CmUC03G059930 (gene) Watermelon (USVL531) v1

Overview
NameCmUC03G059930
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
LocationCmU531Chr03: 17789584 .. 17790786 (+)
RNA-Seq ExpressionCmUC03G059930
SyntenyCmUC03G059930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGACGAAAGCAAGATCTCGATCATTGAAGTTCTAAAGGGAGGTTACTCTCTTTCGGTTAAGTGCTTGACTATTAATAAAACGAGCGGATGGGTAAAAAATATCTATGGGCCTAACGATTATAGAGAAAGGAAGCATCTATGGGAAGAATTGCACTCTTTGGCAGCCTATTGCACTGATGCTTGGTGCATTGGAGGAGATTTCAATGTCACAAGGAGGATTCAAGAGAGATTCCCTCAAGGTAAAACCACAAGAGGAATGAGGAAGTTCAACAATTTCATCTCTTCTTCACAACTTATGGAGCTTCCTCTACACAATGGAAGGTATACTTGGTCCCGAGAAGGCAATGGTTCCTCAAGATCCCTCTTAGACCGATTTCTAATTTCAAGTGAATGGGATGAACTCTTTGCTAACTCAAGAGTCACTAGACAATTGCGCATCCTCTCAGATCATTTCCCTATTTTATTAGAAGCTAGCTCCTTTGAATGTGGTCCCCCTCCATTCAGATTCTGTAACAATTGGCTTGAGATAAAAGATTGCTGTCTAGTCATCAAAAAAGCACTAGAATCAGACAATCATCATGGCTGGGCAGGATTTGTTCTGTCTACTAAACTCAGAGAGGTCAAATCAGCAGTAAAGACATGGAATTCAATCTTTGAAGGAGAAAGAAAGAAATCCGAGGAGACCCTAATATTTGAAATCGAGAAAAGAGATCTATTATTAGAAAATTCGGAGGAAGAAGGAGTAGACAATGTCCTTTGCCTTACATTGAAGGCTAACCTCTTATCACTTTACCGAATTGAGGAGAGAAATCTAATGCAGAAAAGTAAGTTGAATTGGCTAAGTTTGGGAGATGAGAATTCAAAATTCTTCCACAGATTCTTGTCAGCTAAAAAAAGAAGAAATCTGATTTCAGAATTGGAAAATGATCAAGGGGAAGTTACCACCTCTTATAAAGACATTGAAGATTTAATCCTGAAATTTTACAGCTCACTTTACACGAAAATTCCAGGCGAAAGAGCTCTCCCCTTGCATTTACATTGGCCGGAAATCAATGATTCTCAAAATAGAATGCTGGTTGCTCGTTTTACTATGGAAGAAGTGAAAATCGCGTTGAATCTTTTGGGAAAAAATAAAGCTCGGGGACCAGATGGTTTCACAGTGGAATTTTCTGAAATTTTGGGAGGAATTGAAGGATAA

