGAATTGGCTAAGTTTGGGAGATGAGAATTCAAAATTCTTCCACAGATTCTTGTCAGCTAAAAAAAGAAGAAATCTGATTTCAGAATTGGAAAATGATCAAGGGGAAGTTACCACCTCTTATAAAGACATTGAAGATTTAATCCTGAAATTTTACAGCTCACTTTACACGAAAATTCCAGGCGAAAGAGCTCTCCCCTTGCATTTACATTGGCCGGAAATCAATGATTCTCAAAATAGAATGCTGGTTGCTCGTTTTACTATGGAAGAAGTGAAAATCGCGTTGAATCTTTTGGGAAAAAATAAAGCTCGGGGACCAGATGGTTTCACAGTGGAATTTTCTGAAATTTTGGGAGGAATTGAAGGATAA
Coding sequence (CDS)
ATGTGGGACGAAAGCAAGATCTCGATCATTGAAGTTCTAAAGGGAGGTTACTCTCTTTCGGTTAAGTGCTTGACTATTAATAAAACGAGCGGATGGGTAAAAAATATCTATGGGCCTAACGATTATAGAGAAAGGAAGCATCTATGGGAAGAATTGCACTCTTTGGCAGCCTATTGCACTGATGCTTGGTGCATTGGAGGAGATTTCAATGTCACAAGGAGGATTCAAGAGAGATTCCCTCAAGGTAAAACCACAAGAGGAATGAGGAAGTTCAACAATTTCATCTCTTCTTCACAACTTATGGAGCTTCCTCTACACAATGGAAGGTATACTTGGTCCCGAGAAGGCAATGGTTCCTCAAGATCCCTCTTAGACCGATTTCTAATTTCAAGTGAATGGGATGAACTCTTTGCTAACTCAAGAGTCACTAGACAATTGCGCATCCTCTCAGATCATTTCCCTATTTTATTAGAAGCTAGCTCCTTTGAATGTGGTCCCCCTCCATTCAGATTCTGTAACAATTGGCTTGAGATAAAAGATTGCTGTCTAGTCATCAAAAAAGCACTAGAATCAGACAATCATCATGGCTGGGCAGGATTTGTTCTGTCTACTAAACTCAGAGAGGTCAAATCAGCAGTAAAGACATGGAATTCAATCTTTGAAGGAGAAAGAAAGAAATCCGAGGAGACCCTAATATTTGAAATCGAGAAAAGAGATCTATTATTAGAAAATTCGGAGGAAGAAGGAGTAGACAATGTCCTTTGCCTTACATTGAAGGCTAACCTCTTATCACTTTACCGAATTGAGGAGAGAAATCTAATGCAGAAAAGTAAGTTGAATTGGCTAAGTTTGGGAGATGAGAATTCAAAATTCTTCCACAGATTCTTGTCAGCTAAAAAAAGAAGAAATCTGATTTCAGAATTGGAAAATGATCAAGGGGAAGTTACCACCTCTTATAAAGACATTGAAGATTTAATCCTGAAATTTTACAGCTCACTTTACACGAAAATTCCAGGCGAAAGAGCTCTCCCCTTGCATTTACATTGGCCGGAAATCAATGATTCTCAAAATAGAATGCTGGTTGCTCGTTTTACTATGGAAGAAGTGAAAATCGCGTTGAATCTTTTGGGAAAAAATAAAGCTCGGGGACCAGATGGTTTCACAGTGGAATTTTCTGAAATTTTGGGAGGAATTGAAGGATAA
Protein sequence
MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCTDAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSSRSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKDCCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDLLLENSEEEGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRMLVARFTMEEVKIALNLLGKNKARGPDGFTVEFSEILGGIEG
Homology
BLAST of CmUC03G059930 vs. NCBI nr
Match:
XP_038904301.1 (uncharacterized protein LOC120090656 [Benincasa hispida])
HSP 1 Score: 320.9 bits (821), Expect = 1.6e-83
Identity = 160/301 (53.16%), Postives = 213/301 (70.76%), Query Frame = 0
Query: 48 LWEELHSLAAYCTDAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHN 107
+W EL SLA D WCIG +FN RR ERFP G+ TR M FN FI + L+E PL N
Sbjct: 1 MWAELSSLAEKFDDPWCIGENFNSIRRRHERFPVGRATRDMNNFNKFIRLNNLLEFPLSN 60
Query: 108 GRYTWSREGNGSSRSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPP 167
G++TWSREG+ +S+SLLD FL+SS W+++F NSRV RQ R +SDHFP+ LEA +FE GP
Sbjct: 61 GQFTWSREGDVASKSLLDHFLVSSTWEDVFDNSRVARQARTMSDHFPLTLEAGAFEWGPS 120
Query: 168 PFRFCNNWLEIKDCCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKS 227
FRFCN+WL K+ C +I+K+L+ +H WA LST LR+ KSA+K W F E K
Sbjct: 121 SFRFCNSWLNNKESCKLIEKSLKKKENHQWAA-TLSTNLRKTKSALKKWFHEFGKEMKLK 180
Query: 228 EETLIFEIEKRD-LLLENSEEEGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGD 287
EE+L+ E++++D L ++ S + VD+ +LKA+LL+LY++EE++L+QK KL WL GD
Sbjct: 181 EESLLNELQRKDSLTVDVSSQIRVDDA-SYSLKADLLALYQLEEKSLIQKCKLKWLKEGD 240
Query: 288 ENSKFFHRFLSAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLH 347