mRNA sequence

ATGTGGGACGAAAGCAAGATCTCGATCATTGAAGTTCTAAAGGGAGGTTACTCTCTTTCGGTTAAGTGCTTGACTATTAATAAAACGAGCGGATGGGTAAAAAATATCTATGGGCCTAACGATTATAGAGAAAGGAAGCATCTATGGGAAGAATTGCACTCTTTGGCAGCCTATTGCACTGATGCTTGGTGCATTGGAGGAGATTTCAATGTCACAAGGAGGATTCAAGAGAGATTCCCTCAAGGTAAAACCACAAGAGGAATGAGGAAGTTCAACAATTTCATCTCTTCTTCACAACTTATGGAGCTTCCTCTACACAATGGAAGGTATACTTGGTCCCGAGAAGGCAATGGTTCCTCAAGATCCCTCTTAGACCGATTTCTAATTTCAAGTGAATGGGATGAACTCTTTGCTAACTCAAGAGTCACTAGACAATTGCGCATCCTCTCAGATCATTTCCCTATTTTATTAGAAGCTAGCTCCTTTGAATGTGGTCCCCCTCCATTCAGATTCTGTAACAATTGGCTTGAGATAAAAGATTGCTGTCTAGTCATCAAAAAAGCACTAGAATCAGACAATCATCATGGCTGGGCAGGATTTGTTCTGTCTACTAAACTCAGAGAGGTCAAATCAGCAGTAAAGACATGGAATTCAATCTTTGAAGGAGAAAGAAAGAAATCCGAGGAGACCCTAATATTTGAAATCGAGAAAAGAGATCTATTATTAGAAAATTCGGAGGAAGAAGGAGTAGACAATGTCCTTTGCCTTACATTGAAGGCTAACCTCTTATCACTTTACCGAATTGAGGAGAGAAATCTAATGCAGAAAAGTAAGTTGAATTGGCTAAGTTTGGGAGATGAGAATTCAAAATTCTTCCACAGATTCTTGTCAGCTAAAAAAAGAAGAAATCTGATTTCAGAATTGGAAAATGATCAAGGGGAAGTTACCACCTCTTATAAAGACATTGAAGATTTAATCCTGAAATTTTACAGCTCACTTTACACGAAAATTCCAGGCGAAAGAGCTCTCCCCTTGCATTTACATTGGCCGGAAATCAATGATTCTCAAAATAGAATGCTGGTTGCTCGTTTTACTATGGAAGAAGTGAAAATCGCGTTGAATCTTTTGGGAAAAAATAAAGCTCGGGGACCAGATGGTTTCACAGTGGAATTTTCTGAAATTTTGGGAGGAATTGAAGGATAA

Coding sequence (CDS)

ATGTGGGACGAAAGCAAGATCTCGATCATTGAAGTTCTAAAGGGAGGTTACTCTCTTTCGGTTAAGTGCTTGACTATTAATAAAACGAGCGGATGGGTAAAAAATATCTATGGGCCTAACGATTATAGAGAAAGGAAGCATCTATGGGAAGAATTGCACTCTTTGGCAGCCTATTGCACTGATGCTTGGTGCATTGGAGGAGATTTCAATGTCACAAGGAGGATTCAAGAGAGATTCCCTCAAGGTAAAACCACAAGAGGAATGAGGAAGTTCAACAATTTCATCTCTTCTTCACAACTTATGGAGCTTCCTCTACACAATGGAAGGTATACTTGGTCCCGAGAAGGCAATGGTTCCTCAAGATCCCTCTTAGACCGATTTCTAATTTCAAGTGAATGGGATGAACTCTTTGCTAACTCAAGAGTCACTAGACAATTGCGCATCCTCTCAGATCATTTCCCTATTTTATTAGAAGCTAGCTCCTTTGAATGTGGTCCCCCTCCATTCAGATTCTGTAACAATTGGCTTGAGATAAAAGATTGCTGTCTAGTCATCAAAAAAGCACTAGAATCAGACAATCATCATGGCTGGGCAGGATTTGTTCTGTCTACTAAACTCAGAGAGGTCAAATCAGCAGTAAAGACATGGAATTCAATCTTTGAAGGAGAAAGAAAGAAATCCGAGGAGACCCTAATATTTGAAATCGAGAAAAGAGATCTATTATTAGAAAATTCGGAGGAAGAAGGAGTAGACAATGTCCTTTGCCTTACATTGAAGGCTAACCTCTTATCACTTTACCGAATTGAGGAGAGAAATCTAATGCAGAAAAGTAAGTTGAATTGGCTAAGTTTGGGAGATGAGAATTCAAAATTCTTCCACAGATTCTTGTCAGCTAAAAAAAGAAGAAATCTGATTTCAGAATTGGAAAATGATCAAGGGGAAGTTACCACCTCTTATAAAGACATTGAAGATTTAATCCTGAAATTTTACAGCTCACTTTACACGAAAATTCCAGGCGAAAGAGCTCTCCCCTTGCATTTACATTGGCCGGAAATCAATGATTCTCAAAATAGAATGCTGGTTGCTCGTTTTACTATGGAAGAAGTGAAAATCGCGTTGAATCTTTTGGGAAAAAATAAAGCTCGGGGACCAGATGGTTTCACAGTGGAATTTTCTGAAATTTTGGGAGGAATTGAAGGATAA