EN+ FFHRFLS +KR+NL ++L NDQ T +DIED+IL FYS LY+K G RA+PL
Sbjct: 241 ENTSFFHRFLSTRKRKNLFAKLLNDQDLPTRFTRDIEDIILGFYSLLYSKSDGPRAIPLT 299
BLAST of CmUC03G059930 vs. NCBI nr
Match:
XP_038884536.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida])
HSP 1 Score: 296.6 bits (758), Expect = 3.2e-76
Identity = 138/264 (52.27%), Postives = 194/264 (73.48%), Query Frame = 0
Query: 128 LISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKDCCLVIKK 187
L+S WDE F +SRV+RQ R +SDHFP+L EA +FE GP PFRFCN+WL+ K+CC +I+
Sbjct: 59 LVSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIEN 118
Query: 188 ALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDLLLENSEE 247
+ WAGF L ++LR VK +VK W + E ++K EE+L+ EI+++DL + E
Sbjct: 119 SSLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLEN 178
Query: 248 EGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKKRRNLISE 307
+ + ++LKA+LLSLY+ EER+L+QKSKLNWL LGDEN+ FFHRFL+AK+R+NLI+E
Sbjct: 179 FSAEEDVRVSLKADLLSLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAE 238
Query: 308 LENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRMLVARFTME 367
L N+QG T S+++IE +IL F+S+LYTK G R++PL++ W ++ N L+A+F+
Sbjct: 239 LFNEQGLPTKSFREIETIILDFFSNLYTKCTGTRSIPLNMAWSRVSAEGNSRLIAKFSTT 298
Query: 368 EVKIALNLLGKNKARGPDGFTVEF 392
E+ +A+ LGKNKA GPDGFTVEF
Sbjct: 299 EITVAIQALGKNKAPGPDGFTVEF 322
BLAST of CmUC03G059930 vs. NCBI nr
Match:
XP_038884537.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida])
HSP 1 Score: 296.6 bits (758), Expect = 3.2e-76
Identity = 138/264 (52.27%), Postives = 194/264 (73.48%), Query Frame = 0
Query: 128 LISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKDCCLVIKK 187
L+S WDE F +SRV+RQ R +SDHFP+L EA +FE GP PFRFCN+WL+ K+CC +I+
Sbjct: 59 LVSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIEN 118
Query: 188 ALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDLLLENSEE 247
+ WAGF L ++LR VK +VK W + E ++K EE+L+ EI+++DL + E
Sbjct: 119 SSLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLEN 178
Query: 248 EGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKKRRNLISE 307
+ + ++LKA+LLSLY+ EER+L+QKSKLNWL LGDEN+ FFHRFL+AK+R+NLI+E
Sbjct: 179 FSAEEDVRVSLKADLLSLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAE 238
Query: 308 LENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRMLVARFTME 367
L N+QG T S+++IE +IL F+S+LYTK G R++PL++ W ++ N L+A+F+
Sbjct: 239 LFNEQGLPTKSFREIETIILDFFSNLYTKCTGTRSIPLNMAWSRVSAEGNSRLIAKFSTT 298
Query: 368 EVKIALNLLGKNKARGPDGFTVEF 392
E+ +A+ LGKNKA GPDGFTVEF
Sbjct: 299 EITVAIQALGKNKAPGPDGFTVEF 322
BLAST of CmUC03G059930 vs. NCBI nr
Match:
XP_038884535.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida])
HSP 1 Score: 296.6 bits (758), Expect = 3.2e-76
Identity = 138/264 (52.27%), Postives = 194/264 (73.48%), Query Frame = 0
Query: 128 LISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKDCCLVIKK 187
L+S WDE F +SRV+RQ R +SDHFP+L EA +FE GP PFRFCN+WL+ K+CC +I+
Sbjct: 59 LVSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIEN 118
Query: 188 ALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDLLLENSEE 247
+ WAGF L ++LR VK +VK W + E ++K EE+L+ EI+++DL + E