Protein sequence

MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCTDAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSSRSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKDCCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDLLLENSEEEGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRMLVARFTMEEVKIALNLLGKNKARGPDGFTVEFSEILGGIEG
Homology
BLAST of CmUC03G059930 vs. NCBI nr
Match: XP_038904301.1 (uncharacterized protein LOC120090656 [Benincasa hispida])

HSP 1 Score: 320.9 bits (821), Expect = 1.6e-83
Identity = 160/301 (53.16%), Postives = 213/301 (70.76%), Query Frame = 0

Query: 48  LWEELHSLAAYCTDAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHN 107
           +W EL SLA    D WCIG +FN  RR  ERFP G+ TR M  FN FI  + L+E PL N
Sbjct: 1   MWAELSSLAEKFDDPWCIGENFNSIRRRHERFPVGRATRDMNNFNKFIRLNNLLEFPLSN 60

Query: 108 GRYTWSREGNGSSRSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPP 167
           G++TWSREG+ +S+SLLD FL+SS W+++F NSRV RQ R +SDHFP+ LEA +FE GP 
Sbjct: 61  GQFTWSREGDVASKSLLDHFLVSSTWEDVFDNSRVARQARTMSDHFPLTLEAGAFEWGPS 120

Query: 168 PFRFCNNWLEIKDCCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKS 227
            FRFCN+WL  K+ C +I+K+L+   +H WA   LST LR+ KSA+K W   F  E K  
Sbjct: 121 SFRFCNSWLNNKESCKLIEKSLKKKENHQWAA-TLSTNLRKTKSALKKWFHEFGKEMKLK 180

Query: 228 EETLIFEIEKRD-LLLENSEEEGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGD 287
           EE+L+ E++++D L ++ S +  VD+    +LKA+LL+LY++EE++L+QK KL WL  GD
Sbjct: 181 EESLLNELQRKDSLTVDVSSQIRVDDA-SYSLKADLLALYQLEEKSLIQKCKLKWLKEGD 240

Query: 288 ENSKFFHRFLSAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLH 347
           EN+ FFHRFLS +KR+NL ++L NDQ   T   +DIED+IL FYS LY+K  G RA+PL 
Sbjct: 241 ENTSFFHRFLSTRKRKNLFAKLLNDQDLPTRFTRDIEDIILGFYSLLYSKSDGPRAIPLT 299

BLAST of CmUC03G059930 vs. NCBI nr
Match: XP_038884536.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 3.2e-76
Identity = 138/264 (52.27%), Postives = 194/264 (73.48%), Query Frame = 0

Query: 128 LISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKDCCLVIKK 187
           L+S  WDE F +SRV+RQ R +SDHFP+L EA +FE GP PFRFCN+WL+ K+CC +I+ 
Sbjct: 59  LVSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIEN 118

Query: 188 ALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDLLLENSEE 247
           +        WAGF L ++LR VK +VK W +  E ++K  EE+L+ EI+++DL  +  E 
Sbjct: 119 SSLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLEN 178

Query: 248 EGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKKRRNLISE 307
              +  + ++LKA+LLSLY+ EER+L+QKSKLNWL LGDEN+ FFHRFL+AK+R+NLI+E
Sbjct: 179 FSAEEDVRVSLKADLLSLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAE 238

Query: 308 LENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRMLVARFTME 367
           L N+QG  T S+++IE +IL F+S+LYTK  G R++PL++ W  ++   N  L+A+F+  
Sbjct: 239 LFNEQGLPTKSFREIETIILDFFSNLYTKCTGTRSIPLNMAWSRVSAEGNSRLIAKFSTT 298

Query: 368 EVKIALNLLGKNKARGPDGFTVEF 392
           E+ +A+  LGKNKA GPDGFTVEF
Sbjct: 299 EITVAIQALGKNKAPGPDGFTVEF 322

BLAST of CmUC03G059930 vs. NCBI nr
Match: XP_038884537.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 3.2e-76
Identity = 138/264 (52.27%), Postives = 194/264 (73.48%), Query Frame = 0

Query: 128 LISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKDCCLVIKK 187
           L+S  WDE F +SRV+RQ R +SDHFP+L EA +FE GP PFRFCN+WL+ K+CC +I+ 
Sbjct: 59  LVSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIEN 118

Query: 188 ALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDLLLENSEE 247
           +        WAGF L ++LR VK +VK W +  E ++K  EE+L+ EI+++DL  +  E 
Sbjct: 119 SSLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLEN 178

Query: 248 EGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKKRRNLISE 307
              +  + ++LKA+LLSLY+ EER+L+QKSKLNWL LGDEN+ FFHRFL+AK+R+NLI+E
Sbjct: 179 FSAEEDVRVSLKADLLSLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAE 238

Query: 308 LENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRMLVARFTME 367
           L N+QG  T S+++IE +IL F+S+LYTK  G R++PL++ W  ++   N  L+A+F+  
Sbjct: 239 LFNEQGLPTKSFREIETIILDFFSNLYTKCTGTRSIPLNMAWSRVSAEGNSRLIAKFSTT 298

Query: 368 EVKIALNLLGKNKARGPDGFTVEF 392
           E+ +A+  LGKNKA GPDGFTVEF
Sbjct: 299 EITVAIQALGKNKAPGPDGFTVEF 322

BLAST of CmUC03G059930 vs. NCBI nr
Match: XP_038884535.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 3.2e-76
Identity = 138/264 (52.27%), Postives = 194/264 (73.48%), Query Frame = 0

Query: 128 LISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKDCCLVIKK 187
           L+S  WDE F +SRV+RQ R +SDHFP+L EA +FE GP PFRFCN+WL+ K+CC +I+ 
Sbjct: 59  LVSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIEN 118

Query: 188 ALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDLLLENSEE 247
           +        WAGF L ++LR VK +VK W +  E ++K  EE+L+ EI+++DL  +  E 
Sbjct: 119 SSLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLEN 178

Query: 248 EGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKKRRNLISE 307
              +  + ++LKA+LLSLY+ EER+L+QKSKLNWL LGDEN+ FFHRFL+AK+R+NLI+E
Sbjct: 179 FSAEEDVRVSLKADLLSLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAE 238

Query: 308 LENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRMLVARFTME 367
           L N+QG  T S+++IE +IL F+S+LYTK  G R++PL++ W  ++   N  L+A+F+  
Sbjct: 239 LFNEQGLPTKSFREIETIILDFFSNLYTKCTGTRSIPLNMAWSRVSAEGNSRLIAKFSTT 298

Query: 368 EVKIALNLLGKNKARGPDGFTVEF 392
           E+ +A+  LGKNKA GPDGFTVEF
Sbjct: 299 EITVAIQALGKNKAPGPDGFTVEF 322

BLAST of CmUC03G059930 vs. NCBI nr
Match: RVX13544.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 260.0 bits (663), Expect = 3.4e-65
Identity = 142/392 (36.22%), Postives = 211/392 (53.83%), Query Frame = 0

Query: 1   MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
           +WD  K+S  EV+ G +S+S+K       S W+  +YGPN+   RK LW EL  +A   +
Sbjct: 399 IWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDLWVELSDIAGLAS 458

Query: 61  DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
             WC+GGDFNV RR  E+    + T  M+ F++FIS  +L++LPL +  +TWS       
Sbjct: 459 PRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPV 518

Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
              LDRFL S+EW++ F  S      R  SDH+PI+LE + F+ GP PFRF N WL+   
Sbjct: 519 CKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPS 578

Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
                 +       +GW G     KL+ VK+ +K WN    GE  K +E ++  +   D 
Sbjct: 579 FKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSALVNFDS 638

Query: 241 LLENSEEEGVDNVLC---LTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLS 300
           L    +E G+ + L       K  L  L   EE +  QK+++ W+  GD NSKFFH+  +
Sbjct: 639 L---EQEGGLSHELLAQRAIKKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 698

Query: 301 AKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQN 360
            ++ R  I ELEN+ G++  + + I++ IL+++  LYT   GE      L W  I+    
Sbjct: 699 GRRNRKFIKELENENGQMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESA 758

Query: 361 RMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
             L + FT EE+  A+  + ++KA GPDGFT+
Sbjct: 759 VRLESPFTEEEICKAIFQMDRDKAPGPDGFTI 787

BLAST of CmUC03G059930 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 5.0e-11
Identity = 91/403 (22.58%), Postives = 167/403 (41.44%), Query Frame = 0