Sbjct: 119 SSLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLEN 178
Query: 248 EGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKKRRNLISE 307
+ + ++LKA+LLSLY+ EER+L+QKSKLNWL LGDEN+ FFHRFL+AK+R+NLI+E
Sbjct: 179 FSAEEDVRVSLKADLLSLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAE 238
Query: 308 LENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRMLVARFTME 367
L N+QG T S+++IE +IL F+S+LYTK G R++PL++ W ++ N L+A+F+
Sbjct: 239 LFNEQGLPTKSFREIETIILDFFSNLYTKCTGTRSIPLNMAWSRVSAEGNSRLIAKFSTT 298
Query: 368 EVKIALNLLGKNKARGPDGFTVEF 392
E+ +A+ LGKNKA GPDGFTVEF
Sbjct: 299 EITVAIQALGKNKAPGPDGFTVEF 322
BLAST of CmUC03G059930 vs. NCBI nr
Match:
RVX13544.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])
HSP 1 Score: 260.0 bits (663), Expect = 3.4e-65
Identity = 142/392 (36.22%), Postives = 211/392 (53.83%), Query Frame = 0
Query: 1 MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
+WD K+S EV+ G +S+S+K S W+ +YGPN+ RK LW EL +A +
Sbjct: 399 IWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDLWVELSDIAGLAS 458
Query: 61 DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
WC+GGDFNV RR E+ + T M+ F++FIS +L++LPL + +TWS
Sbjct: 459 PRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPV 518
Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
LDRFL S+EW++ F S R SDH+PI+LE + F+ GP PFRF N WL+
Sbjct: 519 CKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPS 578
Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
+ +GW G KL+ VK+ +K WN GE K +E ++ + D
Sbjct: 579 FKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSALVNFDS 638
Query: 241 LLENSEEEGVDNVLC---LTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLS 300
L +E G+ + L K L L EE + QK+++ W+ GD NSKFFH+ +
Sbjct: 639 L---EQEGGLSHELLAQRAIKKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 698
Query: 301 AKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQN 360
++ R I ELEN+ G++ + + I++ IL+++ LYT GE L W I+
Sbjct: 699 GRRNRKFIKELENENGQMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESA 758
Query: 361 RMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
L + FT EE+ A+ + ++KA GPDGFT+
Sbjct: 759 VRLESPFTEEEICKAIFQMDRDKAPGPDGFTI 787
BLAST of CmUC03G059930 vs. ExPASy Swiss-Prot
Match:
P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)
HSP 1 Score: 70.5 bits (171), Expect = 5.0e-11
Identity = 91/403 (22.58%), Postives = 167/403 (41.44%), Query Frame = 0
Query: 9 IIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCTDAWCIGGD 68
+I+ K G+ + +K + + + NIY PN R + + L L AY I GD
Sbjct: 95 VIKKDKEGHFILIKGKILQEELS-ILNIYAPN-ARAATFIRDTLVKLKAYIAPHTIIVGD 154
Query: 69 FNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMEL-----PLHNGRYTWSREGNGSSRSL 128
FN ++R + K R K + L ++ P G YT+ +G+ S
Sbjct: 155 FNTPLSSKDRSWKQKLNRDTVKLTEVMKQMDLTDIYRTFYPKTKG-YTFFSAPHGTF-SK 214
Query: 129 LDRFLISSEWDELFANSRVTRQLRILSDHFPI-LLEASSFECGPPPFRFCNNWLEIKDCC 188
+D + + N + ILSDH + L+ ++ G P F + N + D
Sbjct: 215 IDHIIGHKTGLNRYKNIEIVP--CILSDHHGLRLIFNNNINNGKPTFTWKLNNTLLNDTL 274
Query: 189 LV--IKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETL--------I 248
+ IKK ++ L + A I KK ET +