Query: 9   IIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCTDAWCIGGD 68
           +I+  K G+ + +K   + +    + NIY PN  R    + + L  L AY      I GD
Sbjct: 95  VIKKDKEGHFILIKGKILQEELS-ILNIYAPN-ARAATFIRDTLVKLKAYIAPHTIIVGD 154

Query: 69  FNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMEL-----PLHNGRYTWSREGNGSSRSL 128
           FN     ++R  + K  R   K    +    L ++     P   G YT+    +G+  S 
Sbjct: 155 FNTPLSSKDRSWKQKLNRDTVKLTEVMKQMDLTDIYRTFYPKTKG-YTFFSAPHGTF-SK 214

Query: 129 LDRFLISSEWDELFANSRVTRQLRILSDHFPI-LLEASSFECGPPPFRFCNNWLEIKDCC 188
           +D  +        + N  +     ILSDH  + L+  ++   G P F +  N   + D  
Sbjct: 215 IDHIIGHKTGLNRYKNIEIVP--CILSDHHGLRLIFNNNINNGKPTFTWKLNNTLLNDTL 274

Query: 189 LV--IKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETL--------I 248
           +   IKK ++               L +   A      I     KK  ET         +
Sbjct: 275 VKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIALSASKKKRETAHTSSLTTHL 334

Query: 249 FEIEKRDLLLENSEEEGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFF 308
             +EK++    + +      ++ L  + N +   R  +R  + +++  +    ++  K  
Sbjct: 335 KALEKKE--ANSPKRSRRQEIIKLRGEINQVETRRTIQR--INQTRSWFFEKINKIDKPL 394

Query: 309 HRFLSAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLY-TKIPGERALPLHL---H 368
            R     + + LI+++ N++G++TT  ++I++ I  FY  LY TK+     +   L    
Sbjct: 395 ARLTKGHRDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQ 454

Query: 369 WPEINDSQNRMLVARFTMEEVKIALNLLGKNKARGPDGFTVEF 392
            P++N  Q   L +  + +E++  +N L   K+ GPDGF+ EF
Sbjct: 455 VPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEF 487

BLAST of CmUC03G059930 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-10
Identity = 87/378 (23.02%), Postives = 154/378 (40.74%), Query Frame = 0

Query: 35  NIYGPNDYRERKHLWEELHSLAAYCTDAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNF 94
           NIY PN +   + + E L  ++   +    + GDFN    + +R  + K ++ +   N+ 
Sbjct: 112 NIYAPN-HNAPQFIRETLTDMSNLISSTSIVVGDFNTPLAVLDRSSKKKLSKEILDLNST 171

Query: 95  ISSSQLMEL--PLHNGR--YTWSREGNGSSRSLLDRFLISSEWDELFANSRVTRQLRILS 154
           I    L ++    H  +  YT+    +G + S +D  L       L    ++     I S
Sbjct: 172 IQHLDLTDIYRTFHPNKTEYTFFSSAHG-TYSKIDHIL--GHKSNLSKFKKIEIIPCIFS 231

Query: 155 DHFPILLEAS---SFECGPPPFRFCNNWLEIKDCCLV------IKKALESDNHHGWAGFV 214
           DH  I +E +   +       ++  N  L +KD  ++      I K LE +N+       
Sbjct: 232 DHHGIKVELNNNRNLHTHTKTWKLNN--LMLKDTWVIDEIKKEITKFLEQNNNQD----T 291

Query: 215 LSTKLREVKSAVKTWNSI-FEGERKKSEETLIFEIEKRDLLLENSEEEGVDNVLCLTLKA 274
               L +   AV     I  +   KK+E   +  +      LE  E           +  
Sbjct: 292 NYQNLWDTAKAVLRGKFIALQAFLKKTEREEVNNLMGHLKQLEKEEHSNPKPSRRKEITK 351

Query: 275 NLLSLYRIEERNLMQ---KSKLNWLSLGDENSKFFHRFLSAKKRRNLISELENDQGEVTT 334
               L  IE + ++Q   KSK  +    ++  K        K+ ++LIS + N   E+TT
Sbjct: 352 IRAELNEIENKRIIQQINKSKSWFFEKINKIDKPLANLTRKKRVKSLISSIRNGNDEITT 411

Query: 335 SYKDIEDLILKFYSSLYT-KIPGERALPLHL---HWPEINDSQNRMLVARFTMEEVKIAL 392
              +I+ ++ ++Y  LY+ K    + +  +L   H P ++  +  ML    +  E+   +
Sbjct: 412 DPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTI 471

BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match: A5CAA2 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030956 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 142/392 (36.22%), Postives = 211/392 (53.83%), Query Frame = 0

Query: 1    MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
            +WD  K+S  EV+ G +S+S+K       S W+  +YGPN+   RK LW EL  +A   +
Sbjct: 902  IWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDLWVELSDIAGLAS 961

Query: 61   DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
              WC+GGDFNV RR  E+    + T  M+ F++FIS  +L++LPL +  +TWS       
Sbjct: 962  PRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPV 1021

Query: 121  RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
               LDRFL S+EW++ F  S      R  SDH+PI+LE + F+ GP PFRF N WL+   
Sbjct: 1022 CKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPS 1081

Query: 181  CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
                  +       +GW G     KL+ VK+ +K WN    GE  K +E ++  +   D 
Sbjct: 1082 FKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSALVNFDS 1141

Query: 241  LLENSEEEGVDNVLC---LTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLS 300
            L    +E G+ + L       K  L  L   EE +  QK+++ W+  GD NSKFFH+  +
Sbjct: 1142 L---EQEGGLSHELLAQRAIKKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 1201

Query: 301  AKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQN 360
             ++ R  I ELEN+ G++  + + I++ IL+++  LYT   GE      L W  I+    
Sbjct: 1202 GRRNRKFIKELENENGQMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESA 1261

Query: 361  RMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
              L + FT EE+  A+  + ++KA GPDGFT+
Sbjct: 1262 VRLESPFTEEEICKAIFQMDRDKAPGPDGFTI 1290

BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match: A0A438JX47 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_26 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 142/392 (36.22%), Postives = 211/392 (53.83%), Query Frame = 0

Query: 1   MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
           +WD  K+S  EV+ G +S+S+K       S W+  +YGPN+   RK LW EL  +A   +
Sbjct: 399 IWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDLWVELSDIAGLAS 458

Query: 61  DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
             WC+GGDFNV RR  E+    + T  M+ F++FIS  +L++LPL +  +TWS       
Sbjct: 459 PRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPV 518

Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
              LDRFL S+EW++ F  S      R  SDH+PI+LE + F+ GP PFRF N WL+   
Sbjct: 519 CKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPS 578

Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
                 +       +GW G     KL+ VK+ +K WN    GE  K +E ++  +   D 
Sbjct: 579 FKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSALVNFDS 638

Query: 241 LLENSEEEGVDNVLC---LTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLS 300
           L    +E G+ + L       K  L  L   EE +  QK+++ W+  GD NSKFFH+  +
Sbjct: 639 L---EQEGGLSHELLAQRAIKKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 698

Query: 301 AKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQN 360
            ++ R  I ELEN+ G++  + + I++ IL+++  LYT   GE      L W  I+    
Sbjct: 699 GRRNRKFIKELENENGQMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESA 758

Query: 361 RMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
             L + FT EE+  A+  + ++KA GPDGFT+
Sbjct: 759 VRLESPFTEEEICKAIFQMDRDKAPGPDGFTI 787

BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match: A0A438GDE7 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_4 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 142/392 (36.22%), Postives = 211/392 (53.83%), Query Frame = 0

Query: 1    MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
            +WD  K+S  EV+ G +S+S+K       S W+  +YGPN+   RK LW EL  +A   +
Sbjct: 884  IWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDLWVELSDIAGLAS 943

Query: 61   DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
              WC+GGDFNV RR  E+    + T  M+ F++FIS  +L++LPL +  +TWS       
Sbjct: 944  PRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPV 1003

Query: 121  RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
               LDRFL S+EW++ F  S      R  SDH+PI+LE + F+ GP PFRF N WL+   
Sbjct: 1004 CKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPS 1063

Query: 181  CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
                  +       +GW G     KL+ VK+ +K WN    GE  K +E ++  +   D 
Sbjct: 1064 FKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSALVNFDS 1123