Sbjct: 275 VKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIALSASKKKRETAHTSSLTTHL 334
Query: 249 FEIEKRDLLLENSEEEGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFF 308
+EK++ + + ++ L + N + R +R + +++ + ++ K
Sbjct: 335 KALEKKE--ANSPKRSRRQEIIKLRGEINQVETRRTIQR--INQTRSWFFEKINKIDKPL 394
Query: 309 HRFLSAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLY-TKIPGERALPLHL---H 368
R + + LI+++ N++G++TT ++I++ I FY LY TK+ + L
Sbjct: 395 ARLTKGHRDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQ 454
Query: 369 WPEINDSQNRMLVARFTMEEVKIALNLLGKNKARGPDGFTVEF 392
P++N Q L + + +E++ +N L K+ GPDGF+ EF
Sbjct: 455 VPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEF 487
BLAST of CmUC03G059930 vs. ExPASy Swiss-Prot
Match:
P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)
HSP 1 Score: 68.9 bits (167), Expect = 1.4e-10
Identity = 87/378 (23.02%), Postives = 154/378 (40.74%), Query Frame = 0
Query: 35 NIYGPNDYRERKHLWEELHSLAAYCTDAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNF 94
NIY PN + + + E L ++ + + GDFN + +R + K ++ + N+
Sbjct: 112 NIYAPN-HNAPQFIRETLTDMSNLISSTSIVVGDFNTPLAVLDRSSKKKLSKEILDLNST 171
Query: 95 ISSSQLMEL--PLHNGR--YTWSREGNGSSRSLLDRFLISSEWDELFANSRVTRQLRILS 154
I L ++ H + YT+ +G + S +D L L ++ I S
Sbjct: 172 IQHLDLTDIYRTFHPNKTEYTFFSSAHG-TYSKIDHIL--GHKSNLSKFKKIEIIPCIFS 231
Query: 155 DHFPILLEAS---SFECGPPPFRFCNNWLEIKDCCLV------IKKALESDNHHGWAGFV 214
DH I +E + + ++ N L +KD ++ I K LE +N+
Sbjct: 232 DHHGIKVELNNNRNLHTHTKTWKLNN--LMLKDTWVIDEIKKEITKFLEQNNNQD----T 291
Query: 215 LSTKLREVKSAVKTWNSI-FEGERKKSEETLIFEIEKRDLLLENSEEEGVDNVLCLTLKA 274
L + AV I + KK+E + + LE E +
Sbjct: 292 NYQNLWDTAKAVLRGKFIALQAFLKKTEREEVNNLMGHLKQLEKEEHSNPKPSRRKEITK 351
Query: 275 NLLSLYRIEERNLMQ---KSKLNWLSLGDENSKFFHRFLSAKKRRNLISELENDQGEVTT 334
L IE + ++Q KSK + ++ K K+ ++LIS + N E+TT
Sbjct: 352 IRAELNEIENKRIIQQINKSKSWFFEKINKIDKPLANLTRKKRVKSLISSIRNGNDEITT 411
Query: 335 SYKDIEDLILKFYSSLYT-KIPGERALPLHL---HWPEINDSQNRMLVARFTMEEVKIAL 392
+I+ ++ ++Y LY+ K + + +L H P ++ + ML + E+ +
Sbjct: 412 DPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTI 471
BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match:
A5CAA2 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030956 PE=4 SV=1)
HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 142/392 (36.22%), Postives = 211/392 (53.83%), Query Frame = 0
Query: 1 MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
+WD K+S EV+ G +S+S+K S W+ +YGPN+ RK LW EL +A +
Sbjct: 902 IWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDLWVELSDIAGLAS 961
Query: 61 DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
WC+GGDFNV RR E+ + T M+ F++FIS +L++LPL + +TWS
Sbjct: 962 PRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPV 1021
Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
LDRFL S+EW++ F S R SDH+PI+LE + F+ GP PFRF N WL+
Sbjct: 1022 CKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPS 1081
Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
+ +GW G KL+ VK+ +K WN GE K +E ++ + D
Sbjct: 1082 FKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSALVNFDS 1141
Query: 241 LLENSEEEGVDNVLC---LTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLS 300