Query: 241  LLENSEEEGVDNVLC---LTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLS 300
            L    +E G+ + L       K  L  L   EE +  QK+++ W+  GD NSKFFH+  +
Sbjct: 1124 L---EQEGGLSHELLAQRAIKKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 1183

Query: 301  AKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQN 360
             ++ R  I ELEN+ G++  + + I++ IL+++  LYT   GE      L W  I+    
Sbjct: 1184 GRRNRKFIKELENENGQMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESA 1243

Query: 361  RMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
              L + FT EE+  A+  + ++KA GPDGFT+
Sbjct: 1244 VRLESPFTEEEICKAIFQMDRDKAPGPDGFTI 1272

BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match: A0A438J9S5 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_690 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.2e-65
Identity = 148/393 (37.66%), Postives = 210/393 (53.44%), Query Frame = 0

Query: 1   MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
           +WD SK   IE + G +S++VK  +  + S W+ ++YGP +   RK  W EL  L     
Sbjct: 399 LWDSSKFECIEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDFWLELQDLYGLTF 458

Query: 61  DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
             WC+GGDFNV RRI E+  + K T  MR F+ FI  S L++ PL N  +TWS       
Sbjct: 459 PRWCVGGDFNVIRRISEKLGESKLTFNMRCFDEFIRESGLLDPPLRNAAFTWSNMQADPI 518

Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
              LDRFL SSEWD  F+ S      R  SDH PI LE +  + GP PFRF N WL   +
Sbjct: 519 CKRLDRFLFSSEWDTFFSQSFQEALPRWTSDHSPICLETNPLKWGPTPFRFENMWLLHPE 578

Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
                +   +     GW G     KL+ VK  +K WN +  G+ K+ ++ ++ ++ + DL
Sbjct: 579 FKEKFRVWWQECTGEGWEGHKFMRKLKFVKLKLKEWNIMTFGDLKERKKLILTDLSRIDL 638

Query: 241 LLENSEEEG---VDNVLCLTL-KANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFL 300
           +    E+EG    D VL  TL +  L  +   EE    QKS++ W+  GD NSKFFHR  
Sbjct: 639 I----EQEGNLNPDLVLERTLRRKELEDVLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVA 698

Query: 301 SAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQ 360
           + ++ R  I  L +++GE   + +DI + I+ F+ +LY+K  GE      + W  I+   
Sbjct: 699 TCRRSRKFIKSLISERGETLNNIEDISEEIVNFFGNLYSKPVGESWRVEGIDWVPISGES 758

Query: 361 NRMLVARFTMEEVKIALNLLGKNKARGPDGFTV 390
              L   FT EEV++A+  L K KA GPDGFT+
Sbjct: 759 GVWLDRPFTEEEVRMAVFQLNKEKAPGPDGFTI 787

BLAST of CmUC03G059930 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-64
Identity = 133/391 (34.02%), Postives = 212/391 (54.22%), Query Frame = 0

Query: 1   MWDESKISIIEVLKGGYSLSVKCLTINKTSGWVKNIYGPNDYRERKHLWEELHSLAAYCT 60
           MW++   SI+ V KG +S+S++  + N    W+  IYGP   + R   WEEL  L + C 
Sbjct: 1   MWNDQNFSILSVFKGAFSVSIQVGSNNGAFWWLSAIYGPAKRKNRPLFWEELEHLKSICL 60

Query: 61  DAWCIGGDFNVTRRIQERFPQGKTTRGMRKFNNFISSSQLMELPLHNGRYTWSREGNGSS 120
             W +GGDFNV R  +E   +      MR+FN+FIS+  L++ PL N +YTWS     ++
Sbjct: 61  PTWILGGDFNVIRWKEETTTKNPALLSMRRFNSFISNCNLIDPPLSNAKYTWSNLRAQAT 120

Query: 121 RSLLDRFLISSEWDELFANSRVTRQLRILSDHFPILLEASSFECGPPPFRFCNNWLEIKD 180
            S LDRFL +S+W+ +F         R  SDHFPI+LE+S+   GP PFRF N +L+  D
Sbjct: 121 LSRLDRFLFTSQWENIFPGHTSKVLTRTTSDHFPIVLESSTISWGPSPFRFTNAYLKDPD 180