L +E G+ + L K L L EE + QK+++ W+ GD NSKFFH+ +
Sbjct: 1142 L---EQEGGLSHELLAQRAIKKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 1201
Query: 301 AKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQN 360
++ R I ELEN+ G++ + + I++ IL+++ LYT GE L W I+
Sbjct: 1202 GRRNRKFIKELENENGQMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESA 1261
Query: 361 RMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
L + FT EE+ A+ + ++KA GPDGFT+
Sbjct: 1262 VRLESPFTEEEICKAIFQMDRDKAPGPDGFTI 1290
BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match:
A0A438JX47 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_26 PE=4 SV=1)
HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 142/392 (36.22%), Postives = 211/392 (53.83%), Query Frame = 0
Query: 1 MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
+WD K+S EV+ G +S+S+K S W+ +YGPN+ RK LW EL +A +
Sbjct: 399 IWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDLWVELSDIAGLAS 458
Query: 61 DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
WC+GGDFNV RR E+ + T M+ F++FIS +L++LPL + +TWS
Sbjct: 459 PRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPV 518
Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
LDRFL S+EW++ F S R SDH+PI+LE + F+ GP PFRF N WL+
Sbjct: 519 CKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPS 578
Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
+ +GW G KL+ VK+ +K WN GE K +E ++ + D
Sbjct: 579 FKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSALVNFDS 638
Query: 241 LLENSEEEGVDNVLC---LTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLS 300
L +E G+ + L K L L EE + QK+++ W+ GD NSKFFH+ +
Sbjct: 639 L---EQEGGLSHELLAQRAIKKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 698
Query: 301 AKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQN 360
++ R I ELEN+ G++ + + I++ IL+++ LYT GE L W I+
Sbjct: 699 GRRNRKFIKELENENGQMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESA 758
Query: 361 RMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
L + FT EE+ A+ + ++KA GPDGFT+
Sbjct: 759 VRLESPFTEEEICKAIFQMDRDKAPGPDGFTI 787
BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match:
A0A438GDE7 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_4 PE=4 SV=1)
HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 142/392 (36.22%), Postives = 211/392 (53.83%), Query Frame = 0
Query: 1 MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
+WD K+S EV+ G +S+S+K S W+ +YGPN+ RK LW EL +A +
Sbjct: 884 IWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDLWVELSDIAGLAS 943
Query: 61 DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
WC+GGDFNV RR E+ + T M+ F++FIS +L++LPL + +TWS
Sbjct: 944 PRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPV 1003
Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
LDRFL S+EW++ F S R SDH+PI+LE + F+ GP PFRF N WL+
Sbjct: 1004 CKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPS 1063
Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
+ +GW G KL+ VK+ +K WN GE K +E ++ + D
Sbjct: 1064 FKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSALVNFDS 1123
Query: 241 LLENSEEEGVDNVLC---LTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLS 300
L +E G+ + L K L L EE + QK+++ W+ GD NSKFFH+ +
Sbjct: 1124 L---EQEGGLSHELLAQRAIKKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 1183
Query: 301 AKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQN 360
++ R I ELEN+ G++ + + I++ IL+++ LYT GE L W I+
Sbjct: 1184 GRRNRKFIKELENENGQMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESA 1243
Query: 361 RMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
L + FT EE+ A+ + ++KA GPDGFT+
Sbjct: 1244 VRLESPFTEEEICKAIFQMDRDKAPGPDGFTI 1272
BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match:
A0A438J9S5 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_690 PE=4 SV=1)
HSP 1 Score: 258.1 bits (658), Expect = 6.2e-65
Identity = 148/393 (37.66%), Postives = 210/393 (53.44%), Query Frame = 0
Query: 1 MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
+WD SK IE + G +S++VK + + S W+ ++YGP + RK W EL L
Sbjct: 399 LWDSSKFECIEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDFWLELQDLYGLTF 458
Query: 61 DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
WC+GGDFNV RRI E+ + K T MR F+ FI S L++ PL N +TWS
Sbjct: 459 PRWCVGGDFNVIRRISEKLGESKLTFNMRCFDEFIRESGLLDPPLRNAAFTWSNMQADPI 518
Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
LDRFL SSEWD F+ S R SDH PI LE + + GP PFRF N WL +
Sbjct: 519 CKRLDRFLFSSEWDTFFSQSFQEALPRWTSDHSPICLETNPLKWGPTPFRFENMWLLHPE 578
Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
+ + GW G KL+ VK +K WN + G+ K+ ++ ++ ++ + DL
Sbjct: 579 FKEKFRVWWQECTGEGWEGHKFMRKLKFVKLKLKEWNIMTFGDLKERKKLILTDLSRIDL 638
Query: 241 LLENSEEEG---VDNVLCLTL-KANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFL 300
+ E+EG D VL TL + L + EE QKS++ W+ GD NSKFFHR
Sbjct: 639 I----EQEGNLNPDLVLERTLRRKELEDVLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVA 698
Query: 301 SAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQ 360
+ ++ R I L +++GE + +DI + I+ F+ +LY+K GE + W I+
Sbjct: 699 TCRRSRKFIKSLISERGETLNNIEDISEEIVNFFGNLYSKPVGESWRVEGIDWVPISGES 758
Query: 361 NRMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
L FT EEV++A+ L K KA GPDGFT+
Sbjct: 759 GVWLDRPFTEEEVRMAVFQLNKEKAPGPDGFTI 787
BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 256.9 bits (655), Expect = 1.4e-64
Identity = 133/391 (34.02%), Postives = 212/391 (54.22%), Query Frame = 0
Query: 1 MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
MW++ SI+ V KG +S+S++ + N W+ IYGP + R WEEL L + C
Sbjct: 1 MWNDQNFSILSVFKGAFSVSIQVGSNNGAFWWLSAIYGPAKRKNRPLFWEELEHLKSICL 60
Query: 61 DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
W +GGDFNV R +E + MR+FN+FIS+ L++ PL N +YTWS ++
Sbjct: 61 PTWILGGDFNVIRWKEETTTKNPALLSMRRFNSFISNCNLIDPPLSNAKYTWSNLRAQAT 120
Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
S LDRFL +S+W+ +F R SDHFPI+LE+S+ GP PFRF N +L+ D
Sbjct: 121 LSRLDRFLFTSQWENIFPGHTSKVLTRTTSDHFPIVLESSTISWGPSPFRFTNAYLKDPD 180
Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
I+ + + G+AG+ +L+++ +KTW +G+ + S++ I EI++ D
Sbjct: 181 YKKNIEFWWGNTSQPGYAGYSFMRRLKQLALIIKTWGRDKKGKNEASKKACIKEIDQIDK 240
Query: 241 LLENSEEEGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKK 300
L + LKA+L + E + QK K W+ GDENS FFH+ +A++