Query: 181 CCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWNSIFEGERKKSEETLIFEIEKRDL 240
               I+    + +  G+AG+    +L+++   +KTW    +G+ + S++  I EI++ D 
Sbjct: 181 YKKNIEFWWGNTSQPGYAGYSFMRRLKQLALIIKTWGRDKKGKNEASKKACIKEIDQIDK 240

Query: 241 LLENSEEEGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSKFFHRFLSAKK 300
           L        +       LKA+L  +   E +   QK K  W+  GDENS FFH+  +A++
Sbjct: 241 LEAEGSATEIHREKRTALKADLSQINLTEAQIWAQKCKRIWVHEGDENSSFFHKICTARQ 300

Query: 301 RRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTKIPGERALPLHLHWPEINDSQNRML 360
           ++ LIS++ N+ G+   +  DI D  ++ +  +YT     +    +L W  I++  + +L
Sbjct: 301 KKCLISKIINNSGQNCLNDSDIADAFIQHFEDIYTDNRNSQLFIENLDWCPISNINSELL 360

Query: 361 VARFTMEEVKIALNLLGKNKARGPDGFTVEF 392
              F   E+ + L    KNKA GPDG+ ++F
Sbjct: 361 DKPFNEAEIWLTLKSFAKNKAPGPDGYAMDF 391

BLAST of CmUC03G059930 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-20
Identity = 93/346 (26.88%), Postives = 149/346 (43.06%), Query Frame = 0

Query: 67  GDFNVTRRIQERFPQGKTT---RGMRKFNNFISSSQLMELPLHNGRYTWS--REGNGSSR 126
           GDF+      + +   +T+   RG+ +F N +  S L+++P     YTWS  ++ N   R
Sbjct: 225 GDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIR 284

Query: 127 SLLDRFLISSEWDELFANSRVTRQLRILSDHFPIL-----LEASSFECGPPPFRFCNNWL 186
             LDR + + +W   F ++    +L  +SDH P +     L   S +C    FR+ +   
Sbjct: 285 K-LDRAIANGDWFSSFPSAIAVFELSGVSDHSPCIIILENLPKRSKKC----FRYFSFLS 344

Query: 187 EIKDCCLVIKKALESDNHHGWAGFVLSTKLREVKSAVKTWN-SIFEGERKKSEETLIFEI 246
                 + +  A E     G   F L   L+  K   K  N   F   + K++E L    
Sbjct: 345 THPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLE 404

Query: 247 EKRDLLLENSEE-----EGVDNVLCLTLKANLLSLYRIEERNLMQKSKLNWLSLGDENSK 306
             +  LL N  +     E V         A L S YR       QKS++ WL  GD N++
Sbjct: 405 SIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYR-------QKSRIKWLQDGDANTR 464

Query: 307 FFHRFLSAKKRRNLISELENDQGEVTTSYKDIEDLILKFYSSLYTK-----IPGERALPL 366
           FFH+ + A + +NLI  L  D      +   ++++I+ +Y+ L         P       
Sbjct: 465 FFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIK 524

Query: 367 HLHWPEINDSQNRMLVARFTMEEVKIALNLLGKNKARGPDGFTVEF 392
            +H    ND+    L A  + +E+  A+  + +NKA GPD FT EF
Sbjct: 525 DIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEF 558

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904301.11.6e-8353.16uncharacterized protein LOC120090656 [Benincasa hispida][more]
XP_038884536.13.2e-7652.27DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida][more]
XP_038884537.13.2e-7652.27DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida][more]
XP_038884535.13.2e-7652.27DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida][more]
RVX13544.13.4e-6536.22LINE-1 retrotransposable element ORF2 protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
P113695.0e-1122.58LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... [more]
P085481.4e-1023.02LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
A5CAA21.6e-6536.22Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A438JX471.6e-6536.22LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_... [more]
A0A438GDE71.6e-6536.22LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_... [more]
A0A438J9S56.2e-6537.66Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A5A7T9I71.4e-6434.02LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
AT1G43760.11.6e-2026.88DNAse I-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 2..158
e-value: 3.8E-22
score: 81.2
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 14..158
NoneNo IPR availablePANTHERPTHR33710:SF32SUBFAMILY NOT NAMEDcoord: 29..241
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 29..241

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC03G059930.1CmUC03G059930.1mRNA