Sbjct: 241 LEAEGSATEIHREKRTALKADLSQINLTEAQIWAQKCKRIWVHEGDENSSFFHKICTARQ 300
Query: 301 RRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRML 360
++ LIS++ N+ G+ + DI D ++ + +YT + +L W I++ + +L
Sbjct: 301 KKCLISKIINNSGQNCLNDSDIADAFIQHFEDIYTDNRNSQLFIENLDWCPISNINSELL 360
Query: 361 VARFTMEEVKIALNLLGKNKARGPDGFTVEF 392
F E+ + L KNKA GPDG+ ++F
Sbjct: 361 DKPFNEAEIWLTLKSFAKNKAPGPDGYAMDF 391
BLAST of CmUC03G059930 vs. TAIR 10
Match:
AT1G43760.1 (DNAse I-like superfamily protein )
HSP 1 Score: 98.2 bits (243), Expect = 1.6e-20
Identity = 93/346 (26.88%), Postives = 149/346 (43.06%), Query Frame = 0
Query: 67 GDFNVTRRIQERFPQGKTT---RGMRKFNNFISSSQLMELPLHNGRYTWS--REGNGSSR 126
GDF+ + + +T+ RG+ +F N + S L+++P YTWS ++ N R
Sbjct: 225 GDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIR 284
Query: 127 SLLDRFLISSEWDELFANSRVTRQLRILSDHFPIL-----LEASSFECGPPPFRFCNNWL 186
LDR + + +W F ++ +L +SDH P + L S +C FR+ +
Sbjct: 285 K-LDRAIANGDWFSSFPSAIAVFELSGVSDHSPCIIILENLPKRSKKC----FRYFSFLS 344
Query: 187 EIKDCCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWN-SIFEGERKKSEETLIFEI 246
+ + A E G F L L+ K K N F + K++E L
Sbjct: 345 THPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLE 404
Query: 247 EKRDLLLENSEE-----EGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSK 306
+ LL N + E V A L S YR QKS++ WL GD N++
Sbjct: 405 SIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYR-------QKSRIKWLQDGDANTR 464
Query: 307 FFHRFLSAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTK-----IPGERALPL 366
FFH+ + A + +NLI L D + ++++I+ +Y+ L P
Sbjct: 465 FFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIK 524
Query: 367 HLHWPEINDSQNRMLVARFTMEEVKIALNLLGKNKARGPDGFTVEF 392
+H ND+ L A + +E+ A+ + +NKA GPD FT EF
Sbjct: 525 DIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEF 558
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038904301.1 | 1.6e-83 | 53.16 | uncharacterized protein LOC120090656 [Benincasa hispida] | [more] |
XP_038884536.1 | 3.2e-76 | 52.27 | DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida] | [more] |
XP_038884537.1 | 3.2e-76 | 52.27 | DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida] | [more] |
XP_038884535.1 | 3.2e-76 | 52.27 | DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida] | [more] |
RVX13544.1 | 3.4e-65 | 36.22 | LINE-1 retrotransposable element ORF2 protein [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
P11369 | 5.0e-11 | 22.58 | LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... | [more] |
P08548 | 1.4e-10 | 23.02 | LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A5CAA2 | 1.6e-65 | 36.22 | Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... | [more] |
A0A438JX47 | 1.6e-65 | 36.22 | LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_... | [more] |
A0A438GDE7 | 1.6e-65 | 36.22 | LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_... | [more] |
A0A438J9S5 | 6.2e-65 | 37.66 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
A0A5A7T9I7 | 1.4e-64 | 34.02 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
AT1G43760.1 | 1.6e-20 | 26.88 | DNAse I-like superfamily protein | [more] |